Job ID = 6453449 SRX = SRX1150357 Genome = dm6 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2020-06-21T08:32:26 prefetch.2.10.7: 1) Downloading 'SRR2163808'... 2020-06-21T08:32:26 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:32:49 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:32:49 prefetch.2.10.7: 'SRR2163808' is valid 2020-06-21T08:32:49 prefetch.2.10.7: 1) 'SRR2163808' was downloaded successfully 2020-06-21T08:33:41 prefetch.2.10.7: 'SRR2163808' has 10 unresolved dependencies 2020-06-21T08:33:41 prefetch.2.10.7: 2) Downloading 'ncbi-acc:NC_004353.3?vdb-ctx=refseq'... 2020-06-21T08:33:41 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:33:52 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:33:52 prefetch.2.10.7: 2) 'ncbi-acc:NC_004353.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:33:52 prefetch.2.10.7: 3) Downloading 'ncbi-acc:NC_004354.3?vdb-ctx=refseq'... 2020-06-21T08:33:52 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:34:10 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:34:10 prefetch.2.10.7: 3) 'ncbi-acc:NC_004354.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:34:10 prefetch.2.10.7: 4) Downloading 'ncbi-acc:NS_000188.1?vdb-ctx=refseq'... 2020-06-21T08:34:10 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:34:24 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:34:24 prefetch.2.10.7: 4) 'ncbi-acc:NS_000188.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:34:24 prefetch.2.10.7: 5) Downloading 'ncbi-acc:NT_033777.2?vdb-ctx=refseq'... 2020-06-21T08:34:24 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:34:43 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:34:43 prefetch.2.10.7: 5) 'ncbi-acc:NT_033777.2?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:34:43 prefetch.2.10.7: 6) Downloading 'ncbi-acc:NT_033778.3?vdb-ctx=refseq'... 2020-06-21T08:34:43 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:35:00 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:35:00 prefetch.2.10.7: 6) 'ncbi-acc:NT_033778.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:35:00 prefetch.2.10.7: 7) Downloading 'ncbi-acc:NT_033779.4?vdb-ctx=refseq'... 2020-06-21T08:35:00 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:35:18 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:35:18 prefetch.2.10.7: 7) 'ncbi-acc:NT_033779.4?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:35:18 prefetch.2.10.7: 8) Downloading 'ncbi-acc:NT_037436.3?vdb-ctx=refseq'... 2020-06-21T08:35:18 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:35:35 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:35:35 prefetch.2.10.7: 8) 'ncbi-acc:NT_037436.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:35:35 prefetch.2.10.7: 9) Downloading 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq'... 2020-06-21T08:35:35 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:35:47 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:35:47 prefetch.2.10.7: 9) 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:35:47 prefetch.2.10.7: 10) Downloading 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq'... 2020-06-21T08:35:47 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:36:01 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:36:01 prefetch.2.10.7: 10) 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:36:01 prefetch.2.10.7: 11) Downloading 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq'... 2020-06-21T08:36:01 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:36:14 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:36:14 prefetch.2.10.7: 11) 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq' was downloaded successfully Read 2103919 spots for SRR2163808/SRR2163808.sra Written 2103919 spots for SRR2163808/SRR2163808.sra 2020-06-21T08:36:33 prefetch.2.10.7: 1) Downloading 'SRR2164529'... 2020-06-21T08:36:33 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:38:42 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:38:43 prefetch.2.10.7: 'SRR2164529' is valid 2020-06-21T08:38:43 prefetch.2.10.7: 1) 'SRR2164529' was downloaded successfully 2020-06-21T08:39:34 prefetch.2.10.7: 'SRR2164529' has 10 unresolved dependencies 2020-06-21T08:39:34 prefetch.2.10.7: 2) Downloading 'ncbi-acc:NC_004353.3?vdb-ctx=refseq'... 2020-06-21T08:39:34 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:40:16 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:40:16 prefetch.2.10.7: 2) 'ncbi-acc:NC_004353.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:40:16 prefetch.2.10.7: 3) Downloading 'ncbi-acc:NC_004354.3?vdb-ctx=refseq'... 2020-06-21T08:40:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:40:34 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:40:34 prefetch.2.10.7: 3) 'ncbi-acc:NC_004354.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:40:34 prefetch.2.10.7: 4) Downloading 'ncbi-acc:NS_000188.1?vdb-ctx=refseq'... 2020-06-21T08:40:34 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:40:50 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:40:50 prefetch.2.10.7: 4) 'ncbi-acc:NS_000188.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:40:50 prefetch.2.10.7: 5) Downloading 'ncbi-acc:NT_033777.2?vdb-ctx=refseq'... 2020-06-21T08:40:50 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:41:07 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:41:07 prefetch.2.10.7: 5) 'ncbi-acc:NT_033777.2?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:41:07 prefetch.2.10.7: 6) Downloading 'ncbi-acc:NT_033778.3?vdb-ctx=refseq'... 2020-06-21T08:41:07 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:41:26 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:41:26 prefetch.2.10.7: 6) 'ncbi-acc:NT_033778.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:41:26 prefetch.2.10.7: 7) Downloading 'ncbi-acc:NT_033779.4?vdb-ctx=refseq'... 2020-06-21T08:41:26 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:41:43 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:41:43 prefetch.2.10.7: 7) 'ncbi-acc:NT_033779.4?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:41:43 prefetch.2.10.7: 8) Downloading 'ncbi-acc:NT_037436.3?vdb-ctx=refseq'... 2020-06-21T08:41:43 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:42:02 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:42:02 prefetch.2.10.7: 8) 'ncbi-acc:NT_037436.3?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:42:02 prefetch.2.10.7: 9) Downloading 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq'... 2020-06-21T08:42:02 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:42:16 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:42:16 prefetch.2.10.7: 9) 'ncbi-acc:NW_001848856.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:42:16 prefetch.2.10.7: 10) Downloading 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq'... 2020-06-21T08:42:16 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:42:30 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:42:30 prefetch.2.10.7: 10) 'ncbi-acc:NW_001848857.1?vdb-ctx=refseq' was downloaded successfully 2020-06-21T08:42:30 prefetch.2.10.7: 11) Downloading 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq'... 2020-06-21T08:42:30 prefetch.2.10.7: Downloading via HTTPS... 2020-06-21T08:42:43 prefetch.2.10.7: HTTPS download succeed 2020-06-21T08:42:43 prefetch.2.10.7: 11) 'ncbi-acc:NW_001848858.1?vdb-ctx=refseq' was downloaded successfully Read 8646040 spots for SRR2164529/SRR2164529.sra Written 8646040 spots for SRR2164529/SRR2164529.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:17 10749959 reads; of these: 10749959 (100.00%) were unpaired; of these: 225540 (2.10%) aligned 0 times 6630450 (61.68%) aligned exactly 1 time 3893969 (36.22%) aligned >1 times 97.90% overall alignment rate Time searching: 00:03:18 Overall time: 00:03:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 1870 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 1331647 / 10524419 = 0.1265 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 17:49:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 17:49:31: #1 read tag files... INFO @ Sun, 21 Jun 2020 17:49:31: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 17:49:38: 1000000 INFO @ Sun, 21 Jun 2020 17:49:44: 2000000 INFO @ Sun, 21 Jun 2020 17:49:50: 3000000 INFO @ Sun, 21 Jun 2020 17:49:57: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 17:50:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 17:50:01: #1 read tag files... INFO @ Sun, 21 Jun 2020 17:50:01: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 17:50:03: 5000000 INFO @ Sun, 21 Jun 2020 17:50:08: 1000000 INFO @ Sun, 21 Jun 2020 17:50:10: 6000000 INFO @ Sun, 21 Jun 2020 17:50:15: 2000000 INFO @ Sun, 21 Jun 2020 17:50:17: 7000000 INFO @ Sun, 21 Jun 2020 17:50:21: 3000000 INFO @ Sun, 21 Jun 2020 17:50:24: 8000000 INFO @ Sun, 21 Jun 2020 17:50:28: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sun, 21 Jun 2020 17:50:31: 9000000 INFO @ Sun, 21 Jun 2020 17:50:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 21 Jun 2020 17:50:31: #1 read tag files... INFO @ Sun, 21 Jun 2020 17:50:31: #1 read treatment tags... INFO @ Sun, 21 Jun 2020 17:50:32: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 17:50:32: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 17:50:32: #1 total tags in treatment: 9192772 INFO @ Sun, 21 Jun 2020 17:50:32: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 17:50:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 17:50:33: #1 tags after filtering in treatment: 9192682 INFO @ Sun, 21 Jun 2020 17:50:33: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 17:50:33: #1 finished! INFO @ Sun, 21 Jun 2020 17:50:33: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 17:50:33: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 17:50:33: #2 number of paired peaks: 1300 INFO @ Sun, 21 Jun 2020 17:50:33: start model_add_line... INFO @ Sun, 21 Jun 2020 17:50:33: start X-correlation... INFO @ Sun, 21 Jun 2020 17:50:33: end of X-cor INFO @ Sun, 21 Jun 2020 17:50:33: #2 finished! INFO @ Sun, 21 Jun 2020 17:50:33: #2 predicted fragment length is 52 bps INFO @ Sun, 21 Jun 2020 17:50:33: #2 alternative fragment length(s) may be 4,52 bps INFO @ Sun, 21 Jun 2020 17:50:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.05_model.r WARNING @ Sun, 21 Jun 2020 17:50:33: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 17:50:33: #2 You may need to consider one of the other alternative d(s): 4,52 WARNING @ Sun, 21 Jun 2020 17:50:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 17:50:33: #3 Call peaks... INFO @ Sun, 21 Jun 2020 17:50:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 17:50:35: 5000000 INFO @ Sun, 21 Jun 2020 17:50:38: 1000000 INFO @ Sun, 21 Jun 2020 17:50:41: 6000000 INFO @ Sun, 21 Jun 2020 17:50:44: 2000000 INFO @ Sun, 21 Jun 2020 17:50:48: 7000000 INFO @ Sun, 21 Jun 2020 17:50:50: 3000000 INFO @ Sun, 21 Jun 2020 17:50:52: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 17:50:54: 8000000 INFO @ Sun, 21 Jun 2020 17:50:56: 4000000 INFO @ Sun, 21 Jun 2020 17:51:01: 9000000 INFO @ Sun, 21 Jun 2020 17:51:01: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.05_peaks.xls INFO @ Sun, 21 Jun 2020 17:51:01: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.05_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 17:51:01: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.05_summits.bed INFO @ Sun, 21 Jun 2020 17:51:01: Done! pass1 - making usageList (654 chroms): 1 millis pass2 - checking and writing primary data (2896 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Sun, 21 Jun 2020 17:51:02: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 17:51:02: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 17:51:02: #1 total tags in treatment: 9192772 INFO @ Sun, 21 Jun 2020 17:51:02: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 17:51:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 17:51:02: #1 tags after filtering in treatment: 9192682 INFO @ Sun, 21 Jun 2020 17:51:02: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 17:51:02: #1 finished! INFO @ Sun, 21 Jun 2020 17:51:02: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 17:51:02: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 17:51:03: 5000000 INFO @ Sun, 21 Jun 2020 17:51:03: #2 number of paired peaks: 1300 INFO @ Sun, 21 Jun 2020 17:51:03: start model_add_line... INFO @ Sun, 21 Jun 2020 17:51:03: start X-correlation... INFO @ Sun, 21 Jun 2020 17:51:03: end of X-cor INFO @ Sun, 21 Jun 2020 17:51:03: #2 finished! INFO @ Sun, 21 Jun 2020 17:51:03: #2 predicted fragment length is 52 bps INFO @ Sun, 21 Jun 2020 17:51:03: #2 alternative fragment length(s) may be 4,52 bps INFO @ Sun, 21 Jun 2020 17:51:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.10_model.r WARNING @ Sun, 21 Jun 2020 17:51:03: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 17:51:03: #2 You may need to consider one of the other alternative d(s): 4,52 WARNING @ Sun, 21 Jun 2020 17:51:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 17:51:03: #3 Call peaks... INFO @ Sun, 21 Jun 2020 17:51:03: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 17:51:08: 6000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sun, 21 Jun 2020 17:51:15: 7000000 INFO @ Sun, 21 Jun 2020 17:51:20: 8000000 INFO @ Sun, 21 Jun 2020 17:51:22: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 17:51:26: 9000000 INFO @ Sun, 21 Jun 2020 17:51:27: #1 tag size is determined as 50 bps INFO @ Sun, 21 Jun 2020 17:51:27: #1 tag size = 50 INFO @ Sun, 21 Jun 2020 17:51:27: #1 total tags in treatment: 9192772 INFO @ Sun, 21 Jun 2020 17:51:27: #1 user defined the maximum tags... INFO @ Sun, 21 Jun 2020 17:51:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 21 Jun 2020 17:51:27: #1 tags after filtering in treatment: 9192682 INFO @ Sun, 21 Jun 2020 17:51:27: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 21 Jun 2020 17:51:27: #1 finished! INFO @ Sun, 21 Jun 2020 17:51:27: #2 Build Peak Model... INFO @ Sun, 21 Jun 2020 17:51:27: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 21 Jun 2020 17:51:28: #2 number of paired peaks: 1300 INFO @ Sun, 21 Jun 2020 17:51:28: start model_add_line... INFO @ Sun, 21 Jun 2020 17:51:28: start X-correlation... INFO @ Sun, 21 Jun 2020 17:51:28: end of X-cor INFO @ Sun, 21 Jun 2020 17:51:28: #2 finished! INFO @ Sun, 21 Jun 2020 17:51:28: #2 predicted fragment length is 52 bps INFO @ Sun, 21 Jun 2020 17:51:28: #2 alternative fragment length(s) may be 4,52 bps INFO @ Sun, 21 Jun 2020 17:51:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.20_model.r WARNING @ Sun, 21 Jun 2020 17:51:28: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sun, 21 Jun 2020 17:51:28: #2 You may need to consider one of the other alternative d(s): 4,52 WARNING @ Sun, 21 Jun 2020 17:51:28: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sun, 21 Jun 2020 17:51:28: #3 Call peaks... INFO @ Sun, 21 Jun 2020 17:51:28: #3 Pre-compute pvalue-qvalue table... INFO @ Sun, 21 Jun 2020 17:51:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.10_peaks.xls INFO @ Sun, 21 Jun 2020 17:51:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.10_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 17:51:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.10_summits.bed INFO @ Sun, 21 Jun 2020 17:51:31: Done! pass1 - making usageList (560 chroms): 1 millis pass2 - checking and writing primary data (2088 records, 4 fields): 16 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Sun, 21 Jun 2020 17:51:46: #3 Call peaks for each chromosome... INFO @ Sun, 21 Jun 2020 17:51:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.20_peaks.xls INFO @ Sun, 21 Jun 2020 17:51:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.20_peaks.narrowPeak INFO @ Sun, 21 Jun 2020 17:51:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm6/SRX1150357/SRX1150357.20_summits.bed INFO @ Sun, 21 Jun 2020 17:51:55: Done! pass1 - making usageList (354 chroms): 1 millis pass2 - checking and writing primary data (770 records, 4 fields): 11 millis CompletedMACS2peakCalling