Job ID = 14170680 SRX = SRX9434482 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28832662 spots for SRR12982880/SRR12982880.sra Written 28832662 spots for SRR12982880/SRR12982880.sra fastq に変換しました。 bowtie でマッピング中... Your job 14171287 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:47:50 28832662 reads; of these: 28832662 (100.00%) were paired; of these: 1731501 (6.01%) aligned concordantly 0 times 23464923 (81.38%) aligned concordantly exactly 1 time 3636238 (12.61%) aligned concordantly >1 times ---- 1731501 pairs aligned concordantly 0 times; of these: 424243 (24.50%) aligned discordantly 1 time ---- 1307258 pairs aligned 0 times concordantly or discordantly; of these: 2614516 mates make up the pairs; of these: 1339817 (51.25%) aligned 0 times 642656 (24.58%) aligned exactly 1 time 632043 (24.17%) aligned >1 times 97.68% overall alignment rate Time searching: 00:47:51 Overall time: 00:47:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2441056 / 27503683 = 0.0888 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 09:03:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 09:03:47: #1 read tag files... INFO @ Sat, 11 Dec 2021 09:03:47: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 09:03:53: 1000000 INFO @ Sat, 11 Dec 2021 09:03:58: 2000000 INFO @ Sat, 11 Dec 2021 09:04:04: 3000000 INFO @ Sat, 11 Dec 2021 09:04:09: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 09:04:15: 5000000 INFO @ Sat, 11 Dec 2021 09:04:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 09:04:17: #1 read tag files... INFO @ Sat, 11 Dec 2021 09:04:17: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 09:04:21: 6000000 INFO @ Sat, 11 Dec 2021 09:04:24: 1000000 INFO @ Sat, 11 Dec 2021 09:04:27: 7000000 INFO @ Sat, 11 Dec 2021 09:04:31: 2000000 INFO @ Sat, 11 Dec 2021 09:04:34: 8000000 INFO @ Sat, 11 Dec 2021 09:04:37: 3000000 INFO @ Sat, 11 Dec 2021 09:04:40: 9000000 INFO @ Sat, 11 Dec 2021 09:04:44: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 09:04:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 09:04:47: #1 read tag files... INFO @ Sat, 11 Dec 2021 09:04:47: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 09:04:47: 10000000 INFO @ Sat, 11 Dec 2021 09:04:51: 5000000 INFO @ Sat, 11 Dec 2021 09:04:54: 1000000 INFO @ Sat, 11 Dec 2021 09:04:55: 11000000 INFO @ Sat, 11 Dec 2021 09:04:59: 6000000 INFO @ Sat, 11 Dec 2021 09:05:01: 2000000 INFO @ Sat, 11 Dec 2021 09:05:02: 12000000 INFO @ Sat, 11 Dec 2021 09:05:06: 7000000 INFO @ Sat, 11 Dec 2021 09:05:08: 3000000 INFO @ Sat, 11 Dec 2021 09:05:09: 13000000 INFO @ Sat, 11 Dec 2021 09:05:13: 8000000 INFO @ Sat, 11 Dec 2021 09:05:14: 4000000 INFO @ Sat, 11 Dec 2021 09:05:15: 14000000 INFO @ Sat, 11 Dec 2021 09:05:20: 9000000 INFO @ Sat, 11 Dec 2021 09:05:21: 5000000 INFO @ Sat, 11 Dec 2021 09:05:22: 15000000 INFO @ Sat, 11 Dec 2021 09:05:27: 6000000 INFO @ Sat, 11 Dec 2021 09:05:27: 10000000 INFO @ Sat, 11 Dec 2021 09:05:29: 16000000 INFO @ Sat, 11 Dec 2021 09:05:34: 7000000 INFO @ Sat, 11 Dec 2021 09:05:34: 11000000 INFO @ Sat, 11 Dec 2021 09:05:36: 17000000 INFO @ Sat, 11 Dec 2021 09:05:41: 12000000 INFO @ Sat, 11 Dec 2021 09:05:41: 8000000 INFO @ Sat, 11 Dec 2021 09:05:44: 18000000 INFO @ Sat, 11 Dec 2021 09:05:48: 13000000 INFO @ Sat, 11 Dec 2021 09:05:48: 9000000 INFO @ Sat, 11 Dec 2021 09:05:51: 19000000 INFO @ Sat, 11 Dec 2021 09:05:54: 14000000 INFO @ Sat, 11 Dec 2021 09:05:55: 10000000 INFO @ Sat, 11 Dec 2021 09:05:58: 20000000 INFO @ Sat, 11 Dec 2021 09:06:01: 15000000 INFO @ Sat, 11 Dec 2021 09:06:02: 11000000 INFO @ Sat, 11 Dec 2021 09:06:06: 21000000 INFO @ Sat, 11 Dec 2021 09:06:07: 16000000 INFO @ Sat, 11 Dec 2021 09:06:09: 12000000 INFO @ Sat, 11 Dec 2021 09:06:12: 22000000 INFO @ Sat, 11 Dec 2021 09:06:14: 17000000 INFO @ Sat, 11 Dec 2021 09:06:16: 13000000 INFO @ Sat, 11 Dec 2021 09:06:19: 23000000 INFO @ Sat, 11 Dec 2021 09:06:21: 18000000 INFO @ Sat, 11 Dec 2021 09:06:22: 14000000 INFO @ Sat, 11 Dec 2021 09:06:26: 24000000 INFO @ Sat, 11 Dec 2021 09:06:27: 19000000 INFO @ Sat, 11 Dec 2021 09:06:29: 15000000 INFO @ Sat, 11 Dec 2021 09:06:33: 25000000 INFO @ Sat, 11 Dec 2021 09:06:34: 20000000 INFO @ Sat, 11 Dec 2021 09:06:35: 16000000 INFO @ Sat, 11 Dec 2021 09:06:39: 26000000 INFO @ Sat, 11 Dec 2021 09:06:40: 21000000 INFO @ Sat, 11 Dec 2021 09:06:42: 17000000 INFO @ Sat, 11 Dec 2021 09:06:46: 27000000 INFO @ Sat, 11 Dec 2021 09:06:47: 22000000 INFO @ Sat, 11 Dec 2021 09:06:48: 18000000 INFO @ Sat, 11 Dec 2021 09:06:53: 28000000 INFO @ Sat, 11 Dec 2021 09:06:54: 23000000 INFO @ Sat, 11 Dec 2021 09:06:55: 19000000 INFO @ Sat, 11 Dec 2021 09:07:00: 29000000 INFO @ Sat, 11 Dec 2021 09:07:00: 24000000 INFO @ Sat, 11 Dec 2021 09:07:02: 20000000 INFO @ Sat, 11 Dec 2021 09:07:06: 30000000 INFO @ Sat, 11 Dec 2021 09:07:07: 25000000 INFO @ Sat, 11 Dec 2021 09:07:08: 21000000 INFO @ Sat, 11 Dec 2021 09:07:13: 31000000 INFO @ Sat, 11 Dec 2021 09:07:14: 26000000 INFO @ Sat, 11 Dec 2021 09:07:15: 22000000 INFO @ Sat, 11 Dec 2021 09:07:20: 32000000 INFO @ Sat, 11 Dec 2021 09:07:21: 27000000 INFO @ Sat, 11 Dec 2021 09:07:22: 23000000 INFO @ Sat, 11 Dec 2021 09:07:27: 33000000 INFO @ Sat, 11 Dec 2021 09:07:27: 28000000 INFO @ Sat, 11 Dec 2021 09:07:28: 24000000 INFO @ Sat, 11 Dec 2021 09:07:34: 34000000 INFO @ Sat, 11 Dec 2021 09:07:34: 29000000 INFO @ Sat, 11 Dec 2021 09:07:35: 25000000 INFO @ Sat, 11 Dec 2021 09:07:40: 35000000 INFO @ Sat, 11 Dec 2021 09:07:40: 30000000 INFO @ Sat, 11 Dec 2021 09:07:42: 26000000 INFO @ Sat, 11 Dec 2021 09:07:47: 31000000 INFO @ Sat, 11 Dec 2021 09:07:47: 36000000 INFO @ Sat, 11 Dec 2021 09:07:48: 27000000 INFO @ Sat, 11 Dec 2021 09:07:54: 32000000 INFO @ Sat, 11 Dec 2021 09:07:54: 37000000 INFO @ Sat, 11 Dec 2021 09:07:55: 28000000 INFO @ Sat, 11 Dec 2021 09:08:00: 33000000 INFO @ Sat, 11 Dec 2021 09:08:00: 38000000 INFO @ Sat, 11 Dec 2021 09:08:02: 29000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 09:08:07: 34000000 INFO @ Sat, 11 Dec 2021 09:08:07: 39000000 INFO @ Sat, 11 Dec 2021 09:08:08: 30000000 INFO @ Sat, 11 Dec 2021 09:08:13: 35000000 INFO @ Sat, 11 Dec 2021 09:08:14: 40000000 INFO @ Sat, 11 Dec 2021 09:08:15: 31000000 INFO @ Sat, 11 Dec 2021 09:08:20: 36000000 INFO @ Sat, 11 Dec 2021 09:08:21: 41000000 INFO @ Sat, 11 Dec 2021 09:08:22: 32000000 INFO @ Sat, 11 Dec 2021 09:08:27: 37000000 INFO @ Sat, 11 Dec 2021 09:08:27: 42000000 INFO @ Sat, 11 Dec 2021 09:08:28: 33000000 INFO @ Sat, 11 Dec 2021 09:08:33: 38000000 INFO @ Sat, 11 Dec 2021 09:08:34: 43000000 INFO @ Sat, 11 Dec 2021 09:08:35: 34000000 INFO @ Sat, 11 Dec 2021 09:08:40: 39000000 INFO @ Sat, 11 Dec 2021 09:08:40: 44000000 INFO @ Sat, 11 Dec 2021 09:08:41: 35000000 INFO @ Sat, 11 Dec 2021 09:08:46: 40000000 INFO @ Sat, 11 Dec 2021 09:08:47: 45000000 INFO @ Sat, 11 Dec 2021 09:08:48: 36000000 INFO @ Sat, 11 Dec 2021 09:08:52: 41000000 INFO @ Sat, 11 Dec 2021 09:08:53: 46000000 INFO @ Sat, 11 Dec 2021 09:08:54: 37000000 INFO @ Sat, 11 Dec 2021 09:08:59: 42000000 INFO @ Sat, 11 Dec 2021 09:09:00: 47000000 INFO @ Sat, 11 Dec 2021 09:09:01: 38000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 09:09:06: 43000000 INFO @ Sat, 11 Dec 2021 09:09:07: 48000000 INFO @ Sat, 11 Dec 2021 09:09:08: 39000000 INFO @ Sat, 11 Dec 2021 09:09:12: 44000000 INFO @ Sat, 11 Dec 2021 09:09:13: 49000000 INFO @ Sat, 11 Dec 2021 09:09:14: 40000000 INFO @ Sat, 11 Dec 2021 09:09:19: 45000000 INFO @ Sat, 11 Dec 2021 09:09:20: 50000000 INFO @ Sat, 11 Dec 2021 09:09:21: 41000000 INFO @ Sat, 11 Dec 2021 09:09:26: 46000000 INFO @ Sat, 11 Dec 2021 09:09:26: 51000000 INFO @ Sat, 11 Dec 2021 09:09:27: 42000000 INFO @ Sat, 11 Dec 2021 09:09:29: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 09:09:29: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 09:09:29: #1 total tags in treatment: 24699884 INFO @ Sat, 11 Dec 2021 09:09:29: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 09:09:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 09:09:30: #1 tags after filtering in treatment: 17318424 INFO @ Sat, 11 Dec 2021 09:09:30: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 09:09:30: #1 finished! INFO @ Sat, 11 Dec 2021 09:09:30: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 09:09:30: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 09:09:32: #2 number of paired peaks: 13909 INFO @ Sat, 11 Dec 2021 09:09:32: start model_add_line... INFO @ Sat, 11 Dec 2021 09:09:32: 47000000 INFO @ Sat, 11 Dec 2021 09:09:33: start X-correlation... INFO @ Sat, 11 Dec 2021 09:09:33: end of X-cor INFO @ Sat, 11 Dec 2021 09:09:33: #2 finished! INFO @ Sat, 11 Dec 2021 09:09:33: #2 predicted fragment length is 160 bps INFO @ Sat, 11 Dec 2021 09:09:33: #2 alternative fragment length(s) may be 160 bps INFO @ Sat, 11 Dec 2021 09:09:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.05_model.r INFO @ Sat, 11 Dec 2021 09:09:33: #3 Call peaks... INFO @ Sat, 11 Dec 2021 09:09:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 09:09:33: 43000000 INFO @ Sat, 11 Dec 2021 09:09:39: 48000000 INFO @ Sat, 11 Dec 2021 09:09:39: 44000000 INFO @ Sat, 11 Dec 2021 09:09:45: 45000000 INFO @ Sat, 11 Dec 2021 09:09:45: 49000000 INFO @ Sat, 11 Dec 2021 09:09:50: 46000000 INFO @ Sat, 11 Dec 2021 09:09:52: 50000000 INFO @ Sat, 11 Dec 2021 09:09:56: 47000000 INFO @ Sat, 11 Dec 2021 09:09:59: 51000000 INFO @ Sat, 11 Dec 2021 09:10:02: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 09:10:02: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 09:10:02: #1 total tags in treatment: 24699884 INFO @ Sat, 11 Dec 2021 09:10:02: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 09:10:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 09:10:02: 48000000 INFO @ Sat, 11 Dec 2021 09:10:02: #1 tags after filtering in treatment: 17318424 INFO @ Sat, 11 Dec 2021 09:10:02: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 09:10:02: #1 finished! INFO @ Sat, 11 Dec 2021 09:10:02: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 09:10:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 09:10:05: #2 number of paired peaks: 13909 INFO @ Sat, 11 Dec 2021 09:10:05: start model_add_line... INFO @ Sat, 11 Dec 2021 09:10:05: start X-correlation... INFO @ Sat, 11 Dec 2021 09:10:05: end of X-cor INFO @ Sat, 11 Dec 2021 09:10:05: #2 finished! INFO @ Sat, 11 Dec 2021 09:10:05: #2 predicted fragment length is 160 bps INFO @ Sat, 11 Dec 2021 09:10:05: #2 alternative fragment length(s) may be 160 bps INFO @ Sat, 11 Dec 2021 09:10:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.10_model.r INFO @ Sat, 11 Dec 2021 09:10:05: #3 Call peaks... INFO @ Sat, 11 Dec 2021 09:10:05: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 09:10:07: 49000000 INFO @ Sat, 11 Dec 2021 09:10:13: 50000000 INFO @ Sat, 11 Dec 2021 09:10:19: 51000000 INFO @ Sat, 11 Dec 2021 09:10:21: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 09:10:21: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 09:10:21: #1 total tags in treatment: 24699884 INFO @ Sat, 11 Dec 2021 09:10:21: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 09:10:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 09:10:22: #1 tags after filtering in treatment: 17318424 INFO @ Sat, 11 Dec 2021 09:10:22: #1 Redundant rate of treatment: 0.30 INFO @ Sat, 11 Dec 2021 09:10:22: #1 finished! INFO @ Sat, 11 Dec 2021 09:10:22: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 09:10:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 09:10:24: #2 number of paired peaks: 13909 INFO @ Sat, 11 Dec 2021 09:10:24: start model_add_line... INFO @ Sat, 11 Dec 2021 09:10:25: start X-correlation... INFO @ Sat, 11 Dec 2021 09:10:25: end of X-cor INFO @ Sat, 11 Dec 2021 09:10:25: #2 finished! INFO @ Sat, 11 Dec 2021 09:10:25: #2 predicted fragment length is 160 bps INFO @ Sat, 11 Dec 2021 09:10:25: #2 alternative fragment length(s) may be 160 bps INFO @ Sat, 11 Dec 2021 09:10:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.20_model.r INFO @ Sat, 11 Dec 2021 09:10:25: #3 Call peaks... INFO @ Sat, 11 Dec 2021 09:10:25: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 09:10:27: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 09:10:46: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.05_peaks.xls INFO @ Sat, 11 Dec 2021 09:10:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 09:10:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.05_summits.bed INFO @ Sat, 11 Dec 2021 09:10:47: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (12655 records, 4 fields): 44 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 09:10:59: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 09:11:19: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 09:11:19: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.10_peaks.xls INFO @ Sat, 11 Dec 2021 09:11:19: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 09:11:19: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.10_summits.bed INFO @ Sat, 11 Dec 2021 09:11:19: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (10770 records, 4 fields): 35 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 09:11:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.20_peaks.xls INFO @ Sat, 11 Dec 2021 09:11:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 09:11:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9434482/SRX9434482.20_summits.bed INFO @ Sat, 11 Dec 2021 09:11:38: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (8420 records, 4 fields): 12 millis CompletedMACS2peakCalling