Job ID = 14171755 SRX = SRX9008828 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 38856323 spots for SRR12518300/SRR12518300.sra Written 38856323 spots for SRR12518300/SRR12518300.sra fastq に変換しました。 bowtie でマッピング中... Your job 14172753 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:20:53 38856323 reads; of these: 38856323 (100.00%) were paired; of these: 4788521 (12.32%) aligned concordantly 0 times 12358103 (31.80%) aligned concordantly exactly 1 time 21709699 (55.87%) aligned concordantly >1 times ---- 4788521 pairs aligned concordantly 0 times; of these: 1094837 (22.86%) aligned discordantly 1 time ---- 3693684 pairs aligned 0 times concordantly or discordantly; of these: 7387368 mates make up the pairs; of these: 1271376 (17.21%) aligned 0 times 1095172 (14.82%) aligned exactly 1 time 5020820 (67.96%) aligned >1 times 98.36% overall alignment rate Time searching: 02:20:53 Overall time: 02:20:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1765701 / 35073355 = 0.0503 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 15:24:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 15:24:06: #1 read tag files... INFO @ Sat, 11 Dec 2021 15:24:06: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 15:24:12: 1000000 INFO @ Sat, 11 Dec 2021 15:24:17: 2000000 INFO @ Sat, 11 Dec 2021 15:24:22: 3000000 INFO @ Sat, 11 Dec 2021 15:24:27: 4000000 INFO @ Sat, 11 Dec 2021 15:24:32: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 15:24:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 15:24:36: #1 read tag files... INFO @ Sat, 11 Dec 2021 15:24:36: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 15:24:37: 6000000 INFO @ Sat, 11 Dec 2021 15:24:42: 1000000 INFO @ Sat, 11 Dec 2021 15:24:43: 7000000 INFO @ Sat, 11 Dec 2021 15:24:49: 2000000 INFO @ Sat, 11 Dec 2021 15:24:49: 8000000 INFO @ Sat, 11 Dec 2021 15:24:55: 3000000 INFO @ Sat, 11 Dec 2021 15:24:55: 9000000 INFO @ Sat, 11 Dec 2021 15:25:01: 4000000 INFO @ Sat, 11 Dec 2021 15:25:01: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 15:25:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 15:25:06: #1 read tag files... INFO @ Sat, 11 Dec 2021 15:25:06: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 15:25:07: 5000000 INFO @ Sat, 11 Dec 2021 15:25:07: 11000000 INFO @ Sat, 11 Dec 2021 15:25:12: 1000000 INFO @ Sat, 11 Dec 2021 15:25:13: 6000000 INFO @ Sat, 11 Dec 2021 15:25:14: 12000000 INFO @ Sat, 11 Dec 2021 15:25:18: 2000000 INFO @ Sat, 11 Dec 2021 15:25:19: 7000000 INFO @ Sat, 11 Dec 2021 15:25:20: 13000000 INFO @ Sat, 11 Dec 2021 15:25:24: 3000000 INFO @ Sat, 11 Dec 2021 15:25:25: 8000000 INFO @ Sat, 11 Dec 2021 15:25:26: 14000000 INFO @ Sat, 11 Dec 2021 15:25:30: 4000000 INFO @ Sat, 11 Dec 2021 15:25:31: 9000000 INFO @ Sat, 11 Dec 2021 15:25:32: 15000000 INFO @ Sat, 11 Dec 2021 15:25:36: 5000000 INFO @ Sat, 11 Dec 2021 15:25:37: 10000000 INFO @ Sat, 11 Dec 2021 15:25:38: 16000000 INFO @ Sat, 11 Dec 2021 15:25:42: 6000000 INFO @ Sat, 11 Dec 2021 15:25:43: 11000000 INFO @ Sat, 11 Dec 2021 15:25:44: 17000000 INFO @ Sat, 11 Dec 2021 15:25:48: 7000000 INFO @ Sat, 11 Dec 2021 15:25:48: 12000000 INFO @ Sat, 11 Dec 2021 15:25:50: 18000000 INFO @ Sat, 11 Dec 2021 15:25:54: 8000000 INFO @ Sat, 11 Dec 2021 15:25:54: 13000000 INFO @ Sat, 11 Dec 2021 15:25:56: 19000000 INFO @ Sat, 11 Dec 2021 15:26:00: 9000000 INFO @ Sat, 11 Dec 2021 15:26:00: 14000000 INFO @ Sat, 11 Dec 2021 15:26:01: 20000000 INFO @ Sat, 11 Dec 2021 15:26:06: 10000000 INFO @ Sat, 11 Dec 2021 15:26:06: 15000000 INFO @ Sat, 11 Dec 2021 15:26:07: 21000000 INFO @ Sat, 11 Dec 2021 15:26:12: 11000000 INFO @ Sat, 11 Dec 2021 15:26:12: 16000000 INFO @ Sat, 11 Dec 2021 15:26:13: 22000000 INFO @ Sat, 11 Dec 2021 15:26:18: 12000000 INFO @ Sat, 11 Dec 2021 15:26:18: 17000000 INFO @ Sat, 11 Dec 2021 15:26:19: 23000000 INFO @ Sat, 11 Dec 2021 15:26:24: 13000000 INFO @ Sat, 11 Dec 2021 15:26:24: 18000000 INFO @ Sat, 11 Dec 2021 15:26:25: 24000000 INFO @ Sat, 11 Dec 2021 15:26:30: 14000000 INFO @ Sat, 11 Dec 2021 15:26:30: 19000000 INFO @ Sat, 11 Dec 2021 15:26:32: 25000000 INFO @ Sat, 11 Dec 2021 15:26:35: 15000000 INFO @ Sat, 11 Dec 2021 15:26:36: 20000000 INFO @ Sat, 11 Dec 2021 15:26:38: 26000000 INFO @ Sat, 11 Dec 2021 15:26:41: 16000000 INFO @ Sat, 11 Dec 2021 15:26:42: 21000000 INFO @ Sat, 11 Dec 2021 15:26:44: 27000000 INFO @ Sat, 11 Dec 2021 15:26:47: 17000000 INFO @ Sat, 11 Dec 2021 15:26:48: 22000000 INFO @ Sat, 11 Dec 2021 15:26:49: 28000000 INFO @ Sat, 11 Dec 2021 15:26:53: 18000000 INFO @ Sat, 11 Dec 2021 15:26:54: 23000000 INFO @ Sat, 11 Dec 2021 15:26:55: 29000000 INFO @ Sat, 11 Dec 2021 15:26:59: 19000000 INFO @ Sat, 11 Dec 2021 15:27:00: 24000000 INFO @ Sat, 11 Dec 2021 15:27:01: 30000000 INFO @ Sat, 11 Dec 2021 15:27:05: 20000000 INFO @ Sat, 11 Dec 2021 15:27:06: 25000000 INFO @ Sat, 11 Dec 2021 15:27:07: 31000000 INFO @ Sat, 11 Dec 2021 15:27:11: 21000000 INFO @ Sat, 11 Dec 2021 15:27:12: 26000000 INFO @ Sat, 11 Dec 2021 15:27:13: 32000000 INFO @ Sat, 11 Dec 2021 15:27:17: 22000000 INFO @ Sat, 11 Dec 2021 15:27:18: 27000000 INFO @ Sat, 11 Dec 2021 15:27:19: 33000000 INFO @ Sat, 11 Dec 2021 15:27:22: 23000000 INFO @ Sat, 11 Dec 2021 15:27:24: 28000000 INFO @ Sat, 11 Dec 2021 15:27:25: 34000000 INFO @ Sat, 11 Dec 2021 15:27:28: 24000000 INFO @ Sat, 11 Dec 2021 15:27:30: 29000000 INFO @ Sat, 11 Dec 2021 15:27:31: 35000000 INFO @ Sat, 11 Dec 2021 15:27:34: 25000000 INFO @ Sat, 11 Dec 2021 15:27:35: 30000000 INFO @ Sat, 11 Dec 2021 15:27:37: 36000000 INFO @ Sat, 11 Dec 2021 15:27:40: 26000000 INFO @ Sat, 11 Dec 2021 15:27:41: 31000000 INFO @ Sat, 11 Dec 2021 15:27:43: 37000000 INFO @ Sat, 11 Dec 2021 15:27:46: 27000000 INFO @ Sat, 11 Dec 2021 15:27:47: 32000000 INFO @ Sat, 11 Dec 2021 15:27:49: 38000000 INFO @ Sat, 11 Dec 2021 15:27:52: 28000000 INFO @ Sat, 11 Dec 2021 15:27:53: 33000000 INFO @ Sat, 11 Dec 2021 15:27:55: 39000000 INFO @ Sat, 11 Dec 2021 15:27:58: 29000000 INFO @ Sat, 11 Dec 2021 15:27:59: 34000000 INFO @ Sat, 11 Dec 2021 15:28:01: 40000000 INFO @ Sat, 11 Dec 2021 15:28:04: 30000000 INFO @ Sat, 11 Dec 2021 15:28:05: 35000000 INFO @ Sat, 11 Dec 2021 15:28:07: 41000000 INFO @ Sat, 11 Dec 2021 15:28:10: 31000000 INFO @ Sat, 11 Dec 2021 15:28:11: 36000000 INFO @ Sat, 11 Dec 2021 15:28:13: 42000000 INFO @ Sat, 11 Dec 2021 15:28:16: 32000000 INFO @ Sat, 11 Dec 2021 15:28:17: 37000000 INFO @ Sat, 11 Dec 2021 15:28:19: 43000000 INFO @ Sat, 11 Dec 2021 15:28:21: 33000000 INFO @ Sat, 11 Dec 2021 15:28:23: 38000000 INFO @ Sat, 11 Dec 2021 15:28:25: 44000000 INFO @ Sat, 11 Dec 2021 15:28:27: 34000000 INFO @ Sat, 11 Dec 2021 15:28:29: 39000000 INFO @ Sat, 11 Dec 2021 15:28:31: 45000000 INFO @ Sat, 11 Dec 2021 15:28:33: 35000000 INFO @ Sat, 11 Dec 2021 15:28:35: 40000000 INFO @ Sat, 11 Dec 2021 15:28:37: 46000000 INFO @ Sat, 11 Dec 2021 15:28:39: 36000000 INFO @ Sat, 11 Dec 2021 15:28:41: 41000000 INFO @ Sat, 11 Dec 2021 15:28:43: 47000000 INFO @ Sat, 11 Dec 2021 15:28:45: 37000000 INFO @ Sat, 11 Dec 2021 15:28:47: 42000000 INFO @ Sat, 11 Dec 2021 15:28:49: 48000000 INFO @ Sat, 11 Dec 2021 15:28:51: 38000000 INFO @ Sat, 11 Dec 2021 15:28:53: 43000000 INFO @ Sat, 11 Dec 2021 15:28:55: 49000000 INFO @ Sat, 11 Dec 2021 15:28:57: 39000000 INFO @ Sat, 11 Dec 2021 15:28:59: 44000000 INFO @ Sat, 11 Dec 2021 15:29:01: 50000000 INFO @ Sat, 11 Dec 2021 15:29:03: 40000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 15:29:05: 45000000 INFO @ Sat, 11 Dec 2021 15:29:07: 51000000 INFO @ Sat, 11 Dec 2021 15:29:09: 41000000 INFO @ Sat, 11 Dec 2021 15:29:11: 46000000 INFO @ Sat, 11 Dec 2021 15:29:13: 52000000 INFO @ Sat, 11 Dec 2021 15:29:14: 42000000 INFO @ Sat, 11 Dec 2021 15:29:17: 47000000 INFO @ Sat, 11 Dec 2021 15:29:19: 53000000 INFO @ Sat, 11 Dec 2021 15:29:20: 43000000 INFO @ Sat, 11 Dec 2021 15:29:23: 48000000 INFO @ Sat, 11 Dec 2021 15:29:25: 54000000 INFO @ Sat, 11 Dec 2021 15:29:26: 44000000 INFO @ Sat, 11 Dec 2021 15:29:29: 49000000 INFO @ Sat, 11 Dec 2021 15:29:31: 55000000 INFO @ Sat, 11 Dec 2021 15:29:32: 45000000 INFO @ Sat, 11 Dec 2021 15:29:35: 50000000 INFO @ Sat, 11 Dec 2021 15:29:38: 56000000 INFO @ Sat, 11 Dec 2021 15:29:38: 46000000 INFO @ Sat, 11 Dec 2021 15:29:41: 51000000 INFO @ Sat, 11 Dec 2021 15:29:44: 57000000 INFO @ Sat, 11 Dec 2021 15:29:44: 47000000 INFO @ Sat, 11 Dec 2021 15:29:47: 52000000 INFO @ Sat, 11 Dec 2021 15:29:50: 58000000 INFO @ Sat, 11 Dec 2021 15:29:50: 48000000 INFO @ Sat, 11 Dec 2021 15:29:53: 53000000 INFO @ Sat, 11 Dec 2021 15:29:56: 59000000 INFO @ Sat, 11 Dec 2021 15:29:56: 49000000 INFO @ Sat, 11 Dec 2021 15:29:59: 54000000 INFO @ Sat, 11 Dec 2021 15:30:02: 60000000 INFO @ Sat, 11 Dec 2021 15:30:02: 50000000 INFO @ Sat, 11 Dec 2021 15:30:05: 55000000 INFO @ Sat, 11 Dec 2021 15:30:08: 61000000 INFO @ Sat, 11 Dec 2021 15:30:08: 51000000 INFO @ Sat, 11 Dec 2021 15:30:11: 56000000 INFO @ Sat, 11 Dec 2021 15:30:14: 52000000 INFO @ Sat, 11 Dec 2021 15:30:14: 62000000 INFO @ Sat, 11 Dec 2021 15:30:17: 57000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 15:30:20: 53000000 INFO @ Sat, 11 Dec 2021 15:30:20: 63000000 INFO @ Sat, 11 Dec 2021 15:30:23: 58000000 INFO @ Sat, 11 Dec 2021 15:30:26: 54000000 INFO @ Sat, 11 Dec 2021 15:30:26: 64000000 INFO @ Sat, 11 Dec 2021 15:30:29: 59000000 INFO @ Sat, 11 Dec 2021 15:30:32: 55000000 INFO @ Sat, 11 Dec 2021 15:30:32: 65000000 INFO @ Sat, 11 Dec 2021 15:30:35: 60000000 INFO @ Sat, 11 Dec 2021 15:30:38: 56000000 INFO @ Sat, 11 Dec 2021 15:30:38: 66000000 INFO @ Sat, 11 Dec 2021 15:30:41: 61000000 INFO @ Sat, 11 Dec 2021 15:30:44: 57000000 INFO @ Sat, 11 Dec 2021 15:30:44: 67000000 INFO @ Sat, 11 Dec 2021 15:30:47: 62000000 INFO @ Sat, 11 Dec 2021 15:30:50: 58000000 INFO @ Sat, 11 Dec 2021 15:30:50: 68000000 INFO @ Sat, 11 Dec 2021 15:30:53: 63000000 INFO @ Sat, 11 Dec 2021 15:30:55: 59000000 INFO @ Sat, 11 Dec 2021 15:30:56: 69000000 INFO @ Sat, 11 Dec 2021 15:30:59: 64000000 INFO @ Sat, 11 Dec 2021 15:31:01: 60000000 INFO @ Sat, 11 Dec 2021 15:31:02: 70000000 INFO @ Sat, 11 Dec 2021 15:31:05: 65000000 INFO @ Sat, 11 Dec 2021 15:31:07: 61000000 INFO @ Sat, 11 Dec 2021 15:31:08: 71000000 INFO @ Sat, 11 Dec 2021 15:31:11: 66000000 INFO @ Sat, 11 Dec 2021 15:31:13: 62000000 INFO @ Sat, 11 Dec 2021 15:31:14: 72000000 INFO @ Sat, 11 Dec 2021 15:31:17: 67000000 INFO @ Sat, 11 Dec 2021 15:31:19: 63000000 INFO @ Sat, 11 Dec 2021 15:31:20: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 15:31:20: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 15:31:20: #1 total tags in treatment: 32317608 INFO @ Sat, 11 Dec 2021 15:31:20: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 15:31:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 15:31:20: #1 tags after filtering in treatment: 25389947 INFO @ Sat, 11 Dec 2021 15:31:20: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 11 Dec 2021 15:31:20: #1 finished! INFO @ Sat, 11 Dec 2021 15:31:20: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 15:31:20: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 15:31:22: #2 number of paired peaks: 2084 INFO @ Sat, 11 Dec 2021 15:31:22: start model_add_line... INFO @ Sat, 11 Dec 2021 15:31:22: start X-correlation... INFO @ Sat, 11 Dec 2021 15:31:22: end of X-cor INFO @ Sat, 11 Dec 2021 15:31:22: #2 finished! INFO @ Sat, 11 Dec 2021 15:31:22: #2 predicted fragment length is 258 bps INFO @ Sat, 11 Dec 2021 15:31:22: #2 alternative fragment length(s) may be 4,246,258 bps INFO @ Sat, 11 Dec 2021 15:31:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.05_model.r INFO @ Sat, 11 Dec 2021 15:31:22: #3 Call peaks... INFO @ Sat, 11 Dec 2021 15:31:22: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 15:31:23: 68000000 INFO @ Sat, 11 Dec 2021 15:31:25: 64000000 INFO @ Sat, 11 Dec 2021 15:31:29: 69000000 INFO @ Sat, 11 Dec 2021 15:31:32: 65000000 INFO @ Sat, 11 Dec 2021 15:31:35: 70000000 INFO @ Sat, 11 Dec 2021 15:31:37: 66000000 INFO @ Sat, 11 Dec 2021 15:31:41: 71000000 INFO @ Sat, 11 Dec 2021 15:31:43: 67000000 INFO @ Sat, 11 Dec 2021 15:31:47: 72000000 INFO @ Sat, 11 Dec 2021 15:31:49: 68000000 INFO @ Sat, 11 Dec 2021 15:31:52: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 15:31:52: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 15:31:52: #1 total tags in treatment: 32317608 INFO @ Sat, 11 Dec 2021 15:31:52: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 15:31:52: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 15:31:53: #1 tags after filtering in treatment: 25389947 INFO @ Sat, 11 Dec 2021 15:31:53: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 11 Dec 2021 15:31:53: #1 finished! INFO @ Sat, 11 Dec 2021 15:31:53: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 15:31:53: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 15:31:54: #2 number of paired peaks: 2084 INFO @ Sat, 11 Dec 2021 15:31:54: start model_add_line... INFO @ Sat, 11 Dec 2021 15:31:55: start X-correlation... INFO @ Sat, 11 Dec 2021 15:31:55: end of X-cor INFO @ Sat, 11 Dec 2021 15:31:55: #2 finished! INFO @ Sat, 11 Dec 2021 15:31:55: #2 predicted fragment length is 258 bps INFO @ Sat, 11 Dec 2021 15:31:55: #2 alternative fragment length(s) may be 4,246,258 bps INFO @ Sat, 11 Dec 2021 15:31:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.10_model.r INFO @ Sat, 11 Dec 2021 15:31:55: #3 Call peaks... INFO @ Sat, 11 Dec 2021 15:31:55: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 15:31:55: 69000000 INFO @ Sat, 11 Dec 2021 15:32:01: 70000000 INFO @ Sat, 11 Dec 2021 15:32:06: 71000000 INFO @ Sat, 11 Dec 2021 15:32:12: 72000000 INFO @ Sat, 11 Dec 2021 15:32:17: #1 tag size is determined as 50 bps INFO @ Sat, 11 Dec 2021 15:32:17: #1 tag size = 50 INFO @ Sat, 11 Dec 2021 15:32:17: #1 total tags in treatment: 32317608 INFO @ Sat, 11 Dec 2021 15:32:17: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 15:32:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 15:32:17: #1 tags after filtering in treatment: 25389947 INFO @ Sat, 11 Dec 2021 15:32:17: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 11 Dec 2021 15:32:17: #1 finished! INFO @ Sat, 11 Dec 2021 15:32:17: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 15:32:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 15:32:19: #2 number of paired peaks: 2084 INFO @ Sat, 11 Dec 2021 15:32:19: start model_add_line... INFO @ Sat, 11 Dec 2021 15:32:19: start X-correlation... INFO @ Sat, 11 Dec 2021 15:32:19: end of X-cor INFO @ Sat, 11 Dec 2021 15:32:19: #2 finished! INFO @ Sat, 11 Dec 2021 15:32:19: #2 predicted fragment length is 258 bps INFO @ Sat, 11 Dec 2021 15:32:19: #2 alternative fragment length(s) may be 4,246,258 bps INFO @ Sat, 11 Dec 2021 15:32:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.20_model.r INFO @ Sat, 11 Dec 2021 15:32:19: #3 Call peaks... INFO @ Sat, 11 Dec 2021 15:32:19: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 15:32:33: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 15:33:01: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 15:33:02: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.05_peaks.xls INFO @ Sat, 11 Dec 2021 15:33:02: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 15:33:02: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.05_summits.bed INFO @ Sat, 11 Dec 2021 15:33:02: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (18377 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 15:33:27: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 15:33:28: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.10_peaks.xls INFO @ Sat, 11 Dec 2021 15:33:28: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 15:33:29: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.10_summits.bed INFO @ Sat, 11 Dec 2021 15:33:29: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (12949 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 15:33:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.20_peaks.xls INFO @ Sat, 11 Dec 2021 15:33:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 15:33:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX9008828/SRX9008828.20_summits.bed INFO @ Sat, 11 Dec 2021 15:33:54: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (7570 records, 4 fields): 8 millis CompletedMACS2peakCalling