Job ID = 14166942 SRX = SRX8755941 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28855083 spots for SRR12248078/SRR12248078.sra Written 28855083 spots for SRR12248078/SRR12248078.sra fastq に変換しました。 bowtie でマッピング中... Your job 14167332 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:31:57 28855083 reads; of these: 28855083 (100.00%) were paired; of these: 7890190 (27.34%) aligned concordantly 0 times 17617453 (61.05%) aligned concordantly exactly 1 time 3347440 (11.60%) aligned concordantly >1 times ---- 7890190 pairs aligned concordantly 0 times; of these: 3039459 (38.52%) aligned discordantly 1 time ---- 4850731 pairs aligned 0 times concordantly or discordantly; of these: 9701462 mates make up the pairs; of these: 7553985 (77.86%) aligned 0 times 1148426 (11.84%) aligned exactly 1 time 999051 (10.30%) aligned >1 times 86.91% overall alignment rate Time searching: 00:31:57 Overall time: 00:31:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2413112 / 23628099 = 0.1021 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 08:50:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 08:50:01: #1 read tag files... INFO @ Fri, 10 Dec 2021 08:50:01: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 08:50:07: 1000000 INFO @ Fri, 10 Dec 2021 08:50:12: 2000000 INFO @ Fri, 10 Dec 2021 08:50:17: 3000000 INFO @ Fri, 10 Dec 2021 08:50:22: 4000000 INFO @ Fri, 10 Dec 2021 08:50:28: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 08:50:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 08:50:30: #1 read tag files... INFO @ Fri, 10 Dec 2021 08:50:30: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 08:50:34: 6000000 INFO @ Fri, 10 Dec 2021 08:50:38: 1000000 INFO @ Fri, 10 Dec 2021 08:50:41: 7000000 INFO @ Fri, 10 Dec 2021 08:50:46: 2000000 INFO @ Fri, 10 Dec 2021 08:50:48: 8000000 INFO @ Fri, 10 Dec 2021 08:50:53: 3000000 INFO @ Fri, 10 Dec 2021 08:50:55: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 08:51:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 08:51:00: #1 read tag files... INFO @ Fri, 10 Dec 2021 08:51:00: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 08:51:01: 4000000 INFO @ Fri, 10 Dec 2021 08:51:02: 10000000 INFO @ Fri, 10 Dec 2021 08:51:07: 1000000 INFO @ Fri, 10 Dec 2021 08:51:09: 11000000 INFO @ Fri, 10 Dec 2021 08:51:09: 5000000 INFO @ Fri, 10 Dec 2021 08:51:14: 2000000 INFO @ Fri, 10 Dec 2021 08:51:16: 12000000 INFO @ Fri, 10 Dec 2021 08:51:17: 6000000 INFO @ Fri, 10 Dec 2021 08:51:21: 3000000 INFO @ Fri, 10 Dec 2021 08:51:23: 13000000 INFO @ Fri, 10 Dec 2021 08:51:25: 7000000 INFO @ Fri, 10 Dec 2021 08:51:28: 4000000 INFO @ Fri, 10 Dec 2021 08:51:30: 14000000 INFO @ Fri, 10 Dec 2021 08:51:32: 8000000 INFO @ Fri, 10 Dec 2021 08:51:36: 5000000 INFO @ Fri, 10 Dec 2021 08:51:37: 15000000 INFO @ Fri, 10 Dec 2021 08:51:40: 9000000 INFO @ Fri, 10 Dec 2021 08:51:43: 6000000 INFO @ Fri, 10 Dec 2021 08:51:44: 16000000 INFO @ Fri, 10 Dec 2021 08:51:48: 10000000 INFO @ Fri, 10 Dec 2021 08:51:50: 7000000 INFO @ Fri, 10 Dec 2021 08:51:51: 17000000 INFO @ Fri, 10 Dec 2021 08:51:55: 11000000 INFO @ Fri, 10 Dec 2021 08:51:57: 8000000 INFO @ Fri, 10 Dec 2021 08:51:58: 18000000 INFO @ Fri, 10 Dec 2021 08:52:03: 12000000 INFO @ Fri, 10 Dec 2021 08:52:04: 9000000 INFO @ Fri, 10 Dec 2021 08:52:06: 19000000 INFO @ Fri, 10 Dec 2021 08:52:10: 13000000 INFO @ Fri, 10 Dec 2021 08:52:11: 10000000 INFO @ Fri, 10 Dec 2021 08:52:13: 20000000 INFO @ Fri, 10 Dec 2021 08:52:18: 14000000 INFO @ Fri, 10 Dec 2021 08:52:18: 11000000 INFO @ Fri, 10 Dec 2021 08:52:20: 21000000 INFO @ Fri, 10 Dec 2021 08:52:25: 12000000 INFO @ Fri, 10 Dec 2021 08:52:25: 15000000 INFO @ Fri, 10 Dec 2021 08:52:27: 22000000 INFO @ Fri, 10 Dec 2021 08:52:32: 13000000 INFO @ Fri, 10 Dec 2021 08:52:33: 16000000 INFO @ Fri, 10 Dec 2021 08:52:34: 23000000 INFO @ Fri, 10 Dec 2021 08:52:40: 14000000 INFO @ Fri, 10 Dec 2021 08:52:41: 17000000 INFO @ Fri, 10 Dec 2021 08:52:41: 24000000 INFO @ Fri, 10 Dec 2021 08:52:47: 15000000 INFO @ Fri, 10 Dec 2021 08:52:48: 25000000 INFO @ Fri, 10 Dec 2021 08:52:49: 18000000 INFO @ Fri, 10 Dec 2021 08:52:54: 16000000 INFO @ Fri, 10 Dec 2021 08:52:55: 26000000 INFO @ Fri, 10 Dec 2021 08:52:56: 19000000 INFO @ Fri, 10 Dec 2021 08:53:01: 17000000 INFO @ Fri, 10 Dec 2021 08:53:02: 27000000 INFO @ Fri, 10 Dec 2021 08:53:04: 20000000 INFO @ Fri, 10 Dec 2021 08:53:08: 18000000 INFO @ Fri, 10 Dec 2021 08:53:09: 28000000 INFO @ Fri, 10 Dec 2021 08:53:12: 21000000 INFO @ Fri, 10 Dec 2021 08:53:15: 19000000 INFO @ Fri, 10 Dec 2021 08:53:17: 29000000 INFO @ Fri, 10 Dec 2021 08:53:19: 22000000 INFO @ Fri, 10 Dec 2021 08:53:22: 20000000 INFO @ Fri, 10 Dec 2021 08:53:24: 30000000 INFO @ Fri, 10 Dec 2021 08:53:26: 23000000 INFO @ Fri, 10 Dec 2021 08:53:29: 21000000 INFO @ Fri, 10 Dec 2021 08:53:31: 31000000 INFO @ Fri, 10 Dec 2021 08:53:34: 24000000 INFO @ Fri, 10 Dec 2021 08:53:36: 22000000 INFO @ Fri, 10 Dec 2021 08:53:38: 32000000 INFO @ Fri, 10 Dec 2021 08:53:41: 25000000 INFO @ Fri, 10 Dec 2021 08:53:43: 23000000 INFO @ Fri, 10 Dec 2021 08:53:45: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 08:53:49: 26000000 INFO @ Fri, 10 Dec 2021 08:53:50: 24000000 INFO @ Fri, 10 Dec 2021 08:53:52: 34000000 INFO @ Fri, 10 Dec 2021 08:53:57: 27000000 INFO @ Fri, 10 Dec 2021 08:53:57: 25000000 INFO @ Fri, 10 Dec 2021 08:53:59: 35000000 INFO @ Fri, 10 Dec 2021 08:54:04: 26000000 INFO @ Fri, 10 Dec 2021 08:54:04: 28000000 INFO @ Fri, 10 Dec 2021 08:54:06: 36000000 INFO @ Fri, 10 Dec 2021 08:54:11: 27000000 INFO @ Fri, 10 Dec 2021 08:54:12: 29000000 INFO @ Fri, 10 Dec 2021 08:54:14: 37000000 INFO @ Fri, 10 Dec 2021 08:54:19: 28000000 INFO @ Fri, 10 Dec 2021 08:54:20: 30000000 INFO @ Fri, 10 Dec 2021 08:54:21: 38000000 INFO @ Fri, 10 Dec 2021 08:54:26: 29000000 INFO @ Fri, 10 Dec 2021 08:54:28: 31000000 INFO @ Fri, 10 Dec 2021 08:54:28: 39000000 INFO @ Fri, 10 Dec 2021 08:54:33: 30000000 INFO @ Fri, 10 Dec 2021 08:54:35: 40000000 INFO @ Fri, 10 Dec 2021 08:54:35: 32000000 INFO @ Fri, 10 Dec 2021 08:54:40: 31000000 INFO @ Fri, 10 Dec 2021 08:54:42: 41000000 INFO @ Fri, 10 Dec 2021 08:54:43: 33000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 08:54:47: 32000000 INFO @ Fri, 10 Dec 2021 08:54:49: 42000000 INFO @ Fri, 10 Dec 2021 08:54:51: 34000000 INFO @ Fri, 10 Dec 2021 08:54:54: 33000000 INFO @ Fri, 10 Dec 2021 08:54:56: 43000000 INFO @ Fri, 10 Dec 2021 08:54:59: 35000000 INFO @ Fri, 10 Dec 2021 08:55:01: 34000000 INFO @ Fri, 10 Dec 2021 08:55:03: 44000000 INFO @ Fri, 10 Dec 2021 08:55:07: 36000000 INFO @ Fri, 10 Dec 2021 08:55:08: 35000000 INFO @ Fri, 10 Dec 2021 08:55:10: 45000000 INFO @ Fri, 10 Dec 2021 08:55:13: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 08:55:13: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 08:55:13: #1 total tags in treatment: 18965659 INFO @ Fri, 10 Dec 2021 08:55:13: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 08:55:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 08:55:13: #1 tags after filtering in treatment: 13492653 INFO @ Fri, 10 Dec 2021 08:55:13: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 08:55:13: #1 finished! INFO @ Fri, 10 Dec 2021 08:55:13: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 08:55:13: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 08:55:14: #2 number of paired peaks: 976 WARNING @ Fri, 10 Dec 2021 08:55:14: Fewer paired peaks (976) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 976 pairs to build model! INFO @ Fri, 10 Dec 2021 08:55:14: start model_add_line... INFO @ Fri, 10 Dec 2021 08:55:14: start X-correlation... INFO @ Fri, 10 Dec 2021 08:55:14: end of X-cor INFO @ Fri, 10 Dec 2021 08:55:14: #2 finished! INFO @ Fri, 10 Dec 2021 08:55:14: #2 predicted fragment length is 56 bps INFO @ Fri, 10 Dec 2021 08:55:14: #2 alternative fragment length(s) may be 56 bps INFO @ Fri, 10 Dec 2021 08:55:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.05_model.r WARNING @ Fri, 10 Dec 2021 08:55:14: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 08:55:14: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Fri, 10 Dec 2021 08:55:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 08:55:14: #3 Call peaks... INFO @ Fri, 10 Dec 2021 08:55:14: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 08:55:15: 37000000 INFO @ Fri, 10 Dec 2021 08:55:15: 36000000 INFO @ Fri, 10 Dec 2021 08:55:22: 37000000 INFO @ Fri, 10 Dec 2021 08:55:22: 38000000 INFO @ Fri, 10 Dec 2021 08:55:29: 38000000 INFO @ Fri, 10 Dec 2021 08:55:30: 39000000 INFO @ Fri, 10 Dec 2021 08:55:36: 39000000 INFO @ Fri, 10 Dec 2021 08:55:38: 40000000 INFO @ Fri, 10 Dec 2021 08:55:39: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 08:55:43: 40000000 INFO @ Fri, 10 Dec 2021 08:55:46: 41000000 INFO @ Fri, 10 Dec 2021 08:55:50: 41000000 INFO @ Fri, 10 Dec 2021 08:55:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.05_peaks.xls INFO @ Fri, 10 Dec 2021 08:55:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 08:55:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.05_summits.bed INFO @ Fri, 10 Dec 2021 08:55:52: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (15603 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 08:55:53: 42000000 INFO @ Fri, 10 Dec 2021 08:55:57: 42000000 INFO @ Fri, 10 Dec 2021 08:56:01: 43000000 INFO @ Fri, 10 Dec 2021 08:56:04: 43000000 INFO @ Fri, 10 Dec 2021 08:56:09: 44000000 INFO @ Fri, 10 Dec 2021 08:56:11: 44000000 INFO @ Fri, 10 Dec 2021 08:56:17: 45000000 INFO @ Fri, 10 Dec 2021 08:56:18: 45000000 INFO @ Fri, 10 Dec 2021 08:56:19: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 08:56:19: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 08:56:19: #1 total tags in treatment: 18965659 INFO @ Fri, 10 Dec 2021 08:56:19: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 08:56:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 08:56:20: #1 tags after filtering in treatment: 13492653 INFO @ Fri, 10 Dec 2021 08:56:20: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 08:56:20: #1 finished! INFO @ Fri, 10 Dec 2021 08:56:20: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 08:56:20: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 08:56:20: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 08:56:20: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 08:56:20: #1 total tags in treatment: 18965659 INFO @ Fri, 10 Dec 2021 08:56:20: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 08:56:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 08:56:21: #2 number of paired peaks: 976 WARNING @ Fri, 10 Dec 2021 08:56:21: Fewer paired peaks (976) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 976 pairs to build model! INFO @ Fri, 10 Dec 2021 08:56:21: start model_add_line... INFO @ Fri, 10 Dec 2021 08:56:21: start X-correlation... INFO @ Fri, 10 Dec 2021 08:56:21: end of X-cor INFO @ Fri, 10 Dec 2021 08:56:21: #2 finished! INFO @ Fri, 10 Dec 2021 08:56:21: #2 predicted fragment length is 56 bps INFO @ Fri, 10 Dec 2021 08:56:21: #2 alternative fragment length(s) may be 56 bps INFO @ Fri, 10 Dec 2021 08:56:21: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.10_model.r WARNING @ Fri, 10 Dec 2021 08:56:21: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 08:56:21: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Fri, 10 Dec 2021 08:56:21: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 08:56:21: #3 Call peaks... INFO @ Fri, 10 Dec 2021 08:56:21: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 08:56:21: #1 tags after filtering in treatment: 13492653 INFO @ Fri, 10 Dec 2021 08:56:21: #1 Redundant rate of treatment: 0.29 INFO @ Fri, 10 Dec 2021 08:56:21: #1 finished! INFO @ Fri, 10 Dec 2021 08:56:21: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 08:56:21: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 08:56:22: #2 number of paired peaks: 976 WARNING @ Fri, 10 Dec 2021 08:56:22: Fewer paired peaks (976) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 976 pairs to build model! INFO @ Fri, 10 Dec 2021 08:56:22: start model_add_line... INFO @ Fri, 10 Dec 2021 08:56:22: start X-correlation... INFO @ Fri, 10 Dec 2021 08:56:22: end of X-cor INFO @ Fri, 10 Dec 2021 08:56:22: #2 finished! INFO @ Fri, 10 Dec 2021 08:56:22: #2 predicted fragment length is 56 bps INFO @ Fri, 10 Dec 2021 08:56:22: #2 alternative fragment length(s) may be 56 bps INFO @ Fri, 10 Dec 2021 08:56:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.20_model.r WARNING @ Fri, 10 Dec 2021 08:56:22: #2 Since the d (56) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 08:56:22: #2 You may need to consider one of the other alternative d(s): 56 WARNING @ Fri, 10 Dec 2021 08:56:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 08:56:22: #3 Call peaks... INFO @ Fri, 10 Dec 2021 08:56:22: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 08:56:45: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 08:56:45: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 08:56:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.20_peaks.xls INFO @ Fri, 10 Dec 2021 08:56:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 08:56:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.20_summits.bed INFO @ Fri, 10 Dec 2021 08:56:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.10_peaks.xls INFO @ Fri, 10 Dec 2021 08:56:58: Done! INFO @ Fri, 10 Dec 2021 08:56:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 08:56:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8755941/SRX8755941.10_summits.bed INFO @ Fri, 10 Dec 2021 08:56:58: Done! pass1 - making usageList (11 chroms): 0 millis pass2 - checking and writing primary data (1166 records, 4 fields): 3 millis CompletedMACS2peakCalling pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (7597 records, 4 fields): 8 millis CompletedMACS2peakCalling