Job ID = 14172455 SRX = SRX8694701 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 38096822 spots for SRR12180107/SRR12180107.sra Written 38096822 spots for SRR12180107/SRR12180107.sra fastq に変換しました。 bowtie でマッピング中... Your job 14173374 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:09:46 38096822 reads; of these: 38096822 (100.00%) were paired; of these: 15100256 (39.64%) aligned concordantly 0 times 14861816 (39.01%) aligned concordantly exactly 1 time 8134750 (21.35%) aligned concordantly >1 times ---- 15100256 pairs aligned concordantly 0 times; of these: 2930023 (19.40%) aligned discordantly 1 time ---- 12170233 pairs aligned 0 times concordantly or discordantly; of these: 24340466 mates make up the pairs; of these: 17749927 (72.92%) aligned 0 times 1901825 (7.81%) aligned exactly 1 time 4688714 (19.26%) aligned >1 times 76.70% overall alignment rate Time searching: 02:09:46 Overall time: 02:09:46 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 44 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3884764 / 25707988 = 0.1511 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 18:04:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 18:04:27: #1 read tag files... INFO @ Sat, 11 Dec 2021 18:04:27: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 18:04:35: 1000000 INFO @ Sat, 11 Dec 2021 18:04:42: 2000000 INFO @ Sat, 11 Dec 2021 18:04:50: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 18:04:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 18:04:57: #1 read tag files... INFO @ Sat, 11 Dec 2021 18:04:57: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 18:04:58: 4000000 INFO @ Sat, 11 Dec 2021 18:05:06: 1000000 INFO @ Sat, 11 Dec 2021 18:05:06: 5000000 INFO @ Sat, 11 Dec 2021 18:05:14: 2000000 INFO @ Sat, 11 Dec 2021 18:05:15: 6000000 INFO @ Sat, 11 Dec 2021 18:05:23: 3000000 INFO @ Sat, 11 Dec 2021 18:05:23: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 18:05:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 18:05:27: #1 read tag files... INFO @ Sat, 11 Dec 2021 18:05:27: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 18:05:32: 4000000 INFO @ Sat, 11 Dec 2021 18:05:33: 8000000 INFO @ Sat, 11 Dec 2021 18:05:38: 1000000 INFO @ Sat, 11 Dec 2021 18:05:42: 5000000 INFO @ Sat, 11 Dec 2021 18:05:43: 9000000 INFO @ Sat, 11 Dec 2021 18:05:49: 2000000 INFO @ Sat, 11 Dec 2021 18:05:52: 6000000 INFO @ Sat, 11 Dec 2021 18:05:52: 10000000 INFO @ Sat, 11 Dec 2021 18:06:00: 3000000 INFO @ Sat, 11 Dec 2021 18:06:02: 7000000 INFO @ Sat, 11 Dec 2021 18:06:02: 11000000 INFO @ Sat, 11 Dec 2021 18:06:12: 4000000 INFO @ Sat, 11 Dec 2021 18:06:12: 8000000 INFO @ Sat, 11 Dec 2021 18:06:12: 12000000 INFO @ Sat, 11 Dec 2021 18:06:21: 9000000 INFO @ Sat, 11 Dec 2021 18:06:22: 13000000 INFO @ Sat, 11 Dec 2021 18:06:23: 5000000 INFO @ Sat, 11 Dec 2021 18:06:31: 10000000 INFO @ Sat, 11 Dec 2021 18:06:32: 14000000 INFO @ Sat, 11 Dec 2021 18:06:33: 6000000 INFO @ Sat, 11 Dec 2021 18:06:41: 11000000 INFO @ Sat, 11 Dec 2021 18:06:41: 15000000 INFO @ Sat, 11 Dec 2021 18:06:44: 7000000 INFO @ Sat, 11 Dec 2021 18:06:51: 12000000 INFO @ Sat, 11 Dec 2021 18:06:51: 16000000 INFO @ Sat, 11 Dec 2021 18:06:55: 8000000 INFO @ Sat, 11 Dec 2021 18:07:00: 13000000 INFO @ Sat, 11 Dec 2021 18:07:01: 17000000 INFO @ Sat, 11 Dec 2021 18:07:06: 9000000 INFO @ Sat, 11 Dec 2021 18:07:10: 14000000 INFO @ Sat, 11 Dec 2021 18:07:11: 18000000 INFO @ Sat, 11 Dec 2021 18:07:17: 10000000 INFO @ Sat, 11 Dec 2021 18:07:20: 15000000 INFO @ Sat, 11 Dec 2021 18:07:20: 19000000 INFO @ Sat, 11 Dec 2021 18:07:28: 11000000 INFO @ Sat, 11 Dec 2021 18:07:29: 16000000 INFO @ Sat, 11 Dec 2021 18:07:30: 20000000 INFO @ Sat, 11 Dec 2021 18:07:39: 12000000 INFO @ Sat, 11 Dec 2021 18:07:39: 17000000 INFO @ Sat, 11 Dec 2021 18:07:40: 21000000 INFO @ Sat, 11 Dec 2021 18:07:49: 18000000 INFO @ Sat, 11 Dec 2021 18:07:50: 22000000 INFO @ Sat, 11 Dec 2021 18:07:50: 13000000 INFO @ Sat, 11 Dec 2021 18:07:59: 19000000 INFO @ Sat, 11 Dec 2021 18:07:59: 23000000 INFO @ Sat, 11 Dec 2021 18:08:01: 14000000 INFO @ Sat, 11 Dec 2021 18:08:09: 20000000 INFO @ Sat, 11 Dec 2021 18:08:09: 24000000 INFO @ Sat, 11 Dec 2021 18:08:12: 15000000 INFO @ Sat, 11 Dec 2021 18:08:18: 21000000 INFO @ Sat, 11 Dec 2021 18:08:19: 25000000 INFO @ Sat, 11 Dec 2021 18:08:22: 16000000 INFO @ Sat, 11 Dec 2021 18:08:28: 22000000 INFO @ Sat, 11 Dec 2021 18:08:28: 26000000 INFO @ Sat, 11 Dec 2021 18:08:33: 17000000 INFO @ Sat, 11 Dec 2021 18:08:38: 23000000 INFO @ Sat, 11 Dec 2021 18:08:38: 27000000 INFO @ Sat, 11 Dec 2021 18:08:44: 18000000 INFO @ Sat, 11 Dec 2021 18:08:47: 24000000 INFO @ Sat, 11 Dec 2021 18:08:47: 28000000 INFO @ Sat, 11 Dec 2021 18:08:55: 19000000 INFO @ Sat, 11 Dec 2021 18:08:56: 25000000 INFO @ Sat, 11 Dec 2021 18:08:57: 29000000 INFO @ Sat, 11 Dec 2021 18:09:06: 20000000 INFO @ Sat, 11 Dec 2021 18:09:06: 26000000 INFO @ Sat, 11 Dec 2021 18:09:06: 30000000 INFO @ Sat, 11 Dec 2021 18:09:16: 27000000 INFO @ Sat, 11 Dec 2021 18:09:16: 31000000 INFO @ Sat, 11 Dec 2021 18:09:17: 21000000 INFO @ Sat, 11 Dec 2021 18:09:25: 28000000 INFO @ Sat, 11 Dec 2021 18:09:25: 32000000 INFO @ Sat, 11 Dec 2021 18:09:27: 22000000 INFO @ Sat, 11 Dec 2021 18:09:34: 29000000 INFO @ Sat, 11 Dec 2021 18:09:35: 33000000 INFO @ Sat, 11 Dec 2021 18:09:38: 23000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 18:09:44: 30000000 INFO @ Sat, 11 Dec 2021 18:09:45: 34000000 INFO @ Sat, 11 Dec 2021 18:09:49: 24000000 INFO @ Sat, 11 Dec 2021 18:09:54: 31000000 INFO @ Sat, 11 Dec 2021 18:09:54: 35000000 INFO @ Sat, 11 Dec 2021 18:09:59: 25000000 INFO @ Sat, 11 Dec 2021 18:10:03: 32000000 INFO @ Sat, 11 Dec 2021 18:10:04: 36000000 INFO @ Sat, 11 Dec 2021 18:10:10: 26000000 INFO @ Sat, 11 Dec 2021 18:10:13: 33000000 INFO @ Sat, 11 Dec 2021 18:10:14: 37000000 INFO @ Sat, 11 Dec 2021 18:10:21: 27000000 INFO @ Sat, 11 Dec 2021 18:10:22: 34000000 INFO @ Sat, 11 Dec 2021 18:10:23: 38000000 INFO @ Sat, 11 Dec 2021 18:10:31: 28000000 INFO @ Sat, 11 Dec 2021 18:10:32: 35000000 INFO @ Sat, 11 Dec 2021 18:10:33: 39000000 INFO @ Sat, 11 Dec 2021 18:10:41: 36000000 INFO @ Sat, 11 Dec 2021 18:10:42: 29000000 INFO @ Sat, 11 Dec 2021 18:10:42: 40000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 18:10:51: 37000000 INFO @ Sat, 11 Dec 2021 18:10:52: 41000000 INFO @ Sat, 11 Dec 2021 18:10:52: 30000000 INFO @ Sat, 11 Dec 2021 18:11:01: 38000000 INFO @ Sat, 11 Dec 2021 18:11:02: 42000000 INFO @ Sat, 11 Dec 2021 18:11:03: 31000000 INFO @ Sat, 11 Dec 2021 18:11:10: 39000000 INFO @ Sat, 11 Dec 2021 18:11:11: 43000000 INFO @ Sat, 11 Dec 2021 18:11:13: 32000000 INFO @ Sat, 11 Dec 2021 18:11:20: 40000000 INFO @ Sat, 11 Dec 2021 18:11:21: 44000000 INFO @ Sat, 11 Dec 2021 18:11:23: 33000000 INFO @ Sat, 11 Dec 2021 18:11:30: 41000000 INFO @ Sat, 11 Dec 2021 18:11:31: 45000000 INFO @ Sat, 11 Dec 2021 18:11:34: 34000000 INFO @ Sat, 11 Dec 2021 18:11:39: 42000000 INFO @ Sat, 11 Dec 2021 18:11:40: 46000000 INFO @ Sat, 11 Dec 2021 18:11:44: 35000000 INFO @ Sat, 11 Dec 2021 18:11:48: 43000000 INFO @ Sat, 11 Dec 2021 18:11:50: 47000000 INFO @ Sat, 11 Dec 2021 18:11:54: 36000000 INFO @ Sat, 11 Dec 2021 18:11:58: 44000000 INFO @ Sat, 11 Dec 2021 18:11:59: 48000000 INFO @ Sat, 11 Dec 2021 18:12:05: 37000000 INFO @ Sat, 11 Dec 2021 18:12:07: 45000000 INFO @ Sat, 11 Dec 2021 18:12:09: 49000000 INFO @ Sat, 11 Dec 2021 18:12:15: 38000000 INFO @ Sat, 11 Dec 2021 18:12:17: 46000000 INFO @ Sat, 11 Dec 2021 18:12:18: 50000000 INFO @ Sat, 11 Dec 2021 18:12:25: #1 tag size is determined as 151 bps INFO @ Sat, 11 Dec 2021 18:12:25: #1 tag size = 151 INFO @ Sat, 11 Dec 2021 18:12:25: #1 total tags in treatment: 19551659 INFO @ Sat, 11 Dec 2021 18:12:25: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 18:12:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 18:12:25: #1 tags after filtering in treatment: 16261340 INFO @ Sat, 11 Dec 2021 18:12:25: #1 Redundant rate of treatment: 0.17 INFO @ Sat, 11 Dec 2021 18:12:25: #1 finished! INFO @ Sat, 11 Dec 2021 18:12:25: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 18:12:25: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 18:12:26: 39000000 INFO @ Sat, 11 Dec 2021 18:12:26: 47000000 INFO @ Sat, 11 Dec 2021 18:12:26: #2 number of paired peaks: 1724 INFO @ Sat, 11 Dec 2021 18:12:26: start model_add_line... INFO @ Sat, 11 Dec 2021 18:12:27: start X-correlation... INFO @ Sat, 11 Dec 2021 18:12:27: end of X-cor INFO @ Sat, 11 Dec 2021 18:12:27: #2 finished! INFO @ Sat, 11 Dec 2021 18:12:27: #2 predicted fragment length is 236 bps INFO @ Sat, 11 Dec 2021 18:12:27: #2 alternative fragment length(s) may be 236 bps INFO @ Sat, 11 Dec 2021 18:12:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.05_model.r WARNING @ Sat, 11 Dec 2021 18:12:27: #2 Since the d (236) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 18:12:27: #2 You may need to consider one of the other alternative d(s): 236 WARNING @ Sat, 11 Dec 2021 18:12:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 18:12:27: #3 Call peaks... INFO @ Sat, 11 Dec 2021 18:12:27: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 18:12:36: 48000000 INFO @ Sat, 11 Dec 2021 18:12:36: 40000000 INFO @ Sat, 11 Dec 2021 18:12:45: 49000000 INFO @ Sat, 11 Dec 2021 18:12:46: 41000000 INFO @ Sat, 11 Dec 2021 18:12:54: 50000000 INFO @ Sat, 11 Dec 2021 18:12:56: 42000000 INFO @ Sat, 11 Dec 2021 18:13:00: #1 tag size is determined as 151 bps INFO @ Sat, 11 Dec 2021 18:13:00: #1 tag size = 151 INFO @ Sat, 11 Dec 2021 18:13:00: #1 total tags in treatment: 19551659 INFO @ Sat, 11 Dec 2021 18:13:00: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 18:13:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 18:13:01: #1 tags after filtering in treatment: 16261340 INFO @ Sat, 11 Dec 2021 18:13:01: #1 Redundant rate of treatment: 0.17 INFO @ Sat, 11 Dec 2021 18:13:01: #1 finished! INFO @ Sat, 11 Dec 2021 18:13:01: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 18:13:01: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 18:13:02: #2 number of paired peaks: 1724 INFO @ Sat, 11 Dec 2021 18:13:02: start model_add_line... INFO @ Sat, 11 Dec 2021 18:13:02: start X-correlation... INFO @ Sat, 11 Dec 2021 18:13:02: end of X-cor INFO @ Sat, 11 Dec 2021 18:13:02: #2 finished! INFO @ Sat, 11 Dec 2021 18:13:02: #2 predicted fragment length is 236 bps INFO @ Sat, 11 Dec 2021 18:13:02: #2 alternative fragment length(s) may be 236 bps INFO @ Sat, 11 Dec 2021 18:13:02: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.10_model.r WARNING @ Sat, 11 Dec 2021 18:13:02: #2 Since the d (236) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 18:13:02: #2 You may need to consider one of the other alternative d(s): 236 WARNING @ Sat, 11 Dec 2021 18:13:02: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 18:13:02: #3 Call peaks... INFO @ Sat, 11 Dec 2021 18:13:02: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 18:13:05: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 18:13:06: 43000000 INFO @ Sat, 11 Dec 2021 18:13:16: 44000000 INFO @ Sat, 11 Dec 2021 18:13:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.05_peaks.xls INFO @ Sat, 11 Dec 2021 18:13:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 18:13:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.05_summits.bed INFO @ Sat, 11 Dec 2021 18:13:22: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (9844 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 18:13:25: 45000000 INFO @ Sat, 11 Dec 2021 18:13:35: 46000000 INFO @ Sat, 11 Dec 2021 18:13:40: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 18:13:44: 47000000 INFO @ Sat, 11 Dec 2021 18:13:54: 48000000 INFO @ Sat, 11 Dec 2021 18:13:56: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.10_peaks.xls INFO @ Sat, 11 Dec 2021 18:13:56: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 18:13:56: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.10_summits.bed INFO @ Sat, 11 Dec 2021 18:13:56: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (6028 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 18:14:03: 49000000 INFO @ Sat, 11 Dec 2021 18:14:12: 50000000 INFO @ Sat, 11 Dec 2021 18:14:19: #1 tag size is determined as 151 bps INFO @ Sat, 11 Dec 2021 18:14:19: #1 tag size = 151 INFO @ Sat, 11 Dec 2021 18:14:19: #1 total tags in treatment: 19551659 INFO @ Sat, 11 Dec 2021 18:14:19: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 18:14:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 18:14:19: #1 tags after filtering in treatment: 16261340 INFO @ Sat, 11 Dec 2021 18:14:19: #1 Redundant rate of treatment: 0.17 INFO @ Sat, 11 Dec 2021 18:14:19: #1 finished! INFO @ Sat, 11 Dec 2021 18:14:19: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 18:14:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 18:14:20: #2 number of paired peaks: 1724 INFO @ Sat, 11 Dec 2021 18:14:20: start model_add_line... INFO @ Sat, 11 Dec 2021 18:14:20: start X-correlation... INFO @ Sat, 11 Dec 2021 18:14:20: end of X-cor INFO @ Sat, 11 Dec 2021 18:14:20: #2 finished! INFO @ Sat, 11 Dec 2021 18:14:20: #2 predicted fragment length is 236 bps INFO @ Sat, 11 Dec 2021 18:14:20: #2 alternative fragment length(s) may be 236 bps INFO @ Sat, 11 Dec 2021 18:14:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.20_model.r WARNING @ Sat, 11 Dec 2021 18:14:20: #2 Since the d (236) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 18:14:20: #2 You may need to consider one of the other alternative d(s): 236 WARNING @ Sat, 11 Dec 2021 18:14:20: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 18:14:20: #3 Call peaks... INFO @ Sat, 11 Dec 2021 18:14:20: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 18:14:58: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 18:15:14: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.20_peaks.xls INFO @ Sat, 11 Dec 2021 18:15:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 18:15:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694701/SRX8694701.20_summits.bed INFO @ Sat, 11 Dec 2021 18:15:14: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3118 records, 4 fields): 5 millis CompletedMACS2peakCalling