Job ID = 14167039 SRX = SRX8694696 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 51030788 spots for SRR12180112/SRR12180112.sra Written 51030788 spots for SRR12180112/SRR12180112.sra fastq に変換しました。 bowtie でマッピング中... Your job 14168074 ("srTdm6") has been submitted Time loading reference: 00:00:01 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:11:32 51030788 reads; of these: 51030788 (100.00%) were paired; of these: 17770800 (34.82%) aligned concordantly 0 times 23500606 (46.05%) aligned concordantly exactly 1 time 9759382 (19.12%) aligned concordantly >1 times ---- 17770800 pairs aligned concordantly 0 times; of these: 5354893 (30.13%) aligned discordantly 1 time ---- 12415907 pairs aligned 0 times concordantly or discordantly; of these: 24831814 mates make up the pairs; of these: 14277508 (57.50%) aligned 0 times 4636632 (18.67%) aligned exactly 1 time 5917674 (23.83%) aligned >1 times 86.01% overall alignment rate Time searching: 03:11:33 Overall time: 03:11:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4560864 / 37026402 = 0.1232 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:04:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:04:49: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:04:49: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:04:56: 1000000 INFO @ Fri, 10 Dec 2021 13:05:04: 2000000 INFO @ Fri, 10 Dec 2021 13:05:11: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:05:18: 4000000 INFO @ Fri, 10 Dec 2021 13:05:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:05:19: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:05:19: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:05:26: 5000000 INFO @ Fri, 10 Dec 2021 13:05:27: 1000000 INFO @ Fri, 10 Dec 2021 13:05:33: 6000000 INFO @ Fri, 10 Dec 2021 13:05:34: 2000000 INFO @ Fri, 10 Dec 2021 13:05:41: 7000000 INFO @ Fri, 10 Dec 2021 13:05:42: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 13:05:48: 8000000 INFO @ Fri, 10 Dec 2021 13:05:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 13:05:49: #1 read tag files... INFO @ Fri, 10 Dec 2021 13:05:49: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 13:05:50: 4000000 INFO @ Fri, 10 Dec 2021 13:05:56: 9000000 INFO @ Fri, 10 Dec 2021 13:05:57: 1000000 INFO @ Fri, 10 Dec 2021 13:05:58: 5000000 INFO @ Fri, 10 Dec 2021 13:06:04: 10000000 INFO @ Fri, 10 Dec 2021 13:06:05: 2000000 INFO @ Fri, 10 Dec 2021 13:06:06: 6000000 INFO @ Fri, 10 Dec 2021 13:06:11: 11000000 INFO @ Fri, 10 Dec 2021 13:06:12: 3000000 INFO @ Fri, 10 Dec 2021 13:06:13: 7000000 INFO @ Fri, 10 Dec 2021 13:06:19: 12000000 INFO @ Fri, 10 Dec 2021 13:06:20: 4000000 INFO @ Fri, 10 Dec 2021 13:06:21: 8000000 INFO @ Fri, 10 Dec 2021 13:06:27: 13000000 INFO @ Fri, 10 Dec 2021 13:06:28: 5000000 INFO @ Fri, 10 Dec 2021 13:06:29: 9000000 INFO @ Fri, 10 Dec 2021 13:06:34: 14000000 INFO @ Fri, 10 Dec 2021 13:06:35: 6000000 INFO @ Fri, 10 Dec 2021 13:06:37: 10000000 INFO @ Fri, 10 Dec 2021 13:06:42: 15000000 INFO @ Fri, 10 Dec 2021 13:06:43: 7000000 INFO @ Fri, 10 Dec 2021 13:06:44: 11000000 INFO @ Fri, 10 Dec 2021 13:06:49: 16000000 INFO @ Fri, 10 Dec 2021 13:06:51: 8000000 INFO @ Fri, 10 Dec 2021 13:06:52: 12000000 INFO @ Fri, 10 Dec 2021 13:06:57: 17000000 INFO @ Fri, 10 Dec 2021 13:06:59: 9000000 INFO @ Fri, 10 Dec 2021 13:07:00: 13000000 INFO @ Fri, 10 Dec 2021 13:07:05: 18000000 INFO @ Fri, 10 Dec 2021 13:07:07: 10000000 INFO @ Fri, 10 Dec 2021 13:07:08: 14000000 INFO @ Fri, 10 Dec 2021 13:07:12: 19000000 INFO @ Fri, 10 Dec 2021 13:07:14: 11000000 INFO @ Fri, 10 Dec 2021 13:07:15: 15000000 INFO @ Fri, 10 Dec 2021 13:07:20: 20000000 INFO @ Fri, 10 Dec 2021 13:07:22: 12000000 INFO @ Fri, 10 Dec 2021 13:07:23: 16000000 INFO @ Fri, 10 Dec 2021 13:07:28: 21000000 INFO @ Fri, 10 Dec 2021 13:07:30: 13000000 INFO @ Fri, 10 Dec 2021 13:07:31: 17000000 INFO @ Fri, 10 Dec 2021 13:07:36: 22000000 INFO @ Fri, 10 Dec 2021 13:07:38: 14000000 INFO @ Fri, 10 Dec 2021 13:07:39: 18000000 INFO @ Fri, 10 Dec 2021 13:07:43: 23000000 INFO @ Fri, 10 Dec 2021 13:07:46: 15000000 INFO @ Fri, 10 Dec 2021 13:07:47: 19000000 INFO @ Fri, 10 Dec 2021 13:07:51: 24000000 INFO @ Fri, 10 Dec 2021 13:07:54: 16000000 INFO @ Fri, 10 Dec 2021 13:07:55: 20000000 INFO @ Fri, 10 Dec 2021 13:07:59: 25000000 INFO @ Fri, 10 Dec 2021 13:08:01: 17000000 INFO @ Fri, 10 Dec 2021 13:08:02: 21000000 INFO @ Fri, 10 Dec 2021 13:08:06: 26000000 INFO @ Fri, 10 Dec 2021 13:08:09: 18000000 INFO @ Fri, 10 Dec 2021 13:08:10: 22000000 INFO @ Fri, 10 Dec 2021 13:08:14: 27000000 INFO @ Fri, 10 Dec 2021 13:08:17: 19000000 INFO @ Fri, 10 Dec 2021 13:08:18: 23000000 INFO @ Fri, 10 Dec 2021 13:08:21: 28000000 INFO @ Fri, 10 Dec 2021 13:08:25: 20000000 INFO @ Fri, 10 Dec 2021 13:08:26: 24000000 INFO @ Fri, 10 Dec 2021 13:08:29: 29000000 INFO @ Fri, 10 Dec 2021 13:08:33: 21000000 INFO @ Fri, 10 Dec 2021 13:08:34: 25000000 INFO @ Fri, 10 Dec 2021 13:08:37: 30000000 INFO @ Fri, 10 Dec 2021 13:08:41: 22000000 INFO @ Fri, 10 Dec 2021 13:08:41: 26000000 INFO @ Fri, 10 Dec 2021 13:08:44: 31000000 INFO @ Fri, 10 Dec 2021 13:08:48: 23000000 INFO @ Fri, 10 Dec 2021 13:08:49: 27000000 INFO @ Fri, 10 Dec 2021 13:08:52: 32000000 INFO @ Fri, 10 Dec 2021 13:08:56: 24000000 INFO @ Fri, 10 Dec 2021 13:08:57: 28000000 INFO @ Fri, 10 Dec 2021 13:09:00: 33000000 INFO @ Fri, 10 Dec 2021 13:09:04: 25000000 INFO @ Fri, 10 Dec 2021 13:09:05: 29000000 INFO @ Fri, 10 Dec 2021 13:09:08: 34000000 INFO @ Fri, 10 Dec 2021 13:09:12: 26000000 INFO @ Fri, 10 Dec 2021 13:09:12: 30000000 INFO @ Fri, 10 Dec 2021 13:09:15: 35000000 INFO @ Fri, 10 Dec 2021 13:09:19: 27000000 INFO @ Fri, 10 Dec 2021 13:09:20: 31000000 INFO @ Fri, 10 Dec 2021 13:09:23: 36000000 INFO @ Fri, 10 Dec 2021 13:09:27: 28000000 INFO @ Fri, 10 Dec 2021 13:09:28: 32000000 INFO @ Fri, 10 Dec 2021 13:09:31: 37000000 INFO @ Fri, 10 Dec 2021 13:09:35: 29000000 INFO @ Fri, 10 Dec 2021 13:09:36: 33000000 INFO @ Fri, 10 Dec 2021 13:09:38: 38000000 INFO @ Fri, 10 Dec 2021 13:09:43: 30000000 INFO @ Fri, 10 Dec 2021 13:09:44: 34000000 INFO @ Fri, 10 Dec 2021 13:09:46: 39000000 INFO @ Fri, 10 Dec 2021 13:09:51: 31000000 INFO @ Fri, 10 Dec 2021 13:09:52: 35000000 INFO @ Fri, 10 Dec 2021 13:09:53: 40000000 INFO @ Fri, 10 Dec 2021 13:09:59: 32000000 INFO @ Fri, 10 Dec 2021 13:09:59: 36000000 INFO @ Fri, 10 Dec 2021 13:10:01: 41000000 INFO @ Fri, 10 Dec 2021 13:10:06: 33000000 INFO @ Fri, 10 Dec 2021 13:10:07: 37000000 INFO @ Fri, 10 Dec 2021 13:10:09: 42000000 INFO @ Fri, 10 Dec 2021 13:10:14: 34000000 INFO @ Fri, 10 Dec 2021 13:10:15: 38000000 INFO @ Fri, 10 Dec 2021 13:10:16: 43000000 INFO @ Fri, 10 Dec 2021 13:10:22: 35000000 INFO @ Fri, 10 Dec 2021 13:10:23: 39000000 INFO @ Fri, 10 Dec 2021 13:10:24: 44000000 INFO @ Fri, 10 Dec 2021 13:10:30: 36000000 INFO @ Fri, 10 Dec 2021 13:10:30: 40000000 INFO @ Fri, 10 Dec 2021 13:10:32: 45000000 INFO @ Fri, 10 Dec 2021 13:10:38: 37000000 INFO @ Fri, 10 Dec 2021 13:10:38: 41000000 INFO @ Fri, 10 Dec 2021 13:10:39: 46000000 INFO @ Fri, 10 Dec 2021 13:10:45: 38000000 INFO @ Fri, 10 Dec 2021 13:10:46: 42000000 INFO @ Fri, 10 Dec 2021 13:10:47: 47000000 INFO @ Fri, 10 Dec 2021 13:10:53: 39000000 INFO @ Fri, 10 Dec 2021 13:10:53: 43000000 INFO @ Fri, 10 Dec 2021 13:10:54: 48000000 INFO @ Fri, 10 Dec 2021 13:11:01: 40000000 INFO @ Fri, 10 Dec 2021 13:11:01: 44000000 INFO @ Fri, 10 Dec 2021 13:11:01: 49000000 INFO @ Fri, 10 Dec 2021 13:11:08: 50000000 INFO @ Fri, 10 Dec 2021 13:11:09: 41000000 INFO @ Fri, 10 Dec 2021 13:11:09: 45000000 INFO @ Fri, 10 Dec 2021 13:11:16: 51000000 INFO @ Fri, 10 Dec 2021 13:11:16: 42000000 INFO @ Fri, 10 Dec 2021 13:11:17: 46000000 INFO @ Fri, 10 Dec 2021 13:11:23: 52000000 INFO @ Fri, 10 Dec 2021 13:11:24: 43000000 INFO @ Fri, 10 Dec 2021 13:11:24: 47000000 INFO @ Fri, 10 Dec 2021 13:11:30: 53000000 INFO @ Fri, 10 Dec 2021 13:11:32: 48000000 INFO @ Fri, 10 Dec 2021 13:11:32: 44000000 INFO @ Fri, 10 Dec 2021 13:11:37: 54000000 INFO @ Fri, 10 Dec 2021 13:11:39: 49000000 INFO @ Fri, 10 Dec 2021 13:11:40: 45000000 INFO @ Fri, 10 Dec 2021 13:11:45: 55000000 INFO @ Fri, 10 Dec 2021 13:11:46: 50000000 INFO @ Fri, 10 Dec 2021 13:11:48: 46000000 INFO @ Fri, 10 Dec 2021 13:11:52: 56000000 INFO @ Fri, 10 Dec 2021 13:11:54: 51000000 INFO @ Fri, 10 Dec 2021 13:11:55: 47000000 INFO @ Fri, 10 Dec 2021 13:11:59: 57000000 INFO @ Fri, 10 Dec 2021 13:12:01: 52000000 INFO @ Fri, 10 Dec 2021 13:12:03: 48000000 INFO @ Fri, 10 Dec 2021 13:12:06: 58000000 INFO @ Fri, 10 Dec 2021 13:12:08: 53000000 INFO @ Fri, 10 Dec 2021 13:12:10: 49000000 INFO @ Fri, 10 Dec 2021 13:12:13: 59000000 INFO @ Fri, 10 Dec 2021 13:12:16: 54000000 INFO @ Fri, 10 Dec 2021 13:12:17: 50000000 INFO @ Fri, 10 Dec 2021 13:12:20: 60000000 INFO @ Fri, 10 Dec 2021 13:12:23: 55000000 INFO @ Fri, 10 Dec 2021 13:12:25: 51000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 13:12:28: 61000000 INFO @ Fri, 10 Dec 2021 13:12:30: 56000000 INFO @ Fri, 10 Dec 2021 13:12:32: 52000000 INFO @ Fri, 10 Dec 2021 13:12:35: 62000000 INFO @ Fri, 10 Dec 2021 13:12:37: 57000000 INFO @ Fri, 10 Dec 2021 13:12:39: 53000000 INFO @ Fri, 10 Dec 2021 13:12:42: 63000000 INFO @ Fri, 10 Dec 2021 13:12:44: 58000000 INFO @ Fri, 10 Dec 2021 13:12:46: 54000000 INFO @ Fri, 10 Dec 2021 13:12:50: 64000000 INFO @ Fri, 10 Dec 2021 13:12:52: 59000000 INFO @ Fri, 10 Dec 2021 13:12:54: 55000000 INFO @ Fri, 10 Dec 2021 13:12:58: 65000000 INFO @ Fri, 10 Dec 2021 13:12:59: 60000000 INFO @ Fri, 10 Dec 2021 13:13:01: 56000000 INFO @ Fri, 10 Dec 2021 13:13:05: 66000000 INFO @ Fri, 10 Dec 2021 13:13:06: 61000000 INFO @ Fri, 10 Dec 2021 13:13:08: 57000000 INFO @ Fri, 10 Dec 2021 13:13:13: 67000000 INFO @ Fri, 10 Dec 2021 13:13:14: 62000000 INFO @ Fri, 10 Dec 2021 13:13:15: 58000000 INFO @ Fri, 10 Dec 2021 13:13:20: 68000000 INFO @ Fri, 10 Dec 2021 13:13:22: 63000000 INFO @ Fri, 10 Dec 2021 13:13:23: 59000000 INFO @ Fri, 10 Dec 2021 13:13:28: 69000000 INFO @ Fri, 10 Dec 2021 13:13:29: 64000000 INFO @ Fri, 10 Dec 2021 13:13:30: 60000000 INFO @ Fri, 10 Dec 2021 13:13:36: 70000000 INFO @ Fri, 10 Dec 2021 13:13:37: 65000000 INFO @ Fri, 10 Dec 2021 13:13:37: 61000000 INFO @ Fri, 10 Dec 2021 13:13:43: 71000000 INFO @ Fri, 10 Dec 2021 13:13:45: 62000000 INFO @ Fri, 10 Dec 2021 13:13:45: 66000000 INFO @ Fri, 10 Dec 2021 13:13:51: 72000000 INFO @ Fri, 10 Dec 2021 13:13:53: 67000000 INFO @ Fri, 10 Dec 2021 13:13:53: 63000000 INFO @ Fri, 10 Dec 2021 13:13:59: 73000000 INFO @ Fri, 10 Dec 2021 13:14:01: 68000000 INFO @ Fri, 10 Dec 2021 13:14:01: 64000000 INFO @ Fri, 10 Dec 2021 13:14:07: 74000000 INFO @ Fri, 10 Dec 2021 13:14:09: 69000000 INFO @ Fri, 10 Dec 2021 13:14:09: 65000000 BigWig に変換しました。 INFO @ Fri, 10 Dec 2021 13:14:14: 75000000 INFO @ Fri, 10 Dec 2021 13:14:16: 70000000 INFO @ Fri, 10 Dec 2021 13:14:17: 66000000 INFO @ Fri, 10 Dec 2021 13:14:22: 76000000 INFO @ Fri, 10 Dec 2021 13:14:24: 71000000 INFO @ Fri, 10 Dec 2021 13:14:24: 67000000 INFO @ Fri, 10 Dec 2021 13:14:30: 77000000 INFO @ Fri, 10 Dec 2021 13:14:32: 72000000 INFO @ Fri, 10 Dec 2021 13:14:32: 68000000 INFO @ Fri, 10 Dec 2021 13:14:38: 78000000 INFO @ Fri, 10 Dec 2021 13:14:40: 73000000 INFO @ Fri, 10 Dec 2021 13:14:40: 69000000 INFO @ Fri, 10 Dec 2021 13:14:43: #1 tag size is determined as 151 bps INFO @ Fri, 10 Dec 2021 13:14:43: #1 tag size = 151 INFO @ Fri, 10 Dec 2021 13:14:43: #1 total tags in treatment: 29097963 INFO @ Fri, 10 Dec 2021 13:14:43: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 13:14:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 13:14:44: #1 tags after filtering in treatment: 25668511 INFO @ Fri, 10 Dec 2021 13:14:44: #1 Redundant rate of treatment: 0.12 INFO @ Fri, 10 Dec 2021 13:14:44: #1 finished! INFO @ Fri, 10 Dec 2021 13:14:44: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 13:14:44: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 13:14:45: #2 number of paired peaks: 419 WARNING @ Fri, 10 Dec 2021 13:14:45: Fewer paired peaks (419) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 419 pairs to build model! INFO @ Fri, 10 Dec 2021 13:14:45: start model_add_line... INFO @ Fri, 10 Dec 2021 13:14:46: start X-correlation... INFO @ Fri, 10 Dec 2021 13:14:46: end of X-cor INFO @ Fri, 10 Dec 2021 13:14:46: #2 finished! INFO @ Fri, 10 Dec 2021 13:14:46: #2 predicted fragment length is 193 bps INFO @ Fri, 10 Dec 2021 13:14:46: #2 alternative fragment length(s) may be 193 bps INFO @ Fri, 10 Dec 2021 13:14:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.05_model.r WARNING @ Fri, 10 Dec 2021 13:14:46: #2 Since the d (193) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 13:14:46: #2 You may need to consider one of the other alternative d(s): 193 WARNING @ Fri, 10 Dec 2021 13:14:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 13:14:46: #3 Call peaks... INFO @ Fri, 10 Dec 2021 13:14:46: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 13:14:48: 70000000 INFO @ Fri, 10 Dec 2021 13:14:48: 74000000 INFO @ Fri, 10 Dec 2021 13:14:56: 75000000 INFO @ Fri, 10 Dec 2021 13:14:56: 71000000 INFO @ Fri, 10 Dec 2021 13:15:04: 76000000 INFO @ Fri, 10 Dec 2021 13:15:04: 72000000 INFO @ Fri, 10 Dec 2021 13:15:11: 77000000 INFO @ Fri, 10 Dec 2021 13:15:11: 73000000 INFO @ Fri, 10 Dec 2021 13:15:19: 78000000 INFO @ Fri, 10 Dec 2021 13:15:19: 74000000 INFO @ Fri, 10 Dec 2021 13:15:25: #1 tag size is determined as 151 bps INFO @ Fri, 10 Dec 2021 13:15:25: #1 tag size = 151 INFO @ Fri, 10 Dec 2021 13:15:25: #1 total tags in treatment: 29097963 INFO @ Fri, 10 Dec 2021 13:15:25: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 13:15:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 13:15:25: #1 tags after filtering in treatment: 25668511 INFO @ Fri, 10 Dec 2021 13:15:25: #1 Redundant rate of treatment: 0.12 INFO @ Fri, 10 Dec 2021 13:15:25: #1 finished! INFO @ Fri, 10 Dec 2021 13:15:25: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 13:15:25: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 13:15:27: #2 number of paired peaks: 419 WARNING @ Fri, 10 Dec 2021 13:15:27: Fewer paired peaks (419) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 419 pairs to build model! INFO @ Fri, 10 Dec 2021 13:15:27: start model_add_line... INFO @ Fri, 10 Dec 2021 13:15:27: start X-correlation... INFO @ Fri, 10 Dec 2021 13:15:27: end of X-cor INFO @ Fri, 10 Dec 2021 13:15:27: #2 finished! INFO @ Fri, 10 Dec 2021 13:15:27: #2 predicted fragment length is 193 bps INFO @ Fri, 10 Dec 2021 13:15:27: #2 alternative fragment length(s) may be 193 bps INFO @ Fri, 10 Dec 2021 13:15:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.10_model.r WARNING @ Fri, 10 Dec 2021 13:15:27: #2 Since the d (193) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 13:15:27: #2 You may need to consider one of the other alternative d(s): 193 WARNING @ Fri, 10 Dec 2021 13:15:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 13:15:27: #3 Call peaks... INFO @ Fri, 10 Dec 2021 13:15:27: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 13:15:27: 75000000 INFO @ Fri, 10 Dec 2021 13:15:35: 76000000 INFO @ Fri, 10 Dec 2021 13:15:35: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 13:15:43: 77000000 INFO @ Fri, 10 Dec 2021 13:15:50: 78000000 INFO @ Fri, 10 Dec 2021 13:15:55: #1 tag size is determined as 151 bps INFO @ Fri, 10 Dec 2021 13:15:55: #1 tag size = 151 INFO @ Fri, 10 Dec 2021 13:15:55: #1 total tags in treatment: 29097963 INFO @ Fri, 10 Dec 2021 13:15:55: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 13:15:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 13:15:56: #1 tags after filtering in treatment: 25668511 INFO @ Fri, 10 Dec 2021 13:15:56: #1 Redundant rate of treatment: 0.12 INFO @ Fri, 10 Dec 2021 13:15:56: #1 finished! INFO @ Fri, 10 Dec 2021 13:15:56: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 13:15:56: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 13:15:58: #2 number of paired peaks: 419 WARNING @ Fri, 10 Dec 2021 13:15:58: Fewer paired peaks (419) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 419 pairs to build model! INFO @ Fri, 10 Dec 2021 13:15:58: start model_add_line... INFO @ Fri, 10 Dec 2021 13:15:58: start X-correlation... INFO @ Fri, 10 Dec 2021 13:15:58: end of X-cor INFO @ Fri, 10 Dec 2021 13:15:58: #2 finished! INFO @ Fri, 10 Dec 2021 13:15:58: #2 predicted fragment length is 193 bps INFO @ Fri, 10 Dec 2021 13:15:58: #2 alternative fragment length(s) may be 193 bps INFO @ Fri, 10 Dec 2021 13:15:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.20_model.r INFO @ Fri, 10 Dec 2021 13:15:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.05_peaks.xls WARNING @ Fri, 10 Dec 2021 13:15:58: #2 Since the d (193) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 10 Dec 2021 13:15:58: #2 You may need to consider one of the other alternative d(s): 193 WARNING @ Fri, 10 Dec 2021 13:15:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 10 Dec 2021 13:15:58: #3 Call peaks... INFO @ Fri, 10 Dec 2021 13:15:58: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 10 Dec 2021 13:15:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.05_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 13:15:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.05_summits.bed INFO @ Fri, 10 Dec 2021 13:15:59: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3585 records, 4 fields): 29 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 13:16:18: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 13:16:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.10_peaks.xls INFO @ Fri, 10 Dec 2021 13:16:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.10_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 13:16:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.10_summits.bed INFO @ Fri, 10 Dec 2021 13:16:41: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2461 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 13:16:47: #3 Call peaks for each chromosome... INFO @ Fri, 10 Dec 2021 13:17:10: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.20_peaks.xls INFO @ Fri, 10 Dec 2021 13:17:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.20_peaks.narrowPeak INFO @ Fri, 10 Dec 2021 13:17:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8694696/SRX8694696.20_summits.bed INFO @ Fri, 10 Dec 2021 13:17:10: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (1385 records, 4 fields): 3 millis CompletedMACS2peakCalling