Job ID = 14170026 SRX = SRX8556356 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 31845655 spots for SRR12024966/SRR12024966.sra Written 31845655 spots for SRR12024966/SRR12024966.sra fastq に変換しました。 bowtie でマッピング中... Your job 14170744 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:32:58 31845655 reads; of these: 31845655 (100.00%) were paired; of these: 11534070 (36.22%) aligned concordantly 0 times 14177336 (44.52%) aligned concordantly exactly 1 time 6134249 (19.26%) aligned concordantly >1 times ---- 11534070 pairs aligned concordantly 0 times; of these: 4172209 (36.17%) aligned discordantly 1 time ---- 7361861 pairs aligned 0 times concordantly or discordantly; of these: 14723722 mates make up the pairs; of these: 10761376 (73.09%) aligned 0 times 796513 (5.41%) aligned exactly 1 time 3165833 (21.50%) aligned >1 times 83.10% overall alignment rate Time searching: 01:32:58 Overall time: 01:32:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3690208 / 24201413 = 0.1525 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:43:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:43:50: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:43:50: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:43:58: 1000000 INFO @ Sat, 11 Dec 2021 06:44:06: 2000000 INFO @ Sat, 11 Dec 2021 06:44:13: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:44:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:44:20: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:44:20: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:44:21: 4000000 INFO @ Sat, 11 Dec 2021 06:44:29: 1000000 INFO @ Sat, 11 Dec 2021 06:44:30: 5000000 INFO @ Sat, 11 Dec 2021 06:44:38: 2000000 INFO @ Sat, 11 Dec 2021 06:44:39: 6000000 INFO @ Sat, 11 Dec 2021 06:44:47: 3000000 INFO @ Sat, 11 Dec 2021 06:44:48: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 11 Dec 2021 06:44:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 11 Dec 2021 06:44:50: #1 read tag files... INFO @ Sat, 11 Dec 2021 06:44:50: #1 read treatment tags... INFO @ Sat, 11 Dec 2021 06:44:56: 4000000 INFO @ Sat, 11 Dec 2021 06:44:57: 8000000 INFO @ Sat, 11 Dec 2021 06:45:00: 1000000 INFO @ Sat, 11 Dec 2021 06:45:05: 5000000 INFO @ Sat, 11 Dec 2021 06:45:06: 9000000 INFO @ Sat, 11 Dec 2021 06:45:09: 2000000 INFO @ Sat, 11 Dec 2021 06:45:15: 6000000 INFO @ Sat, 11 Dec 2021 06:45:15: 10000000 INFO @ Sat, 11 Dec 2021 06:45:18: 3000000 INFO @ Sat, 11 Dec 2021 06:45:24: 7000000 INFO @ Sat, 11 Dec 2021 06:45:24: 11000000 INFO @ Sat, 11 Dec 2021 06:45:27: 4000000 INFO @ Sat, 11 Dec 2021 06:45:33: 8000000 INFO @ Sat, 11 Dec 2021 06:45:33: 12000000 INFO @ Sat, 11 Dec 2021 06:45:37: 5000000 INFO @ Sat, 11 Dec 2021 06:45:42: 9000000 INFO @ Sat, 11 Dec 2021 06:45:42: 13000000 INFO @ Sat, 11 Dec 2021 06:45:46: 6000000 INFO @ Sat, 11 Dec 2021 06:45:51: 14000000 INFO @ Sat, 11 Dec 2021 06:45:52: 10000000 INFO @ Sat, 11 Dec 2021 06:45:55: 7000000 INFO @ Sat, 11 Dec 2021 06:46:00: 15000000 INFO @ Sat, 11 Dec 2021 06:46:01: 11000000 INFO @ Sat, 11 Dec 2021 06:46:04: 8000000 INFO @ Sat, 11 Dec 2021 06:46:10: 16000000 INFO @ Sat, 11 Dec 2021 06:46:10: 12000000 INFO @ Sat, 11 Dec 2021 06:46:13: 9000000 INFO @ Sat, 11 Dec 2021 06:46:19: 17000000 INFO @ Sat, 11 Dec 2021 06:46:19: 13000000 INFO @ Sat, 11 Dec 2021 06:46:23: 10000000 INFO @ Sat, 11 Dec 2021 06:46:28: 18000000 INFO @ Sat, 11 Dec 2021 06:46:28: 14000000 INFO @ Sat, 11 Dec 2021 06:46:32: 11000000 INFO @ Sat, 11 Dec 2021 06:46:37: 19000000 INFO @ Sat, 11 Dec 2021 06:46:38: 15000000 INFO @ Sat, 11 Dec 2021 06:46:41: 12000000 INFO @ Sat, 11 Dec 2021 06:46:46: 20000000 INFO @ Sat, 11 Dec 2021 06:46:47: 16000000 INFO @ Sat, 11 Dec 2021 06:46:50: 13000000 INFO @ Sat, 11 Dec 2021 06:46:55: 21000000 INFO @ Sat, 11 Dec 2021 06:46:56: 17000000 INFO @ Sat, 11 Dec 2021 06:46:59: 14000000 INFO @ Sat, 11 Dec 2021 06:47:03: 22000000 INFO @ Sat, 11 Dec 2021 06:47:05: 18000000 INFO @ Sat, 11 Dec 2021 06:47:09: 15000000 INFO @ Sat, 11 Dec 2021 06:47:12: 23000000 INFO @ Sat, 11 Dec 2021 06:47:14: 19000000 INFO @ Sat, 11 Dec 2021 06:47:18: 16000000 INFO @ Sat, 11 Dec 2021 06:47:21: 24000000 INFO @ Sat, 11 Dec 2021 06:47:24: 20000000 INFO @ Sat, 11 Dec 2021 06:47:27: 17000000 INFO @ Sat, 11 Dec 2021 06:47:30: 25000000 INFO @ Sat, 11 Dec 2021 06:47:33: 21000000 INFO @ Sat, 11 Dec 2021 06:47:36: 18000000 INFO @ Sat, 11 Dec 2021 06:47:39: 26000000 INFO @ Sat, 11 Dec 2021 06:47:42: 22000000 INFO @ Sat, 11 Dec 2021 06:47:46: 19000000 INFO @ Sat, 11 Dec 2021 06:47:48: 27000000 INFO @ Sat, 11 Dec 2021 06:47:51: 23000000 INFO @ Sat, 11 Dec 2021 06:47:55: 20000000 INFO @ Sat, 11 Dec 2021 06:47:57: 28000000 INFO @ Sat, 11 Dec 2021 06:48:00: 24000000 INFO @ Sat, 11 Dec 2021 06:48:04: 21000000 INFO @ Sat, 11 Dec 2021 06:48:06: 29000000 INFO @ Sat, 11 Dec 2021 06:48:09: 25000000 INFO @ Sat, 11 Dec 2021 06:48:13: 22000000 INFO @ Sat, 11 Dec 2021 06:48:15: 30000000 INFO @ Sat, 11 Dec 2021 06:48:19: 26000000 INFO @ Sat, 11 Dec 2021 06:48:22: 23000000 INFO @ Sat, 11 Dec 2021 06:48:24: 31000000 INFO @ Sat, 11 Dec 2021 06:48:28: 27000000 INFO @ Sat, 11 Dec 2021 06:48:31: 24000000 INFO @ Sat, 11 Dec 2021 06:48:33: 32000000 INFO @ Sat, 11 Dec 2021 06:48:37: 28000000 INFO @ Sat, 11 Dec 2021 06:48:41: 25000000 INFO @ Sat, 11 Dec 2021 06:48:42: 33000000 INFO @ Sat, 11 Dec 2021 06:48:46: 29000000 INFO @ Sat, 11 Dec 2021 06:48:50: 26000000 INFO @ Sat, 11 Dec 2021 06:48:51: 34000000 INFO @ Sat, 11 Dec 2021 06:48:55: 30000000 INFO @ Sat, 11 Dec 2021 06:48:59: 27000000 INFO @ Sat, 11 Dec 2021 06:49:00: 35000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 11 Dec 2021 06:49:04: 31000000 INFO @ Sat, 11 Dec 2021 06:49:08: 28000000 INFO @ Sat, 11 Dec 2021 06:49:09: 36000000 INFO @ Sat, 11 Dec 2021 06:49:13: 32000000 INFO @ Sat, 11 Dec 2021 06:49:17: 29000000 INFO @ Sat, 11 Dec 2021 06:49:18: 37000000 INFO @ Sat, 11 Dec 2021 06:49:22: 33000000 INFO @ Sat, 11 Dec 2021 06:49:26: 30000000 INFO @ Sat, 11 Dec 2021 06:49:27: 38000000 INFO @ Sat, 11 Dec 2021 06:49:31: 34000000 INFO @ Sat, 11 Dec 2021 06:49:35: 31000000 INFO @ Sat, 11 Dec 2021 06:49:36: 39000000 INFO @ Sat, 11 Dec 2021 06:49:40: 35000000 INFO @ Sat, 11 Dec 2021 06:49:44: 32000000 INFO @ Sat, 11 Dec 2021 06:49:46: 40000000 INFO @ Sat, 11 Dec 2021 06:49:49: 36000000 INFO @ Sat, 11 Dec 2021 06:49:53: 33000000 INFO @ Sat, 11 Dec 2021 06:49:55: 41000000 INFO @ Sat, 11 Dec 2021 06:49:59: 37000000 INFO @ Sat, 11 Dec 2021 06:50:02: 34000000 INFO @ Sat, 11 Dec 2021 06:50:04: 42000000 INFO @ Sat, 11 Dec 2021 06:50:08: 38000000 INFO @ Sat, 11 Dec 2021 06:50:11: 35000000 INFO @ Sat, 11 Dec 2021 06:50:13: 43000000 INFO @ Sat, 11 Dec 2021 06:50:17: 39000000 INFO @ Sat, 11 Dec 2021 06:50:21: 36000000 INFO @ Sat, 11 Dec 2021 06:50:22: 44000000 INFO @ Sat, 11 Dec 2021 06:50:27: 40000000 BigWig に変換しました。 INFO @ Sat, 11 Dec 2021 06:50:30: 37000000 INFO @ Sat, 11 Dec 2021 06:50:31: 45000000 INFO @ Sat, 11 Dec 2021 06:50:36: 41000000 INFO @ Sat, 11 Dec 2021 06:50:36: #1 tag size is determined as 150 bps INFO @ Sat, 11 Dec 2021 06:50:36: #1 tag size = 150 INFO @ Sat, 11 Dec 2021 06:50:36: #1 total tags in treatment: 17091972 INFO @ Sat, 11 Dec 2021 06:50:36: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:50:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:50:37: #1 tags after filtering in treatment: 15769300 INFO @ Sat, 11 Dec 2021 06:50:37: #1 Redundant rate of treatment: 0.08 INFO @ Sat, 11 Dec 2021 06:50:37: #1 finished! INFO @ Sat, 11 Dec 2021 06:50:37: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:50:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:50:38: #2 number of paired peaks: 112 WARNING @ Sat, 11 Dec 2021 06:50:38: Fewer paired peaks (112) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 112 pairs to build model! INFO @ Sat, 11 Dec 2021 06:50:38: start model_add_line... INFO @ Sat, 11 Dec 2021 06:50:38: start X-correlation... INFO @ Sat, 11 Dec 2021 06:50:38: end of X-cor INFO @ Sat, 11 Dec 2021 06:50:38: #2 finished! INFO @ Sat, 11 Dec 2021 06:50:38: #2 predicted fragment length is 176 bps INFO @ Sat, 11 Dec 2021 06:50:38: #2 alternative fragment length(s) may be 176 bps INFO @ Sat, 11 Dec 2021 06:50:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.05_model.r WARNING @ Sat, 11 Dec 2021 06:50:38: #2 Since the d (176) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:50:38: #2 You may need to consider one of the other alternative d(s): 176 WARNING @ Sat, 11 Dec 2021 06:50:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:50:38: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:50:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:50:39: 38000000 INFO @ Sat, 11 Dec 2021 06:50:44: 42000000 INFO @ Sat, 11 Dec 2021 06:50:47: 39000000 INFO @ Sat, 11 Dec 2021 06:50:52: 43000000 INFO @ Sat, 11 Dec 2021 06:50:55: 40000000 INFO @ Sat, 11 Dec 2021 06:51:00: 44000000 INFO @ Sat, 11 Dec 2021 06:51:04: 41000000 INFO @ Sat, 11 Dec 2021 06:51:07: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:51:08: 45000000 INFO @ Sat, 11 Dec 2021 06:51:12: 42000000 INFO @ Sat, 11 Dec 2021 06:51:13: #1 tag size is determined as 150 bps INFO @ Sat, 11 Dec 2021 06:51:13: #1 tag size = 150 INFO @ Sat, 11 Dec 2021 06:51:13: #1 total tags in treatment: 17091972 INFO @ Sat, 11 Dec 2021 06:51:13: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:51:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:51:13: #1 tags after filtering in treatment: 15769300 INFO @ Sat, 11 Dec 2021 06:51:13: #1 Redundant rate of treatment: 0.08 INFO @ Sat, 11 Dec 2021 06:51:13: #1 finished! INFO @ Sat, 11 Dec 2021 06:51:13: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:51:13: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:51:14: #2 number of paired peaks: 112 WARNING @ Sat, 11 Dec 2021 06:51:14: Fewer paired peaks (112) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 112 pairs to build model! INFO @ Sat, 11 Dec 2021 06:51:14: start model_add_line... INFO @ Sat, 11 Dec 2021 06:51:14: start X-correlation... INFO @ Sat, 11 Dec 2021 06:51:14: end of X-cor INFO @ Sat, 11 Dec 2021 06:51:14: #2 finished! INFO @ Sat, 11 Dec 2021 06:51:14: #2 predicted fragment length is 176 bps INFO @ Sat, 11 Dec 2021 06:51:14: #2 alternative fragment length(s) may be 176 bps INFO @ Sat, 11 Dec 2021 06:51:14: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.10_model.r WARNING @ Sat, 11 Dec 2021 06:51:14: #2 Since the d (176) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:51:14: #2 You may need to consider one of the other alternative d(s): 176 WARNING @ Sat, 11 Dec 2021 06:51:14: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:51:14: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:51:14: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:51:19: 43000000 INFO @ Sat, 11 Dec 2021 06:51:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.05_peaks.xls INFO @ Sat, 11 Dec 2021 06:51:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.05_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:51:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.05_summits.bed INFO @ Sat, 11 Dec 2021 06:51:22: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2912 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:51:27: 44000000 INFO @ Sat, 11 Dec 2021 06:51:35: 45000000 INFO @ Sat, 11 Dec 2021 06:51:39: #1 tag size is determined as 150 bps INFO @ Sat, 11 Dec 2021 06:51:39: #1 tag size = 150 INFO @ Sat, 11 Dec 2021 06:51:39: #1 total tags in treatment: 17091972 INFO @ Sat, 11 Dec 2021 06:51:39: #1 user defined the maximum tags... INFO @ Sat, 11 Dec 2021 06:51:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 11 Dec 2021 06:51:39: #1 tags after filtering in treatment: 15769300 INFO @ Sat, 11 Dec 2021 06:51:39: #1 Redundant rate of treatment: 0.08 INFO @ Sat, 11 Dec 2021 06:51:39: #1 finished! INFO @ Sat, 11 Dec 2021 06:51:39: #2 Build Peak Model... INFO @ Sat, 11 Dec 2021 06:51:39: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 11 Dec 2021 06:51:40: #2 number of paired peaks: 112 WARNING @ Sat, 11 Dec 2021 06:51:40: Fewer paired peaks (112) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 112 pairs to build model! INFO @ Sat, 11 Dec 2021 06:51:40: start model_add_line... INFO @ Sat, 11 Dec 2021 06:51:40: start X-correlation... INFO @ Sat, 11 Dec 2021 06:51:40: end of X-cor INFO @ Sat, 11 Dec 2021 06:51:40: #2 finished! INFO @ Sat, 11 Dec 2021 06:51:40: #2 predicted fragment length is 176 bps INFO @ Sat, 11 Dec 2021 06:51:40: #2 alternative fragment length(s) may be 176 bps INFO @ Sat, 11 Dec 2021 06:51:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.20_model.r WARNING @ Sat, 11 Dec 2021 06:51:40: #2 Since the d (176) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 11 Dec 2021 06:51:40: #2 You may need to consider one of the other alternative d(s): 176 WARNING @ Sat, 11 Dec 2021 06:51:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 11 Dec 2021 06:51:40: #3 Call peaks... INFO @ Sat, 11 Dec 2021 06:51:40: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 11 Dec 2021 06:51:43: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:51:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.10_peaks.xls INFO @ Sat, 11 Dec 2021 06:51:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.10_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:51:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.10_summits.bed INFO @ Sat, 11 Dec 2021 06:51:59: Done! pass1 - making usageList (15 chroms): 0 millis pass2 - checking and writing primary data (1343 records, 4 fields): 3 millis CompletedMACS2peakCalling INFO @ Sat, 11 Dec 2021 06:52:09: #3 Call peaks for each chromosome... INFO @ Sat, 11 Dec 2021 06:52:24: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.20_peaks.xls INFO @ Sat, 11 Dec 2021 06:52:25: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.20_peaks.narrowPeak INFO @ Sat, 11 Dec 2021 06:52:25: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX8556356/SRX8556356.20_summits.bed INFO @ Sat, 11 Dec 2021 06:52:25: Done! pass1 - making usageList (14 chroms): 0 millis pass2 - checking and writing primary data (570 records, 4 fields): 2 millis CompletedMACS2peakCalling