Job ID = 14167257 SRX = SRX7848957 Genome = dm3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 59023934 spots for SRR11237237/SRR11237237.sra Written 59023934 spots for SRR11237237/SRR11237237.sra fastq に変換しました。 bowtie でマッピング中... Your job 14167926 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:21:02 59023934 reads; of these: 59023934 (100.00%) were unpaired; of these: 1875667 (3.18%) aligned 0 times 39004175 (66.08%) aligned exactly 1 time 18144092 (30.74%) aligned >1 times 96.82% overall alignment rate Time searching: 00:21:02 Overall time: 00:21:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdupse_core] 15546021 / 57148267 = 0.2720 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 11:53:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 11:53:59: #1 read tag files... INFO @ Fri, 10 Dec 2021 11:53:59: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 11:54:04: 1000000 INFO @ Fri, 10 Dec 2021 11:54:09: 2000000 INFO @ Fri, 10 Dec 2021 11:54:14: 3000000 INFO @ Fri, 10 Dec 2021 11:54:19: 4000000 INFO @ Fri, 10 Dec 2021 11:54:23: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 11:54:28: 6000000 INFO @ Fri, 10 Dec 2021 11:54:29: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 11:54:29: #1 read tag files... INFO @ Fri, 10 Dec 2021 11:54:29: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 11:54:33: 7000000 INFO @ Fri, 10 Dec 2021 11:54:34: 1000000 INFO @ Fri, 10 Dec 2021 11:54:38: 8000000 INFO @ Fri, 10 Dec 2021 11:54:39: 2000000 INFO @ Fri, 10 Dec 2021 11:54:43: 9000000 INFO @ Fri, 10 Dec 2021 11:54:44: 3000000 INFO @ Fri, 10 Dec 2021 11:54:48: 10000000 INFO @ Fri, 10 Dec 2021 11:54:49: 4000000 INFO @ Fri, 10 Dec 2021 11:54:53: 11000000 INFO @ Fri, 10 Dec 2021 11:54:54: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 10 Dec 2021 11:54:58: 12000000 INFO @ Fri, 10 Dec 2021 11:54:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 10 Dec 2021 11:54:59: #1 read tag files... INFO @ Fri, 10 Dec 2021 11:54:59: #1 read treatment tags... INFO @ Fri, 10 Dec 2021 11:54:59: 6000000 INFO @ Fri, 10 Dec 2021 11:55:03: 13000000 INFO @ Fri, 10 Dec 2021 11:55:04: 1000000 INFO @ Fri, 10 Dec 2021 11:55:04: 7000000 INFO @ Fri, 10 Dec 2021 11:55:08: 14000000 INFO @ Fri, 10 Dec 2021 11:55:09: 2000000 INFO @ Fri, 10 Dec 2021 11:55:09: 8000000 INFO @ Fri, 10 Dec 2021 11:55:13: 15000000 INFO @ Fri, 10 Dec 2021 11:55:14: 9000000 INFO @ Fri, 10 Dec 2021 11:55:14: 3000000 INFO @ Fri, 10 Dec 2021 11:55:18: 16000000 INFO @ Fri, 10 Dec 2021 11:55:19: 10000000 INFO @ Fri, 10 Dec 2021 11:55:19: 4000000 INFO @ Fri, 10 Dec 2021 11:55:23: 17000000 INFO @ Fri, 10 Dec 2021 11:55:24: 11000000 INFO @ Fri, 10 Dec 2021 11:55:24: 5000000 INFO @ Fri, 10 Dec 2021 11:55:28: 18000000 INFO @ Fri, 10 Dec 2021 11:55:29: 12000000 INFO @ Fri, 10 Dec 2021 11:55:29: 6000000 INFO @ Fri, 10 Dec 2021 11:55:33: 19000000 INFO @ Fri, 10 Dec 2021 11:55:34: 13000000 INFO @ Fri, 10 Dec 2021 11:55:34: 7000000 INFO @ Fri, 10 Dec 2021 11:55:38: 20000000 INFO @ Fri, 10 Dec 2021 11:55:39: 8000000 INFO @ Fri, 10 Dec 2021 11:55:39: 14000000 INFO @ Fri, 10 Dec 2021 11:55:43: 21000000 INFO @ Fri, 10 Dec 2021 11:55:44: 9000000 INFO @ Fri, 10 Dec 2021 11:55:44: 15000000 INFO @ Fri, 10 Dec 2021 11:55:48: 22000000 INFO @ Fri, 10 Dec 2021 11:55:49: 10000000 INFO @ Fri, 10 Dec 2021 11:55:49: 16000000 INFO @ Fri, 10 Dec 2021 11:55:53: 23000000 INFO @ Fri, 10 Dec 2021 11:55:54: 11000000 INFO @ Fri, 10 Dec 2021 11:55:54: 17000000 INFO @ Fri, 10 Dec 2021 11:55:58: 24000000 INFO @ Fri, 10 Dec 2021 11:55:59: 12000000 INFO @ Fri, 10 Dec 2021 11:55:59: 18000000 INFO @ Fri, 10 Dec 2021 11:56:03: 25000000 INFO @ Fri, 10 Dec 2021 11:56:04: 13000000 INFO @ Fri, 10 Dec 2021 11:56:04: 19000000 INFO @ Fri, 10 Dec 2021 11:56:08: 26000000 INFO @ Fri, 10 Dec 2021 11:56:09: 14000000 INFO @ Fri, 10 Dec 2021 11:56:10: 20000000 INFO @ Fri, 10 Dec 2021 11:56:13: 27000000 INFO @ Fri, 10 Dec 2021 11:56:14: 15000000 INFO @ Fri, 10 Dec 2021 11:56:15: 21000000 INFO @ Fri, 10 Dec 2021 11:56:18: 28000000 INFO @ Fri, 10 Dec 2021 11:56:19: 16000000 INFO @ Fri, 10 Dec 2021 11:56:20: 22000000 INFO @ Fri, 10 Dec 2021 11:56:23: 29000000 INFO @ Fri, 10 Dec 2021 11:56:24: 17000000 INFO @ Fri, 10 Dec 2021 11:56:25: 23000000 INFO @ Fri, 10 Dec 2021 11:56:28: 30000000 INFO @ Fri, 10 Dec 2021 11:56:29: 18000000 INFO @ Fri, 10 Dec 2021 11:56:30: 24000000 INFO @ Fri, 10 Dec 2021 11:56:33: 31000000 INFO @ Fri, 10 Dec 2021 11:56:34: 19000000 INFO @ Fri, 10 Dec 2021 11:56:35: 25000000 INFO @ Fri, 10 Dec 2021 11:56:38: 32000000 INFO @ Fri, 10 Dec 2021 11:56:39: 20000000 INFO @ Fri, 10 Dec 2021 11:56:40: 26000000 INFO @ Fri, 10 Dec 2021 11:56:43: 33000000 INFO @ Fri, 10 Dec 2021 11:56:44: 21000000 INFO @ Fri, 10 Dec 2021 11:56:45: 27000000 INFO @ Fri, 10 Dec 2021 11:56:48: 34000000 INFO @ Fri, 10 Dec 2021 11:56:49: 22000000 INFO @ Fri, 10 Dec 2021 11:56:50: 28000000 INFO @ Fri, 10 Dec 2021 11:56:53: 35000000 INFO @ Fri, 10 Dec 2021 11:56:54: 23000000 INFO @ Fri, 10 Dec 2021 11:56:55: 29000000 INFO @ Fri, 10 Dec 2021 11:56:58: 36000000 INFO @ Fri, 10 Dec 2021 11:56:59: 24000000 INFO @ Fri, 10 Dec 2021 11:57:00: 30000000 INFO @ Fri, 10 Dec 2021 11:57:03: 37000000 INFO @ Fri, 10 Dec 2021 11:57:04: 25000000 INFO @ Fri, 10 Dec 2021 11:57:05: 31000000 INFO @ Fri, 10 Dec 2021 11:57:08: 38000000 INFO @ Fri, 10 Dec 2021 11:57:09: 26000000 INFO @ Fri, 10 Dec 2021 11:57:10: 32000000 INFO @ Fri, 10 Dec 2021 11:57:13: 39000000 INFO @ Fri, 10 Dec 2021 11:57:14: 27000000 INFO @ Fri, 10 Dec 2021 11:57:15: 33000000 INFO @ Fri, 10 Dec 2021 11:57:18: 40000000 INFO @ Fri, 10 Dec 2021 11:57:19: 28000000 INFO @ Fri, 10 Dec 2021 11:57:20: 34000000 INFO @ Fri, 10 Dec 2021 11:57:23: 41000000 INFO @ Fri, 10 Dec 2021 11:57:24: 29000000 INFO @ Fri, 10 Dec 2021 11:57:25: 35000000 INFO @ Fri, 10 Dec 2021 11:57:26: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 11:57:26: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 11:57:26: #1 total tags in treatment: 41602246 INFO @ Fri, 10 Dec 2021 11:57:26: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 11:57:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 11:57:27: #1 tags after filtering in treatment: 41602246 INFO @ Fri, 10 Dec 2021 11:57:27: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Dec 2021 11:57:27: #1 finished! INFO @ Fri, 10 Dec 2021 11:57:27: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 11:57:27: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 11:57:29: 30000000 INFO @ Fri, 10 Dec 2021 11:57:29: #2 number of paired peaks: 26 WARNING @ Fri, 10 Dec 2021 11:57:29: Too few paired peaks (26) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 10 Dec 2021 11:57:29: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 11:57:30: 36000000 INFO @ Fri, 10 Dec 2021 11:57:34: 31000000 INFO @ Fri, 10 Dec 2021 11:57:35: 37000000 INFO @ Fri, 10 Dec 2021 11:57:39: 32000000 INFO @ Fri, 10 Dec 2021 11:57:40: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 10 Dec 2021 11:57:44: 33000000 INFO @ Fri, 10 Dec 2021 11:57:45: 39000000 INFO @ Fri, 10 Dec 2021 11:57:50: 34000000 INFO @ Fri, 10 Dec 2021 11:57:50: 40000000 INFO @ Fri, 10 Dec 2021 11:57:55: 35000000 INFO @ Fri, 10 Dec 2021 11:57:56: 41000000 INFO @ Fri, 10 Dec 2021 11:57:59: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 11:57:59: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 11:57:59: #1 total tags in treatment: 41602246 INFO @ Fri, 10 Dec 2021 11:57:59: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 11:57:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 11:58:00: #1 tags after filtering in treatment: 41602246 INFO @ Fri, 10 Dec 2021 11:58:00: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Dec 2021 11:58:00: #1 finished! INFO @ Fri, 10 Dec 2021 11:58:00: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 11:58:00: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 11:58:00: 36000000 INFO @ Fri, 10 Dec 2021 11:58:02: #2 number of paired peaks: 26 WARNING @ Fri, 10 Dec 2021 11:58:02: Too few paired peaks (26) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 10 Dec 2021 11:58:02: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 10 Dec 2021 11:58:05: 37000000 INFO @ Fri, 10 Dec 2021 11:58:10: 38000000 INFO @ Fri, 10 Dec 2021 11:58:14: 39000000 INFO @ Fri, 10 Dec 2021 11:58:19: 40000000 INFO @ Fri, 10 Dec 2021 11:58:24: 41000000 INFO @ Fri, 10 Dec 2021 11:58:27: #1 tag size is determined as 51 bps INFO @ Fri, 10 Dec 2021 11:58:27: #1 tag size = 51 INFO @ Fri, 10 Dec 2021 11:58:27: #1 total tags in treatment: 41602246 INFO @ Fri, 10 Dec 2021 11:58:27: #1 user defined the maximum tags... INFO @ Fri, 10 Dec 2021 11:58:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 10 Dec 2021 11:58:28: #1 tags after filtering in treatment: 41602246 INFO @ Fri, 10 Dec 2021 11:58:28: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 10 Dec 2021 11:58:28: #1 finished! INFO @ Fri, 10 Dec 2021 11:58:28: #2 Build Peak Model... INFO @ Fri, 10 Dec 2021 11:58:28: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 10 Dec 2021 11:58:31: #2 number of paired peaks: 26 WARNING @ Fri, 10 Dec 2021 11:58:31: Too few paired peaks (26) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 10 Dec 2021 11:58:31: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/dm3/SRX7848957/SRX7848957.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。