Job ID = 12266637 SRX = SRX7572779 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 44982097 spots for SRR10904626/SRR10904626.sra Written 44982097 spots for SRR10904626/SRR10904626.sra fastq に変換しました。 bowtie でマッピング中... Your job 12269866 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:05:52 44982097 reads; of these: 44982097 (100.00%) were paired; of these: 19926099 (44.30%) aligned concordantly 0 times 20028591 (44.53%) aligned concordantly exactly 1 time 5027407 (11.18%) aligned concordantly >1 times ---- 19926099 pairs aligned concordantly 0 times; of these: 6072749 (30.48%) aligned discordantly 1 time ---- 13853350 pairs aligned 0 times concordantly or discordantly; of these: 27706700 mates make up the pairs; of these: 23311643 (84.14%) aligned 0 times 1143446 (4.13%) aligned exactly 1 time 3251611 (11.74%) aligned >1 times 74.09% overall alignment rate Time searching: 02:05:52 Overall time: 02:05:52 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8017072 / 30973186 = 0.2588 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:49:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:49:22: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:49:22: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:49:29: 1000000 INFO @ Sat, 03 Apr 2021 11:49:35: 2000000 INFO @ Sat, 03 Apr 2021 11:49:42: 3000000 INFO @ Sat, 03 Apr 2021 11:49:49: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:49:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:49:52: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:49:52: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:49:56: 5000000 INFO @ Sat, 03 Apr 2021 11:49:59: 1000000 INFO @ Sat, 03 Apr 2021 11:50:03: 6000000 INFO @ Sat, 03 Apr 2021 11:50:06: 2000000 INFO @ Sat, 03 Apr 2021 11:50:09: 7000000 INFO @ Sat, 03 Apr 2021 11:50:13: 3000000 INFO @ Sat, 03 Apr 2021 11:50:16: 8000000 INFO @ Sat, 03 Apr 2021 11:50:20: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:50:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:50:22: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:50:22: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:50:23: 9000000 INFO @ Sat, 03 Apr 2021 11:50:27: 5000000 INFO @ Sat, 03 Apr 2021 11:50:29: 1000000 INFO @ Sat, 03 Apr 2021 11:50:31: 10000000 INFO @ Sat, 03 Apr 2021 11:50:34: 6000000 INFO @ Sat, 03 Apr 2021 11:50:37: 2000000 INFO @ Sat, 03 Apr 2021 11:50:38: 11000000 INFO @ Sat, 03 Apr 2021 11:50:41: 7000000 INFO @ Sat, 03 Apr 2021 11:50:44: 3000000 INFO @ Sat, 03 Apr 2021 11:50:45: 12000000 INFO @ Sat, 03 Apr 2021 11:50:47: 8000000 INFO @ Sat, 03 Apr 2021 11:50:52: 4000000 INFO @ Sat, 03 Apr 2021 11:50:52: 13000000 INFO @ Sat, 03 Apr 2021 11:50:54: 9000000 INFO @ Sat, 03 Apr 2021 11:50:59: 5000000 INFO @ Sat, 03 Apr 2021 11:50:59: 14000000 INFO @ Sat, 03 Apr 2021 11:51:01: 10000000 INFO @ Sat, 03 Apr 2021 11:51:07: 15000000 INFO @ Sat, 03 Apr 2021 11:51:07: 6000000 INFO @ Sat, 03 Apr 2021 11:51:08: 11000000 INFO @ Sat, 03 Apr 2021 11:51:13: 16000000 INFO @ Sat, 03 Apr 2021 11:51:14: 7000000 INFO @ Sat, 03 Apr 2021 11:51:15: 12000000 INFO @ Sat, 03 Apr 2021 11:51:20: 17000000 INFO @ Sat, 03 Apr 2021 11:51:21: 8000000 INFO @ Sat, 03 Apr 2021 11:51:22: 13000000 INFO @ Sat, 03 Apr 2021 11:51:27: 18000000 INFO @ Sat, 03 Apr 2021 11:51:28: 9000000 INFO @ Sat, 03 Apr 2021 11:51:28: 14000000 INFO @ Sat, 03 Apr 2021 11:51:33: 19000000 INFO @ Sat, 03 Apr 2021 11:51:35: 10000000 INFO @ Sat, 03 Apr 2021 11:51:35: 15000000 INFO @ Sat, 03 Apr 2021 11:51:40: 20000000 INFO @ Sat, 03 Apr 2021 11:51:41: 16000000 INFO @ Sat, 03 Apr 2021 11:51:42: 11000000 INFO @ Sat, 03 Apr 2021 11:51:47: 21000000 INFO @ Sat, 03 Apr 2021 11:51:48: 17000000 INFO @ Sat, 03 Apr 2021 11:51:49: 12000000 INFO @ Sat, 03 Apr 2021 11:51:54: 22000000 INFO @ Sat, 03 Apr 2021 11:51:55: 18000000 INFO @ Sat, 03 Apr 2021 11:51:55: 13000000 INFO @ Sat, 03 Apr 2021 11:52:00: 23000000 INFO @ Sat, 03 Apr 2021 11:52:01: 19000000 INFO @ Sat, 03 Apr 2021 11:52:02: 14000000 INFO @ Sat, 03 Apr 2021 11:52:07: 24000000 INFO @ Sat, 03 Apr 2021 11:52:08: 20000000 INFO @ Sat, 03 Apr 2021 11:52:09: 15000000 INFO @ Sat, 03 Apr 2021 11:52:14: 25000000 INFO @ Sat, 03 Apr 2021 11:52:15: 21000000 INFO @ Sat, 03 Apr 2021 11:52:16: 16000000 INFO @ Sat, 03 Apr 2021 11:52:21: 26000000 INFO @ Sat, 03 Apr 2021 11:52:22: 22000000 INFO @ Sat, 03 Apr 2021 11:52:22: 17000000 INFO @ Sat, 03 Apr 2021 11:52:28: 27000000 INFO @ Sat, 03 Apr 2021 11:52:28: 23000000 INFO @ Sat, 03 Apr 2021 11:52:29: 18000000 INFO @ Sat, 03 Apr 2021 11:52:35: 28000000 INFO @ Sat, 03 Apr 2021 11:52:35: 24000000 INFO @ Sat, 03 Apr 2021 11:52:36: 19000000 INFO @ Sat, 03 Apr 2021 11:52:41: 29000000 INFO @ Sat, 03 Apr 2021 11:52:42: 25000000 INFO @ Sat, 03 Apr 2021 11:52:43: 20000000 INFO @ Sat, 03 Apr 2021 11:52:48: 30000000 INFO @ Sat, 03 Apr 2021 11:52:48: 26000000 INFO @ Sat, 03 Apr 2021 11:52:50: 21000000 INFO @ Sat, 03 Apr 2021 11:52:55: 31000000 INFO @ Sat, 03 Apr 2021 11:52:55: 27000000 INFO @ Sat, 03 Apr 2021 11:52:57: 22000000 INFO @ Sat, 03 Apr 2021 11:53:02: 32000000 INFO @ Sat, 03 Apr 2021 11:53:02: 28000000 INFO @ Sat, 03 Apr 2021 11:53:03: 23000000 INFO @ Sat, 03 Apr 2021 11:53:09: 33000000 INFO @ Sat, 03 Apr 2021 11:53:09: 29000000 INFO @ Sat, 03 Apr 2021 11:53:10: 24000000 INFO @ Sat, 03 Apr 2021 11:53:15: 34000000 INFO @ Sat, 03 Apr 2021 11:53:16: 30000000 INFO @ Sat, 03 Apr 2021 11:53:17: 25000000 INFO @ Sat, 03 Apr 2021 11:53:22: 35000000 INFO @ Sat, 03 Apr 2021 11:53:22: 31000000 INFO @ Sat, 03 Apr 2021 11:53:24: 26000000 INFO @ Sat, 03 Apr 2021 11:53:29: 36000000 INFO @ Sat, 03 Apr 2021 11:53:29: 32000000 INFO @ Sat, 03 Apr 2021 11:53:32: 27000000 INFO @ Sat, 03 Apr 2021 11:53:36: 37000000 INFO @ Sat, 03 Apr 2021 11:53:36: 33000000 INFO @ Sat, 03 Apr 2021 11:53:39: 28000000 INFO @ Sat, 03 Apr 2021 11:53:43: 34000000 INFO @ Sat, 03 Apr 2021 11:53:43: 38000000 INFO @ Sat, 03 Apr 2021 11:53:45: 29000000 INFO @ Sat, 03 Apr 2021 11:53:49: 35000000 INFO @ Sat, 03 Apr 2021 11:53:50: 39000000 INFO @ Sat, 03 Apr 2021 11:53:52: 30000000 INFO @ Sat, 03 Apr 2021 11:53:56: 36000000 INFO @ Sat, 03 Apr 2021 11:53:56: 40000000 INFO @ Sat, 03 Apr 2021 11:53:59: 31000000 INFO @ Sat, 03 Apr 2021 11:54:03: 37000000 INFO @ Sat, 03 Apr 2021 11:54:04: 41000000 INFO @ Sat, 03 Apr 2021 11:54:05: 32000000 INFO @ Sat, 03 Apr 2021 11:54:09: 38000000 INFO @ Sat, 03 Apr 2021 11:54:11: 42000000 INFO @ Sat, 03 Apr 2021 11:54:12: 33000000 INFO @ Sat, 03 Apr 2021 11:54:16: 39000000 INFO @ Sat, 03 Apr 2021 11:54:18: 43000000 INFO @ Sat, 03 Apr 2021 11:54:19: 34000000 INFO @ Sat, 03 Apr 2021 11:54:23: 40000000 INFO @ Sat, 03 Apr 2021 11:54:25: 44000000 INFO @ Sat, 03 Apr 2021 11:54:26: 35000000 INFO @ Sat, 03 Apr 2021 11:54:30: 41000000 INFO @ Sat, 03 Apr 2021 11:54:32: 45000000 INFO @ Sat, 03 Apr 2021 11:54:33: 36000000 INFO @ Sat, 03 Apr 2021 11:54:37: 42000000 INFO @ Sat, 03 Apr 2021 11:54:40: 46000000 INFO @ Sat, 03 Apr 2021 11:54:40: 37000000 INFO @ Sat, 03 Apr 2021 11:54:45: 43000000 INFO @ Sat, 03 Apr 2021 11:54:47: 47000000 INFO @ Sat, 03 Apr 2021 11:54:47: 38000000 INFO @ Sat, 03 Apr 2021 11:54:52: 44000000 INFO @ Sat, 03 Apr 2021 11:54:54: 39000000 INFO @ Sat, 03 Apr 2021 11:54:54: 48000000 INFO @ Sat, 03 Apr 2021 11:54:59: 45000000 INFO @ Sat, 03 Apr 2021 11:55:01: 40000000 INFO @ Sat, 03 Apr 2021 11:55:01: 49000000 INFO @ Sat, 03 Apr 2021 11:55:06: 46000000 INFO @ Sat, 03 Apr 2021 11:55:08: 41000000 INFO @ Sat, 03 Apr 2021 11:55:08: 50000000 INFO @ Sat, 03 Apr 2021 11:55:13: 47000000 INFO @ Sat, 03 Apr 2021 11:55:13: #1 tag size is determined as 151 bps INFO @ Sat, 03 Apr 2021 11:55:13: #1 tag size = 151 INFO @ Sat, 03 Apr 2021 11:55:13: #1 total tags in treatment: 18269870 INFO @ Sat, 03 Apr 2021 11:55:13: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:55:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:55:13: #1 tags after filtering in treatment: 14362737 INFO @ Sat, 03 Apr 2021 11:55:13: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 11:55:13: #1 finished! INFO @ Sat, 03 Apr 2021 11:55:13: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:55:13: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:55:15: #2 number of paired peaks: 171 WARNING @ Sat, 03 Apr 2021 11:55:15: Fewer paired peaks (171) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 171 pairs to build model! INFO @ Sat, 03 Apr 2021 11:55:15: start model_add_line... INFO @ Sat, 03 Apr 2021 11:55:15: start X-correlation... INFO @ Sat, 03 Apr 2021 11:55:15: end of X-cor INFO @ Sat, 03 Apr 2021 11:55:15: #2 finished! INFO @ Sat, 03 Apr 2021 11:55:15: #2 predicted fragment length is 206 bps INFO @ Sat, 03 Apr 2021 11:55:15: #2 alternative fragment length(s) may be 206,227 bps INFO @ Sat, 03 Apr 2021 11:55:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.05_model.r WARNING @ Sat, 03 Apr 2021 11:55:15: #2 Since the d (206) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:55:15: #2 You may need to consider one of the other alternative d(s): 206,227 WARNING @ Sat, 03 Apr 2021 11:55:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:55:15: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:55:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:55:15: 42000000 INFO @ Sat, 03 Apr 2021 11:55:20: 48000000 INFO @ Sat, 03 Apr 2021 11:55:23: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 11:55:27: 49000000 INFO @ Sat, 03 Apr 2021 11:55:29: 44000000 INFO @ Sat, 03 Apr 2021 11:55:34: 50000000 INFO @ Sat, 03 Apr 2021 11:55:37: 45000000 INFO @ Sat, 03 Apr 2021 11:55:38: #1 tag size is determined as 151 bps INFO @ Sat, 03 Apr 2021 11:55:38: #1 tag size = 151 INFO @ Sat, 03 Apr 2021 11:55:38: #1 total tags in treatment: 18269870 INFO @ Sat, 03 Apr 2021 11:55:38: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:55:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:55:39: #1 tags after filtering in treatment: 14362737 INFO @ Sat, 03 Apr 2021 11:55:39: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 11:55:39: #1 finished! INFO @ Sat, 03 Apr 2021 11:55:39: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:55:39: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:55:40: #2 number of paired peaks: 171 WARNING @ Sat, 03 Apr 2021 11:55:40: Fewer paired peaks (171) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 171 pairs to build model! INFO @ Sat, 03 Apr 2021 11:55:40: start model_add_line... INFO @ Sat, 03 Apr 2021 11:55:40: start X-correlation... INFO @ Sat, 03 Apr 2021 11:55:40: end of X-cor INFO @ Sat, 03 Apr 2021 11:55:40: #2 finished! INFO @ Sat, 03 Apr 2021 11:55:40: #2 predicted fragment length is 206 bps INFO @ Sat, 03 Apr 2021 11:55:40: #2 alternative fragment length(s) may be 206,227 bps INFO @ Sat, 03 Apr 2021 11:55:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.10_model.r WARNING @ Sat, 03 Apr 2021 11:55:40: #2 Since the d (206) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:55:40: #2 You may need to consider one of the other alternative d(s): 206,227 WARNING @ Sat, 03 Apr 2021 11:55:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:55:40: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:55:40: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:55:44: 46000000 INFO @ Sat, 03 Apr 2021 11:55:51: 47000000 INFO @ Sat, 03 Apr 2021 11:55:53: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:55:57: 48000000 INFO @ Sat, 03 Apr 2021 11:56:04: 49000000 INFO @ Sat, 03 Apr 2021 11:56:11: 50000000 INFO @ Sat, 03 Apr 2021 11:56:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.05_peaks.xls INFO @ Sat, 03 Apr 2021 11:56:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:56:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.05_summits.bed INFO @ Sat, 03 Apr 2021 11:56:12: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (6352 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 11:56:15: #1 tag size is determined as 151 bps INFO @ Sat, 03 Apr 2021 11:56:15: #1 tag size = 151 INFO @ Sat, 03 Apr 2021 11:56:15: #1 total tags in treatment: 18269870 INFO @ Sat, 03 Apr 2021 11:56:15: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:56:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:56:16: #1 tags after filtering in treatment: 14362737 INFO @ Sat, 03 Apr 2021 11:56:16: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 11:56:16: #1 finished! INFO @ Sat, 03 Apr 2021 11:56:16: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:56:16: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:56:17: #2 number of paired peaks: 171 WARNING @ Sat, 03 Apr 2021 11:56:17: Fewer paired peaks (171) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 171 pairs to build model! INFO @ Sat, 03 Apr 2021 11:56:17: start model_add_line... INFO @ Sat, 03 Apr 2021 11:56:17: start X-correlation... INFO @ Sat, 03 Apr 2021 11:56:17: end of X-cor INFO @ Sat, 03 Apr 2021 11:56:17: #2 finished! INFO @ Sat, 03 Apr 2021 11:56:17: #2 predicted fragment length is 206 bps INFO @ Sat, 03 Apr 2021 11:56:17: #2 alternative fragment length(s) may be 206,227 bps INFO @ Sat, 03 Apr 2021 11:56:17: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.20_model.r WARNING @ Sat, 03 Apr 2021 11:56:17: #2 Since the d (206) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:56:17: #2 You may need to consider one of the other alternative d(s): 206,227 WARNING @ Sat, 03 Apr 2021 11:56:17: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:56:17: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:56:17: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:56:17: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:56:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.10_peaks.xls INFO @ Sat, 03 Apr 2021 11:56:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:56:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.10_summits.bed INFO @ Sat, 03 Apr 2021 11:56:35: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2336 records, 4 fields): 4 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 11:56:53: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:57:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.20_peaks.xls INFO @ Sat, 03 Apr 2021 11:57:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:57:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7572779/SRX7572779.20_summits.bed INFO @ Sat, 03 Apr 2021 11:57:11: Done! pass1 - making usageList (10 chroms): 0 millis pass2 - checking and writing primary data (410 records, 4 fields): 2 millis CompletedMACS2peakCalling