Job ID = 12266633 SRX = SRX7572775 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 47239648 spots for SRR10904622/SRR10904622.sra Written 47239648 spots for SRR10904622/SRR10904622.sra fastq に変換しました。 bowtie でマッピング中... Your job 12270047 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:14:14 47239648 reads; of these: 47239648 (100.00%) were paired; of these: 20625950 (43.66%) aligned concordantly 0 times 19888857 (42.10%) aligned concordantly exactly 1 time 6724841 (14.24%) aligned concordantly >1 times ---- 20625950 pairs aligned concordantly 0 times; of these: 6380845 (30.94%) aligned discordantly 1 time ---- 14245105 pairs aligned 0 times concordantly or discordantly; of these: 28490210 mates make up the pairs; of these: 22668394 (79.57%) aligned 0 times 1495010 (5.25%) aligned exactly 1 time 4326806 (15.19%) aligned >1 times 76.01% overall alignment rate Time searching: 02:14:14 Overall time: 02:14:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 10068816 / 32801729 = 0.3070 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:57:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:57:20: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:57:20: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:57:30: 1000000 INFO @ Sat, 03 Apr 2021 11:57:39: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:57:49: 3000000 INFO @ Sat, 03 Apr 2021 11:57:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:57:50: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:57:50: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:57:59: 4000000 INFO @ Sat, 03 Apr 2021 11:58:00: 1000000 INFO @ Sat, 03 Apr 2021 11:58:09: 5000000 INFO @ Sat, 03 Apr 2021 11:58:11: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 11:58:20: 6000000 INFO @ Sat, 03 Apr 2021 11:58:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 11:58:20: #1 read tag files... INFO @ Sat, 03 Apr 2021 11:58:20: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 11:58:21: 3000000 INFO @ Sat, 03 Apr 2021 11:58:30: 7000000 INFO @ Sat, 03 Apr 2021 11:58:31: 4000000 INFO @ Sat, 03 Apr 2021 11:58:31: 1000000 INFO @ Sat, 03 Apr 2021 11:58:41: 5000000 INFO @ Sat, 03 Apr 2021 11:58:41: 8000000 INFO @ Sat, 03 Apr 2021 11:58:41: 2000000 INFO @ Sat, 03 Apr 2021 11:58:51: 6000000 INFO @ Sat, 03 Apr 2021 11:58:52: 9000000 INFO @ Sat, 03 Apr 2021 11:58:52: 3000000 INFO @ Sat, 03 Apr 2021 11:59:01: 7000000 INFO @ Sat, 03 Apr 2021 11:59:02: 10000000 INFO @ Sat, 03 Apr 2021 11:59:03: 4000000 INFO @ Sat, 03 Apr 2021 11:59:11: 8000000 INFO @ Sat, 03 Apr 2021 11:59:13: 5000000 INFO @ Sat, 03 Apr 2021 11:59:13: 11000000 INFO @ Sat, 03 Apr 2021 11:59:21: 9000000 INFO @ Sat, 03 Apr 2021 11:59:23: 6000000 INFO @ Sat, 03 Apr 2021 11:59:25: 12000000 INFO @ Sat, 03 Apr 2021 11:59:31: 10000000 INFO @ Sat, 03 Apr 2021 11:59:34: 7000000 INFO @ Sat, 03 Apr 2021 11:59:37: 13000000 INFO @ Sat, 03 Apr 2021 11:59:41: 11000000 INFO @ Sat, 03 Apr 2021 11:59:44: 8000000 INFO @ Sat, 03 Apr 2021 11:59:48: 14000000 INFO @ Sat, 03 Apr 2021 11:59:51: 12000000 INFO @ Sat, 03 Apr 2021 11:59:55: 9000000 INFO @ Sat, 03 Apr 2021 12:00:00: 15000000 INFO @ Sat, 03 Apr 2021 12:00:02: 13000000 INFO @ Sat, 03 Apr 2021 12:00:06: 10000000 INFO @ Sat, 03 Apr 2021 12:00:11: 16000000 INFO @ Sat, 03 Apr 2021 12:00:12: 14000000 INFO @ Sat, 03 Apr 2021 12:00:19: 11000000 INFO @ Sat, 03 Apr 2021 12:00:22: 17000000 INFO @ Sat, 03 Apr 2021 12:00:23: 15000000 INFO @ Sat, 03 Apr 2021 12:00:31: 12000000 INFO @ Sat, 03 Apr 2021 12:00:33: 16000000 INFO @ Sat, 03 Apr 2021 12:00:34: 18000000 INFO @ Sat, 03 Apr 2021 12:00:41: 13000000 INFO @ Sat, 03 Apr 2021 12:00:43: 17000000 INFO @ Sat, 03 Apr 2021 12:00:45: 19000000 INFO @ Sat, 03 Apr 2021 12:00:52: 14000000 INFO @ Sat, 03 Apr 2021 12:00:54: 18000000 INFO @ Sat, 03 Apr 2021 12:00:56: 20000000 INFO @ Sat, 03 Apr 2021 12:01:03: 15000000 INFO @ Sat, 03 Apr 2021 12:01:04: 19000000 INFO @ Sat, 03 Apr 2021 12:01:07: 21000000 INFO @ Sat, 03 Apr 2021 12:01:14: 16000000 INFO @ Sat, 03 Apr 2021 12:01:15: 20000000 INFO @ Sat, 03 Apr 2021 12:01:19: 22000000 INFO @ Sat, 03 Apr 2021 12:01:23: 17000000 INFO @ Sat, 03 Apr 2021 12:01:25: 21000000 INFO @ Sat, 03 Apr 2021 12:01:30: 23000000 INFO @ Sat, 03 Apr 2021 12:01:33: 18000000 INFO @ Sat, 03 Apr 2021 12:01:35: 22000000 INFO @ Sat, 03 Apr 2021 12:01:40: 24000000 INFO @ Sat, 03 Apr 2021 12:01:43: 19000000 INFO @ Sat, 03 Apr 2021 12:01:45: 23000000 INFO @ Sat, 03 Apr 2021 12:01:51: 25000000 INFO @ Sat, 03 Apr 2021 12:01:53: 20000000 INFO @ Sat, 03 Apr 2021 12:01:55: 24000000 INFO @ Sat, 03 Apr 2021 12:02:02: 26000000 INFO @ Sat, 03 Apr 2021 12:02:03: 21000000 INFO @ Sat, 03 Apr 2021 12:02:06: 25000000 INFO @ Sat, 03 Apr 2021 12:02:13: 22000000 INFO @ Sat, 03 Apr 2021 12:02:13: 27000000 INFO @ Sat, 03 Apr 2021 12:02:16: 26000000 INFO @ Sat, 03 Apr 2021 12:02:22: 23000000 INFO @ Sat, 03 Apr 2021 12:02:24: 28000000 INFO @ Sat, 03 Apr 2021 12:02:26: 27000000 INFO @ Sat, 03 Apr 2021 12:02:33: 24000000 INFO @ Sat, 03 Apr 2021 12:02:35: 29000000 INFO @ Sat, 03 Apr 2021 12:02:37: 28000000 INFO @ Sat, 03 Apr 2021 12:02:44: 25000000 INFO @ Sat, 03 Apr 2021 12:02:46: 30000000 INFO @ Sat, 03 Apr 2021 12:02:47: 29000000 INFO @ Sat, 03 Apr 2021 12:02:55: 26000000 INFO @ Sat, 03 Apr 2021 12:02:57: 31000000 INFO @ Sat, 03 Apr 2021 12:02:57: 30000000 INFO @ Sat, 03 Apr 2021 12:03:06: 27000000 INFO @ Sat, 03 Apr 2021 12:03:08: 32000000 INFO @ Sat, 03 Apr 2021 12:03:08: 31000000 INFO @ Sat, 03 Apr 2021 12:03:17: 28000000 INFO @ Sat, 03 Apr 2021 12:03:17: 32000000 INFO @ Sat, 03 Apr 2021 12:03:18: 33000000 INFO @ Sat, 03 Apr 2021 12:03:26: 33000000 INFO @ Sat, 03 Apr 2021 12:03:28: 29000000 INFO @ Sat, 03 Apr 2021 12:03:29: 34000000 INFO @ Sat, 03 Apr 2021 12:03:36: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 12:03:38: 30000000 INFO @ Sat, 03 Apr 2021 12:03:39: 35000000 INFO @ Sat, 03 Apr 2021 12:03:45: 35000000 INFO @ Sat, 03 Apr 2021 12:03:49: 31000000 INFO @ Sat, 03 Apr 2021 12:03:50: 36000000 INFO @ Sat, 03 Apr 2021 12:03:55: 36000000 INFO @ Sat, 03 Apr 2021 12:04:00: 32000000 INFO @ Sat, 03 Apr 2021 12:04:01: 37000000 INFO @ Sat, 03 Apr 2021 12:04:05: 37000000 INFO @ Sat, 03 Apr 2021 12:04:10: 33000000 INFO @ Sat, 03 Apr 2021 12:04:12: 38000000 INFO @ Sat, 03 Apr 2021 12:04:15: 38000000 INFO @ Sat, 03 Apr 2021 12:04:21: 34000000 INFO @ Sat, 03 Apr 2021 12:04:22: 39000000 INFO @ Sat, 03 Apr 2021 12:04:24: 39000000 INFO @ Sat, 03 Apr 2021 12:04:31: 35000000 INFO @ Sat, 03 Apr 2021 12:04:33: 40000000 INFO @ Sat, 03 Apr 2021 12:04:34: 40000000 INFO @ Sat, 03 Apr 2021 12:04:42: 36000000 INFO @ Sat, 03 Apr 2021 12:04:44: 41000000 INFO @ Sat, 03 Apr 2021 12:04:44: 41000000 INFO @ Sat, 03 Apr 2021 12:04:53: 37000000 INFO @ Sat, 03 Apr 2021 12:04:55: 42000000 INFO @ Sat, 03 Apr 2021 12:04:56: 42000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 12:05:04: 38000000 INFO @ Sat, 03 Apr 2021 12:05:06: 43000000 INFO @ Sat, 03 Apr 2021 12:05:07: 43000000 INFO @ Sat, 03 Apr 2021 12:05:15: 39000000 INFO @ Sat, 03 Apr 2021 12:05:18: 44000000 INFO @ Sat, 03 Apr 2021 12:05:19: 44000000 INFO @ Sat, 03 Apr 2021 12:05:25: 40000000 INFO @ Sat, 03 Apr 2021 12:05:29: 45000000 INFO @ Sat, 03 Apr 2021 12:05:30: 45000000 INFO @ Sat, 03 Apr 2021 12:05:36: 41000000 INFO @ Sat, 03 Apr 2021 12:05:41: 46000000 INFO @ Sat, 03 Apr 2021 12:05:42: 46000000 INFO @ Sat, 03 Apr 2021 12:05:46: 42000000 INFO @ Sat, 03 Apr 2021 12:05:53: 47000000 INFO @ Sat, 03 Apr 2021 12:05:54: 47000000 INFO @ Sat, 03 Apr 2021 12:05:57: 43000000 INFO @ Sat, 03 Apr 2021 12:06:04: 48000000 INFO @ Sat, 03 Apr 2021 12:06:05: 48000000 INFO @ Sat, 03 Apr 2021 12:06:07: 44000000 INFO @ Sat, 03 Apr 2021 12:06:14: 49000000 INFO @ Sat, 03 Apr 2021 12:06:16: 49000000 INFO @ Sat, 03 Apr 2021 12:06:16: 45000000 INFO @ Sat, 03 Apr 2021 12:06:25: 50000000 INFO @ Sat, 03 Apr 2021 12:06:26: 50000000 INFO @ Sat, 03 Apr 2021 12:06:26: 46000000 INFO @ Sat, 03 Apr 2021 12:06:36: 51000000 INFO @ Sat, 03 Apr 2021 12:06:36: 47000000 INFO @ Sat, 03 Apr 2021 12:06:37: 51000000 INFO @ Sat, 03 Apr 2021 12:06:44: #1 tag size is determined as 151 bps INFO @ Sat, 03 Apr 2021 12:06:44: #1 tag size = 151 INFO @ Sat, 03 Apr 2021 12:06:44: #1 total tags in treatment: 18051900 INFO @ Sat, 03 Apr 2021 12:06:44: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 12:06:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 12:06:44: #1 tags after filtering in treatment: 14205303 INFO @ Sat, 03 Apr 2021 12:06:44: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 12:06:44: #1 finished! INFO @ Sat, 03 Apr 2021 12:06:44: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 12:06:44: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 12:06:44: #1 tag size is determined as 151 bps INFO @ Sat, 03 Apr 2021 12:06:44: #1 tag size = 151 INFO @ Sat, 03 Apr 2021 12:06:44: #1 total tags in treatment: 18051900 INFO @ Sat, 03 Apr 2021 12:06:44: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 12:06:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 12:06:44: #1 tags after filtering in treatment: 14205303 INFO @ Sat, 03 Apr 2021 12:06:44: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 12:06:44: #1 finished! INFO @ Sat, 03 Apr 2021 12:06:44: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 12:06:44: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 12:06:45: #2 number of paired peaks: 150 WARNING @ Sat, 03 Apr 2021 12:06:45: Fewer paired peaks (150) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 150 pairs to build model! INFO @ Sat, 03 Apr 2021 12:06:45: start model_add_line... INFO @ Sat, 03 Apr 2021 12:06:45: start X-correlation... INFO @ Sat, 03 Apr 2021 12:06:45: end of X-cor INFO @ Sat, 03 Apr 2021 12:06:45: #2 finished! INFO @ Sat, 03 Apr 2021 12:06:45: #2 predicted fragment length is 202 bps INFO @ Sat, 03 Apr 2021 12:06:45: #2 alternative fragment length(s) may be 4,202 bps INFO @ Sat, 03 Apr 2021 12:06:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.05_model.r WARNING @ Sat, 03 Apr 2021 12:06:45: #2 Since the d (202) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 12:06:45: #2 You may need to consider one of the other alternative d(s): 4,202 WARNING @ Sat, 03 Apr 2021 12:06:45: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 12:06:45: #3 Call peaks... INFO @ Sat, 03 Apr 2021 12:06:45: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 12:06:46: #2 number of paired peaks: 150 WARNING @ Sat, 03 Apr 2021 12:06:46: Fewer paired peaks (150) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 150 pairs to build model! INFO @ Sat, 03 Apr 2021 12:06:46: start model_add_line... INFO @ Sat, 03 Apr 2021 12:06:46: start X-correlation... INFO @ Sat, 03 Apr 2021 12:06:46: end of X-cor INFO @ Sat, 03 Apr 2021 12:06:46: #2 finished! INFO @ Sat, 03 Apr 2021 12:06:46: #2 predicted fragment length is 202 bps INFO @ Sat, 03 Apr 2021 12:06:46: #2 alternative fragment length(s) may be 4,202 bps INFO @ Sat, 03 Apr 2021 12:06:46: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.10_model.r WARNING @ Sat, 03 Apr 2021 12:06:46: #2 Since the d (202) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 12:06:46: #2 You may need to consider one of the other alternative d(s): 4,202 WARNING @ Sat, 03 Apr 2021 12:06:46: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 12:06:46: #3 Call peaks... INFO @ Sat, 03 Apr 2021 12:06:46: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 12:06:46: 48000000 INFO @ Sat, 03 Apr 2021 12:06:55: 49000000 INFO @ Sat, 03 Apr 2021 12:07:03: 50000000 INFO @ Sat, 03 Apr 2021 12:07:11: 51000000 INFO @ Sat, 03 Apr 2021 12:07:17: #1 tag size is determined as 151 bps INFO @ Sat, 03 Apr 2021 12:07:17: #1 tag size = 151 INFO @ Sat, 03 Apr 2021 12:07:17: #1 total tags in treatment: 18051900 INFO @ Sat, 03 Apr 2021 12:07:17: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 12:07:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 12:07:17: #1 tags after filtering in treatment: 14205303 INFO @ Sat, 03 Apr 2021 12:07:17: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 03 Apr 2021 12:07:17: #1 finished! INFO @ Sat, 03 Apr 2021 12:07:17: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 12:07:17: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 12:07:18: #2 number of paired peaks: 150 WARNING @ Sat, 03 Apr 2021 12:07:18: Fewer paired peaks (150) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 150 pairs to build model! INFO @ Sat, 03 Apr 2021 12:07:18: start model_add_line... INFO @ Sat, 03 Apr 2021 12:07:18: start X-correlation... INFO @ Sat, 03 Apr 2021 12:07:18: end of X-cor INFO @ Sat, 03 Apr 2021 12:07:18: #2 finished! INFO @ Sat, 03 Apr 2021 12:07:18: #2 predicted fragment length is 202 bps INFO @ Sat, 03 Apr 2021 12:07:18: #2 alternative fragment length(s) may be 4,202 bps INFO @ Sat, 03 Apr 2021 12:07:18: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.20_model.r WARNING @ Sat, 03 Apr 2021 12:07:18: #2 Since the d (202) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 12:07:18: #2 You may need to consider one of the other alternative d(s): 4,202 WARNING @ Sat, 03 Apr 2021 12:07:18: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 12:07:18: #3 Call peaks... INFO @ Sat, 03 Apr 2021 12:07:18: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 12:07:20: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 12:07:22: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 12:07:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.05_peaks.xls INFO @ Sat, 03 Apr 2021 12:07:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 12:07:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.05_summits.bed INFO @ Sat, 03 Apr 2021 12:07:39: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (5203 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 12:07:40: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.10_peaks.xls INFO @ Sat, 03 Apr 2021 12:07:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 12:07:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.10_summits.bed INFO @ Sat, 03 Apr 2021 12:07:40: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (1597 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 12:07:53: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 12:08:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.20_peaks.xls INFO @ Sat, 03 Apr 2021 12:08:11: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 12:08:11: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7572775/SRX7572775.20_summits.bed INFO @ Sat, 03 Apr 2021 12:08:11: Done! pass1 - making usageList (11 chroms): 0 millis pass2 - checking and writing primary data (394 records, 4 fields): 2 millis CompletedMACS2peakCalling