Job ID = 6498716 SRX = SRX749028 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-26T00:00:11 prefetch.2.10.7: 1) Downloading 'SRR1636756'... 2020-06-26T00:00:11 prefetch.2.10.7: Downloading via HTTPS... 2020-06-26T00:05:23 prefetch.2.10.7: HTTPS download succeed 2020-06-26T00:05:23 prefetch.2.10.7: 1) 'SRR1636756' was downloaded successfully Read 28553223 spots for SRR1636756/SRR1636756.sra Written 28553223 spots for SRR1636756/SRR1636756.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:00:57 28553223 reads; of these: 28553223 (100.00%) were paired; of these: 3339083 (11.69%) aligned concordantly 0 times 15796244 (55.32%) aligned concordantly exactly 1 time 9417896 (32.98%) aligned concordantly >1 times ---- 3339083 pairs aligned concordantly 0 times; of these: 88488 (2.65%) aligned discordantly 1 time ---- 3250595 pairs aligned 0 times concordantly or discordantly; of these: 6501190 mates make up the pairs; of these: 5361584 (82.47%) aligned 0 times 691723 (10.64%) aligned exactly 1 time 447883 (6.89%) aligned >1 times 90.61% overall alignment rate Time searching: 01:00:58 Overall time: 01:00:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3820769 / 25252131 = 0.1513 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 10:22:54: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 10:22:54: #1 read tag files... INFO @ Fri, 26 Jun 2020 10:22:54: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 10:22:59: 1000000 INFO @ Fri, 26 Jun 2020 10:23:05: 2000000 INFO @ Fri, 26 Jun 2020 10:23:11: 3000000 INFO @ Fri, 26 Jun 2020 10:23:17: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 10:23:22: 5000000 INFO @ Fri, 26 Jun 2020 10:23:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 10:23:23: #1 read tag files... INFO @ Fri, 26 Jun 2020 10:23:23: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 10:23:28: 6000000 INFO @ Fri, 26 Jun 2020 10:23:30: 1000000 INFO @ Fri, 26 Jun 2020 10:23:35: 7000000 INFO @ Fri, 26 Jun 2020 10:23:36: 2000000 INFO @ Fri, 26 Jun 2020 10:23:41: 8000000 INFO @ Fri, 26 Jun 2020 10:23:43: 3000000 INFO @ Fri, 26 Jun 2020 10:23:48: 9000000 INFO @ Fri, 26 Jun 2020 10:23:50: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 26 Jun 2020 10:23:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 26 Jun 2020 10:23:53: #1 read tag files... INFO @ Fri, 26 Jun 2020 10:23:53: #1 read treatment tags... INFO @ Fri, 26 Jun 2020 10:23:54: 10000000 INFO @ Fri, 26 Jun 2020 10:23:56: 5000000 INFO @ Fri, 26 Jun 2020 10:24:00: 1000000 INFO @ Fri, 26 Jun 2020 10:24:01: 11000000 INFO @ Fri, 26 Jun 2020 10:24:03: 6000000 INFO @ Fri, 26 Jun 2020 10:24:07: 2000000 INFO @ Fri, 26 Jun 2020 10:24:07: 12000000 INFO @ Fri, 26 Jun 2020 10:24:09: 7000000 INFO @ Fri, 26 Jun 2020 10:24:13: 3000000 INFO @ Fri, 26 Jun 2020 10:24:14: 13000000 INFO @ Fri, 26 Jun 2020 10:24:16: 8000000 INFO @ Fri, 26 Jun 2020 10:24:20: 4000000 INFO @ Fri, 26 Jun 2020 10:24:20: 14000000 INFO @ Fri, 26 Jun 2020 10:24:22: 9000000 INFO @ Fri, 26 Jun 2020 10:24:26: 5000000 INFO @ Fri, 26 Jun 2020 10:24:27: 15000000 INFO @ Fri, 26 Jun 2020 10:24:29: 10000000 INFO @ Fri, 26 Jun 2020 10:24:33: 6000000 INFO @ Fri, 26 Jun 2020 10:24:33: 16000000 INFO @ Fri, 26 Jun 2020 10:24:35: 11000000 INFO @ Fri, 26 Jun 2020 10:24:40: 7000000 INFO @ Fri, 26 Jun 2020 10:24:40: 17000000 INFO @ Fri, 26 Jun 2020 10:24:42: 12000000 INFO @ Fri, 26 Jun 2020 10:24:46: 8000000 INFO @ Fri, 26 Jun 2020 10:24:46: 18000000 INFO @ Fri, 26 Jun 2020 10:24:49: 13000000 INFO @ Fri, 26 Jun 2020 10:24:53: 9000000 INFO @ Fri, 26 Jun 2020 10:24:53: 19000000 INFO @ Fri, 26 Jun 2020 10:24:55: 14000000 INFO @ Fri, 26 Jun 2020 10:24:59: 10000000 INFO @ Fri, 26 Jun 2020 10:24:59: 20000000 INFO @ Fri, 26 Jun 2020 10:25:02: 15000000 INFO @ Fri, 26 Jun 2020 10:25:06: 11000000 INFO @ Fri, 26 Jun 2020 10:25:06: 21000000 INFO @ Fri, 26 Jun 2020 10:25:08: 16000000 INFO @ Fri, 26 Jun 2020 10:25:13: 22000000 INFO @ Fri, 26 Jun 2020 10:25:13: 12000000 INFO @ Fri, 26 Jun 2020 10:25:15: 17000000 INFO @ Fri, 26 Jun 2020 10:25:19: 23000000 INFO @ Fri, 26 Jun 2020 10:25:19: 13000000 INFO @ Fri, 26 Jun 2020 10:25:21: 18000000 INFO @ Fri, 26 Jun 2020 10:25:26: 14000000 INFO @ Fri, 26 Jun 2020 10:25:26: 24000000 INFO @ Fri, 26 Jun 2020 10:25:28: 19000000 INFO @ Fri, 26 Jun 2020 10:25:32: 15000000 INFO @ Fri, 26 Jun 2020 10:25:32: 25000000 INFO @ Fri, 26 Jun 2020 10:25:34: 20000000 INFO @ Fri, 26 Jun 2020 10:25:39: 16000000 INFO @ Fri, 26 Jun 2020 10:25:39: 26000000 INFO @ Fri, 26 Jun 2020 10:25:41: 21000000 INFO @ Fri, 26 Jun 2020 10:25:45: 17000000 INFO @ Fri, 26 Jun 2020 10:25:46: 27000000 INFO @ Fri, 26 Jun 2020 10:25:47: 22000000 INFO @ Fri, 26 Jun 2020 10:25:52: 18000000 INFO @ Fri, 26 Jun 2020 10:25:52: 28000000 INFO @ Fri, 26 Jun 2020 10:25:54: 23000000 INFO @ Fri, 26 Jun 2020 10:25:59: 19000000 INFO @ Fri, 26 Jun 2020 10:25:59: 29000000 INFO @ Fri, 26 Jun 2020 10:26:01: 24000000 INFO @ Fri, 26 Jun 2020 10:26:05: 20000000 INFO @ Fri, 26 Jun 2020 10:26:05: 30000000 INFO @ Fri, 26 Jun 2020 10:26:07: 25000000 INFO @ Fri, 26 Jun 2020 10:26:12: 21000000 INFO @ Fri, 26 Jun 2020 10:26:12: 31000000 INFO @ Fri, 26 Jun 2020 10:26:14: 26000000 INFO @ Fri, 26 Jun 2020 10:26:18: 22000000 INFO @ Fri, 26 Jun 2020 10:26:18: 32000000 INFO @ Fri, 26 Jun 2020 10:26:20: 27000000 INFO @ Fri, 26 Jun 2020 10:26:25: 33000000 INFO @ Fri, 26 Jun 2020 10:26:25: 23000000 INFO @ Fri, 26 Jun 2020 10:26:27: 28000000 INFO @ Fri, 26 Jun 2020 10:26:31: 34000000 INFO @ Fri, 26 Jun 2020 10:26:32: 24000000 INFO @ Fri, 26 Jun 2020 10:26:33: 29000000 INFO @ Fri, 26 Jun 2020 10:26:38: 35000000 INFO @ Fri, 26 Jun 2020 10:26:38: 25000000 INFO @ Fri, 26 Jun 2020 10:26:40: 30000000 INFO @ Fri, 26 Jun 2020 10:26:45: 36000000 INFO @ Fri, 26 Jun 2020 10:26:45: 26000000 INFO @ Fri, 26 Jun 2020 10:26:46: 31000000 INFO @ Fri, 26 Jun 2020 10:26:51: 37000000 INFO @ Fri, 26 Jun 2020 10:26:51: 27000000 INFO @ Fri, 26 Jun 2020 10:26:53: 32000000 INFO @ Fri, 26 Jun 2020 10:26:58: 38000000 INFO @ Fri, 26 Jun 2020 10:26:58: 28000000 INFO @ Fri, 26 Jun 2020 10:26:59: 33000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 26 Jun 2020 10:27:04: 39000000 INFO @ Fri, 26 Jun 2020 10:27:05: 29000000 INFO @ Fri, 26 Jun 2020 10:27:06: 34000000 INFO @ Fri, 26 Jun 2020 10:27:11: 40000000 INFO @ Fri, 26 Jun 2020 10:27:12: 30000000 INFO @ Fri, 26 Jun 2020 10:27:13: 35000000 INFO @ Fri, 26 Jun 2020 10:27:18: 41000000 INFO @ Fri, 26 Jun 2020 10:27:19: 31000000 INFO @ Fri, 26 Jun 2020 10:27:20: 36000000 INFO @ Fri, 26 Jun 2020 10:27:25: 42000000 INFO @ Fri, 26 Jun 2020 10:27:26: 32000000 INFO @ Fri, 26 Jun 2020 10:27:27: 37000000 INFO @ Fri, 26 Jun 2020 10:27:31: 43000000 INFO @ Fri, 26 Jun 2020 10:27:32: 33000000 INFO @ Fri, 26 Jun 2020 10:27:34: 38000000 INFO @ Fri, 26 Jun 2020 10:27:38: 44000000 INFO @ Fri, 26 Jun 2020 10:27:39: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 10:27:39: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 10:27:39: #1 total tags in treatment: 21396246 INFO @ Fri, 26 Jun 2020 10:27:39: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 10:27:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 10:27:39: 34000000 INFO @ Fri, 26 Jun 2020 10:27:39: #1 tags after filtering in treatment: 19273652 INFO @ Fri, 26 Jun 2020 10:27:39: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 10:27:39: #1 finished! INFO @ Fri, 26 Jun 2020 10:27:39: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 10:27:39: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 10:27:40: 39000000 INFO @ Fri, 26 Jun 2020 10:27:41: #2 number of paired peaks: 517 WARNING @ Fri, 26 Jun 2020 10:27:41: Fewer paired peaks (517) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 517 pairs to build model! INFO @ Fri, 26 Jun 2020 10:27:41: start model_add_line... INFO @ Fri, 26 Jun 2020 10:27:41: start X-correlation... INFO @ Fri, 26 Jun 2020 10:27:41: end of X-cor INFO @ Fri, 26 Jun 2020 10:27:41: #2 finished! INFO @ Fri, 26 Jun 2020 10:27:41: #2 predicted fragment length is 124 bps INFO @ Fri, 26 Jun 2020 10:27:41: #2 alternative fragment length(s) may be 124 bps INFO @ Fri, 26 Jun 2020 10:27:41: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.05_model.r INFO @ Fri, 26 Jun 2020 10:27:41: #3 Call peaks... INFO @ Fri, 26 Jun 2020 10:27:41: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 10:27:46: 35000000 INFO @ Fri, 26 Jun 2020 10:27:47: 40000000 INFO @ Fri, 26 Jun 2020 10:27:53: 36000000 INFO @ Fri, 26 Jun 2020 10:27:54: 41000000 INFO @ Fri, 26 Jun 2020 10:28:00: 37000000 INFO @ Fri, 26 Jun 2020 10:28:01: 42000000 INFO @ Fri, 26 Jun 2020 10:28:06: 38000000 INFO @ Fri, 26 Jun 2020 10:28:07: 43000000 INFO @ Fri, 26 Jun 2020 10:28:13: 39000000 INFO @ Fri, 26 Jun 2020 10:28:14: 44000000 INFO @ Fri, 26 Jun 2020 10:28:15: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 10:28:15: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 10:28:15: #1 total tags in treatment: 21396246 INFO @ Fri, 26 Jun 2020 10:28:15: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 10:28:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 10:28:15: #1 tags after filtering in treatment: 19273652 INFO @ Fri, 26 Jun 2020 10:28:15: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 10:28:15: #1 finished! INFO @ Fri, 26 Jun 2020 10:28:15: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 10:28:15: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 10:28:16: #2 number of paired peaks: 517 WARNING @ Fri, 26 Jun 2020 10:28:16: Fewer paired peaks (517) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 517 pairs to build model! INFO @ Fri, 26 Jun 2020 10:28:16: start model_add_line... INFO @ Fri, 26 Jun 2020 10:28:16: start X-correlation... INFO @ Fri, 26 Jun 2020 10:28:16: end of X-cor INFO @ Fri, 26 Jun 2020 10:28:16: #2 finished! INFO @ Fri, 26 Jun 2020 10:28:16: #2 predicted fragment length is 124 bps INFO @ Fri, 26 Jun 2020 10:28:16: #2 alternative fragment length(s) may be 124 bps INFO @ Fri, 26 Jun 2020 10:28:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.10_model.r INFO @ Fri, 26 Jun 2020 10:28:16: #3 Call peaks... INFO @ Fri, 26 Jun 2020 10:28:16: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 10:28:19: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 10:28:19: 40000000 BigWig に変換しました。 INFO @ Fri, 26 Jun 2020 10:28:25: 41000000 INFO @ Fri, 26 Jun 2020 10:28:31: 42000000 INFO @ Fri, 26 Jun 2020 10:28:37: 43000000 INFO @ Fri, 26 Jun 2020 10:28:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.05_peaks.xls INFO @ Fri, 26 Jun 2020 10:28:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.05_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 10:28:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.05_summits.bed INFO @ Fri, 26 Jun 2020 10:28:37: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (6725 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 10:28:42: 44000000 INFO @ Fri, 26 Jun 2020 10:28:43: #1 tag size is determined as 50 bps INFO @ Fri, 26 Jun 2020 10:28:43: #1 tag size = 50 INFO @ Fri, 26 Jun 2020 10:28:43: #1 total tags in treatment: 21396246 INFO @ Fri, 26 Jun 2020 10:28:43: #1 user defined the maximum tags... INFO @ Fri, 26 Jun 2020 10:28:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 26 Jun 2020 10:28:44: #1 tags after filtering in treatment: 19273652 INFO @ Fri, 26 Jun 2020 10:28:44: #1 Redundant rate of treatment: 0.10 INFO @ Fri, 26 Jun 2020 10:28:44: #1 finished! INFO @ Fri, 26 Jun 2020 10:28:44: #2 Build Peak Model... INFO @ Fri, 26 Jun 2020 10:28:44: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 26 Jun 2020 10:28:45: #2 number of paired peaks: 517 WARNING @ Fri, 26 Jun 2020 10:28:45: Fewer paired peaks (517) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 517 pairs to build model! INFO @ Fri, 26 Jun 2020 10:28:45: start model_add_line... INFO @ Fri, 26 Jun 2020 10:28:45: start X-correlation... INFO @ Fri, 26 Jun 2020 10:28:45: end of X-cor INFO @ Fri, 26 Jun 2020 10:28:45: #2 finished! INFO @ Fri, 26 Jun 2020 10:28:45: #2 predicted fragment length is 124 bps INFO @ Fri, 26 Jun 2020 10:28:45: #2 alternative fragment length(s) may be 124 bps INFO @ Fri, 26 Jun 2020 10:28:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.20_model.r INFO @ Fri, 26 Jun 2020 10:28:45: #3 Call peaks... INFO @ Fri, 26 Jun 2020 10:28:45: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 26 Jun 2020 10:28:55: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 10:29:13: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.10_peaks.xls INFO @ Fri, 26 Jun 2020 10:29:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.10_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 10:29:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.10_summits.bed INFO @ Fri, 26 Jun 2020 10:29:13: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3688 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Fri, 26 Jun 2020 10:29:22: #3 Call peaks for each chromosome... INFO @ Fri, 26 Jun 2020 10:29:39: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.20_peaks.xls INFO @ Fri, 26 Jun 2020 10:29:39: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.20_peaks.narrowPeak INFO @ Fri, 26 Jun 2020 10:29:39: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX749028/SRX749028.20_summits.bed INFO @ Fri, 26 Jun 2020 10:29:39: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1478 records, 4 fields): 3 millis CompletedMACS2peakCalling