Job ID = 12265475 SRX = SRX7192196 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 14288230 spots for SRR10503241/SRR10503241.sra Written 14288230 spots for SRR10503241/SRR10503241.sra Read 14036711 spots for SRR10503242/SRR10503242.sra Written 14036711 spots for SRR10503242/SRR10503242.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265783 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:45:41 28324941 reads; of these: 28324941 (100.00%) were paired; of these: 3173919 (11.21%) aligned concordantly 0 times 21309761 (75.23%) aligned concordantly exactly 1 time 3841261 (13.56%) aligned concordantly >1 times ---- 3173919 pairs aligned concordantly 0 times; of these: 1083900 (34.15%) aligned discordantly 1 time ---- 2090019 pairs aligned 0 times concordantly or discordantly; of these: 4180038 mates make up the pairs; of these: 2948396 (70.54%) aligned 0 times 837992 (20.05%) aligned exactly 1 time 393650 (9.42%) aligned >1 times 94.80% overall alignment rate Time searching: 00:45:42 Overall time: 00:45:42 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2006754 / 26122545 = 0.0768 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:19:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:19:07: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:19:07: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:19:13: 1000000 INFO @ Sat, 03 Apr 2021 08:19:18: 2000000 INFO @ Sat, 03 Apr 2021 08:19:23: 3000000 INFO @ Sat, 03 Apr 2021 08:19:29: 4000000 INFO @ Sat, 03 Apr 2021 08:19:34: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:19:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:19:38: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:19:38: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:19:40: 6000000 INFO @ Sat, 03 Apr 2021 08:19:44: 1000000 INFO @ Sat, 03 Apr 2021 08:19:45: 7000000 INFO @ Sat, 03 Apr 2021 08:19:50: 2000000 INFO @ Sat, 03 Apr 2021 08:19:50: 8000000 INFO @ Sat, 03 Apr 2021 08:19:55: 3000000 INFO @ Sat, 03 Apr 2021 08:19:56: 9000000 INFO @ Sat, 03 Apr 2021 08:20:01: 10000000 INFO @ Sat, 03 Apr 2021 08:20:01: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:20:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:20:07: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:20:07: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:20:07: 11000000 INFO @ Sat, 03 Apr 2021 08:20:07: 5000000 INFO @ Sat, 03 Apr 2021 08:20:12: 12000000 INFO @ Sat, 03 Apr 2021 08:20:13: 1000000 INFO @ Sat, 03 Apr 2021 08:20:14: 6000000 INFO @ Sat, 03 Apr 2021 08:20:18: 13000000 INFO @ Sat, 03 Apr 2021 08:20:20: 2000000 INFO @ Sat, 03 Apr 2021 08:20:20: 7000000 INFO @ Sat, 03 Apr 2021 08:20:23: 14000000 INFO @ Sat, 03 Apr 2021 08:20:26: 3000000 INFO @ Sat, 03 Apr 2021 08:20:27: 8000000 INFO @ Sat, 03 Apr 2021 08:20:29: 15000000 INFO @ Sat, 03 Apr 2021 08:20:33: 9000000 INFO @ Sat, 03 Apr 2021 08:20:33: 4000000 INFO @ Sat, 03 Apr 2021 08:20:34: 16000000 INFO @ Sat, 03 Apr 2021 08:20:39: 10000000 INFO @ Sat, 03 Apr 2021 08:20:40: 5000000 INFO @ Sat, 03 Apr 2021 08:20:40: 17000000 INFO @ Sat, 03 Apr 2021 08:20:46: 11000000 INFO @ Sat, 03 Apr 2021 08:20:46: 18000000 INFO @ Sat, 03 Apr 2021 08:20:46: 6000000 INFO @ Sat, 03 Apr 2021 08:20:51: 19000000 INFO @ Sat, 03 Apr 2021 08:20:52: 12000000 INFO @ Sat, 03 Apr 2021 08:20:53: 7000000 INFO @ Sat, 03 Apr 2021 08:20:57: 20000000 INFO @ Sat, 03 Apr 2021 08:20:59: 13000000 INFO @ Sat, 03 Apr 2021 08:20:59: 8000000 INFO @ Sat, 03 Apr 2021 08:21:02: 21000000 INFO @ Sat, 03 Apr 2021 08:21:05: 14000000 INFO @ Sat, 03 Apr 2021 08:21:05: 9000000 INFO @ Sat, 03 Apr 2021 08:21:08: 22000000 INFO @ Sat, 03 Apr 2021 08:21:12: 10000000 INFO @ Sat, 03 Apr 2021 08:21:12: 15000000 INFO @ Sat, 03 Apr 2021 08:21:13: 23000000 INFO @ Sat, 03 Apr 2021 08:21:18: 24000000 INFO @ Sat, 03 Apr 2021 08:21:18: 11000000 INFO @ Sat, 03 Apr 2021 08:21:19: 16000000 INFO @ Sat, 03 Apr 2021 08:21:23: 25000000 INFO @ Sat, 03 Apr 2021 08:21:25: 12000000 INFO @ Sat, 03 Apr 2021 08:21:25: 17000000 INFO @ Sat, 03 Apr 2021 08:21:29: 26000000 INFO @ Sat, 03 Apr 2021 08:21:31: 13000000 INFO @ Sat, 03 Apr 2021 08:21:32: 18000000 INFO @ Sat, 03 Apr 2021 08:21:34: 27000000 INFO @ Sat, 03 Apr 2021 08:21:38: 14000000 INFO @ Sat, 03 Apr 2021 08:21:39: 19000000 INFO @ Sat, 03 Apr 2021 08:21:40: 28000000 INFO @ Sat, 03 Apr 2021 08:21:45: 15000000 INFO @ Sat, 03 Apr 2021 08:21:45: 20000000 INFO @ Sat, 03 Apr 2021 08:21:46: 29000000 INFO @ Sat, 03 Apr 2021 08:21:52: 30000000 INFO @ Sat, 03 Apr 2021 08:21:52: 16000000 INFO @ Sat, 03 Apr 2021 08:21:52: 21000000 INFO @ Sat, 03 Apr 2021 08:21:57: 31000000 INFO @ Sat, 03 Apr 2021 08:21:59: 17000000 INFO @ Sat, 03 Apr 2021 08:21:59: 22000000 INFO @ Sat, 03 Apr 2021 08:22:02: 32000000 INFO @ Sat, 03 Apr 2021 08:22:06: 23000000 INFO @ Sat, 03 Apr 2021 08:22:06: 18000000 INFO @ Sat, 03 Apr 2021 08:22:08: 33000000 INFO @ Sat, 03 Apr 2021 08:22:13: 24000000 INFO @ Sat, 03 Apr 2021 08:22:14: 19000000 INFO @ Sat, 03 Apr 2021 08:22:14: 34000000 INFO @ Sat, 03 Apr 2021 08:22:20: 25000000 INFO @ Sat, 03 Apr 2021 08:22:21: 35000000 INFO @ Sat, 03 Apr 2021 08:22:21: 20000000 INFO @ Sat, 03 Apr 2021 08:22:27: 36000000 INFO @ Sat, 03 Apr 2021 08:22:28: 26000000 INFO @ Sat, 03 Apr 2021 08:22:28: 21000000 INFO @ Sat, 03 Apr 2021 08:22:34: 37000000 INFO @ Sat, 03 Apr 2021 08:22:35: 22000000 INFO @ Sat, 03 Apr 2021 08:22:35: 27000000 INFO @ Sat, 03 Apr 2021 08:22:40: 38000000 INFO @ Sat, 03 Apr 2021 08:22:42: 23000000 INFO @ Sat, 03 Apr 2021 08:22:43: 28000000 INFO @ Sat, 03 Apr 2021 08:22:47: 39000000 INFO @ Sat, 03 Apr 2021 08:22:49: 24000000 INFO @ Sat, 03 Apr 2021 08:22:51: 29000000 INFO @ Sat, 03 Apr 2021 08:22:54: 40000000 INFO @ Sat, 03 Apr 2021 08:22:57: 25000000 INFO @ Sat, 03 Apr 2021 08:22:58: 30000000 INFO @ Sat, 03 Apr 2021 08:23:01: 41000000 INFO @ Sat, 03 Apr 2021 08:23:05: 26000000 INFO @ Sat, 03 Apr 2021 08:23:06: 31000000 INFO @ Sat, 03 Apr 2021 08:23:08: 42000000 INFO @ Sat, 03 Apr 2021 08:23:12: 27000000 INFO @ Sat, 03 Apr 2021 08:23:14: 32000000 INFO @ Sat, 03 Apr 2021 08:23:15: 43000000 INFO @ Sat, 03 Apr 2021 08:23:20: 28000000 INFO @ Sat, 03 Apr 2021 08:23:22: 33000000 INFO @ Sat, 03 Apr 2021 08:23:22: 44000000 INFO @ Sat, 03 Apr 2021 08:23:28: 29000000 INFO @ Sat, 03 Apr 2021 08:23:29: 45000000 INFO @ Sat, 03 Apr 2021 08:23:30: 34000000 INFO @ Sat, 03 Apr 2021 08:23:36: 30000000 INFO @ Sat, 03 Apr 2021 08:23:37: 46000000 INFO @ Sat, 03 Apr 2021 08:23:38: 35000000 INFO @ Sat, 03 Apr 2021 08:23:44: 31000000 INFO @ Sat, 03 Apr 2021 08:23:44: 47000000 INFO @ Sat, 03 Apr 2021 08:23:46: 36000000 INFO @ Sat, 03 Apr 2021 08:23:51: 48000000 INFO @ Sat, 03 Apr 2021 08:23:51: 32000000 INFO @ Sat, 03 Apr 2021 08:23:53: 37000000 INFO @ Sat, 03 Apr 2021 08:23:58: 49000000 INFO @ Sat, 03 Apr 2021 08:24:00: 33000000 INFO @ Sat, 03 Apr 2021 08:24:01: 38000000 INFO @ Sat, 03 Apr 2021 08:24:03: #1 tag size is determined as 51 bps INFO @ Sat, 03 Apr 2021 08:24:03: #1 tag size = 51 INFO @ Sat, 03 Apr 2021 08:24:03: #1 total tags in treatment: 23185547 INFO @ Sat, 03 Apr 2021 08:24:03: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:24:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:24:04: #1 tags after filtering in treatment: 17015212 INFO @ Sat, 03 Apr 2021 08:24:04: #1 Redundant rate of treatment: 0.27 INFO @ Sat, 03 Apr 2021 08:24:04: #1 finished! INFO @ Sat, 03 Apr 2021 08:24:04: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:24:04: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:24:05: #2 number of paired peaks: 251 WARNING @ Sat, 03 Apr 2021 08:24:05: Fewer paired peaks (251) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 251 pairs to build model! INFO @ Sat, 03 Apr 2021 08:24:05: start model_add_line... INFO @ Sat, 03 Apr 2021 08:24:05: start X-correlation... INFO @ Sat, 03 Apr 2021 08:24:05: end of X-cor INFO @ Sat, 03 Apr 2021 08:24:05: #2 finished! INFO @ Sat, 03 Apr 2021 08:24:05: #2 predicted fragment length is 72 bps INFO @ Sat, 03 Apr 2021 08:24:05: #2 alternative fragment length(s) may be 72,590 bps INFO @ Sat, 03 Apr 2021 08:24:05: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.05_model.r WARNING @ Sat, 03 Apr 2021 08:24:05: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:24:05: #2 You may need to consider one of the other alternative d(s): 72,590 WARNING @ Sat, 03 Apr 2021 08:24:05: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:24:05: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:24:05: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:24:07: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:24:08: 39000000 INFO @ Sat, 03 Apr 2021 08:24:15: 35000000 INFO @ Sat, 03 Apr 2021 08:24:15: 40000000 INFO @ Sat, 03 Apr 2021 08:24:22: 36000000 INFO @ Sat, 03 Apr 2021 08:24:23: 41000000 INFO @ Sat, 03 Apr 2021 08:24:29: 37000000 INFO @ Sat, 03 Apr 2021 08:24:30: 42000000 INFO @ Sat, 03 Apr 2021 08:24:37: 38000000 INFO @ Sat, 03 Apr 2021 08:24:37: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:24:37: 43000000 INFO @ Sat, 03 Apr 2021 08:24:44: 39000000 INFO @ Sat, 03 Apr 2021 08:24:45: 44000000 INFO @ Sat, 03 Apr 2021 08:24:52: 40000000 INFO @ Sat, 03 Apr 2021 08:24:52: 45000000 INFO @ Sat, 03 Apr 2021 08:24:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:24:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:24:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.05_summits.bed INFO @ Sat, 03 Apr 2021 08:24:55: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (12701 records, 4 fields): 23 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:24:59: 41000000 INFO @ Sat, 03 Apr 2021 08:25:00: 46000000 INFO @ Sat, 03 Apr 2021 08:25:06: 42000000 INFO @ Sat, 03 Apr 2021 08:25:07: 47000000 INFO @ Sat, 03 Apr 2021 08:25:13: 43000000 INFO @ Sat, 03 Apr 2021 08:25:14: 48000000 INFO @ Sat, 03 Apr 2021 08:25:21: 44000000 INFO @ Sat, 03 Apr 2021 08:25:22: 49000000 INFO @ Sat, 03 Apr 2021 08:25:27: #1 tag size is determined as 51 bps INFO @ Sat, 03 Apr 2021 08:25:27: #1 tag size = 51 INFO @ Sat, 03 Apr 2021 08:25:27: #1 total tags in treatment: 23185547 INFO @ Sat, 03 Apr 2021 08:25:27: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:25:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:25:27: #1 tags after filtering in treatment: 17015212 INFO @ Sat, 03 Apr 2021 08:25:27: #1 Redundant rate of treatment: 0.27 INFO @ Sat, 03 Apr 2021 08:25:27: #1 finished! INFO @ Sat, 03 Apr 2021 08:25:27: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:25:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:25:28: 45000000 INFO @ Sat, 03 Apr 2021 08:25:29: #2 number of paired peaks: 251 WARNING @ Sat, 03 Apr 2021 08:25:29: Fewer paired peaks (251) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 251 pairs to build model! INFO @ Sat, 03 Apr 2021 08:25:29: start model_add_line... INFO @ Sat, 03 Apr 2021 08:25:29: start X-correlation... INFO @ Sat, 03 Apr 2021 08:25:29: end of X-cor INFO @ Sat, 03 Apr 2021 08:25:29: #2 finished! INFO @ Sat, 03 Apr 2021 08:25:29: #2 predicted fragment length is 72 bps INFO @ Sat, 03 Apr 2021 08:25:29: #2 alternative fragment length(s) may be 72,590 bps INFO @ Sat, 03 Apr 2021 08:25:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.10_model.r WARNING @ Sat, 03 Apr 2021 08:25:29: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:25:29: #2 You may need to consider one of the other alternative d(s): 72,590 WARNING @ Sat, 03 Apr 2021 08:25:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:25:29: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:25:29: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:25:35: 46000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:25:43: 47000000 INFO @ Sat, 03 Apr 2021 08:25:50: 48000000 INFO @ Sat, 03 Apr 2021 08:25:57: 49000000 INFO @ Sat, 03 Apr 2021 08:26:00: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:26:02: #1 tag size is determined as 51 bps INFO @ Sat, 03 Apr 2021 08:26:02: #1 tag size = 51 INFO @ Sat, 03 Apr 2021 08:26:02: #1 total tags in treatment: 23185547 INFO @ Sat, 03 Apr 2021 08:26:02: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:26:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:26:03: #1 tags after filtering in treatment: 17015212 INFO @ Sat, 03 Apr 2021 08:26:03: #1 Redundant rate of treatment: 0.27 INFO @ Sat, 03 Apr 2021 08:26:03: #1 finished! INFO @ Sat, 03 Apr 2021 08:26:03: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:26:03: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:26:04: #2 number of paired peaks: 251 WARNING @ Sat, 03 Apr 2021 08:26:04: Fewer paired peaks (251) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 251 pairs to build model! INFO @ Sat, 03 Apr 2021 08:26:04: start model_add_line... INFO @ Sat, 03 Apr 2021 08:26:04: start X-correlation... INFO @ Sat, 03 Apr 2021 08:26:04: end of X-cor INFO @ Sat, 03 Apr 2021 08:26:04: #2 finished! INFO @ Sat, 03 Apr 2021 08:26:04: #2 predicted fragment length is 72 bps INFO @ Sat, 03 Apr 2021 08:26:04: #2 alternative fragment length(s) may be 72,590 bps INFO @ Sat, 03 Apr 2021 08:26:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.20_model.r WARNING @ Sat, 03 Apr 2021 08:26:04: #2 Since the d (72) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:26:04: #2 You may need to consider one of the other alternative d(s): 72,590 WARNING @ Sat, 03 Apr 2021 08:26:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:26:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:26:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:26:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:26:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:26:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.10_summits.bed INFO @ Sat, 03 Apr 2021 08:26:17: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (5925 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:26:36: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:26:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:26:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:26:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX7192196/SRX7192196.20_summits.bed INFO @ Sat, 03 Apr 2021 08:26:52: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (996 records, 4 fields): 3 millis CompletedMACS2peakCalling