Job ID = 12265388 SRX = SRX6817541 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 67934104 spots for SRR10084532/SRR10084532.sra Written 67934104 spots for SRR10084532/SRR10084532.sra fastq に変換しました。 bowtie でマッピング中... Your job 12267772 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:03:54 67934104 reads; of these: 67934104 (100.00%) were paired; of these: 39324256 (57.89%) aligned concordantly 0 times 19265698 (28.36%) aligned concordantly exactly 1 time 9344150 (13.75%) aligned concordantly >1 times ---- 39324256 pairs aligned concordantly 0 times; of these: 3993468 (10.16%) aligned discordantly 1 time ---- 35330788 pairs aligned 0 times concordantly or discordantly; of these: 70661576 mates make up the pairs; of these: 62490170 (88.44%) aligned 0 times 1137559 (1.61%) aligned exactly 1 time 7033847 (9.95%) aligned >1 times 54.01% overall alignment rate Time searching: 03:03:54 Overall time: 03:03:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 56 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 11015154 / 32218970 = 0.3419 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:46:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:46:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:46:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:46:48: 1000000 INFO @ Sat, 03 Apr 2021 10:47:00: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:47:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:47:06: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:47:06: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:47:12: 3000000 INFO @ Sat, 03 Apr 2021 10:47:20: 1000000 INFO @ Sat, 03 Apr 2021 10:47:26: 4000000 INFO @ Sat, 03 Apr 2021 10:47:34: 2000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 10:47:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 10:47:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 10:47:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 10:47:40: 5000000 INFO @ Sat, 03 Apr 2021 10:47:48: 3000000 INFO @ Sat, 03 Apr 2021 10:47:51: 1000000 INFO @ Sat, 03 Apr 2021 10:47:54: 6000000 INFO @ Sat, 03 Apr 2021 10:48:03: 4000000 INFO @ Sat, 03 Apr 2021 10:48:07: 2000000 INFO @ Sat, 03 Apr 2021 10:48:10: 7000000 INFO @ Sat, 03 Apr 2021 10:48:19: 5000000 INFO @ Sat, 03 Apr 2021 10:48:23: 3000000 INFO @ Sat, 03 Apr 2021 10:48:25: 8000000 INFO @ Sat, 03 Apr 2021 10:48:35: 6000000 INFO @ Sat, 03 Apr 2021 10:48:38: 4000000 INFO @ Sat, 03 Apr 2021 10:48:40: 9000000 INFO @ Sat, 03 Apr 2021 10:48:50: 7000000 INFO @ Sat, 03 Apr 2021 10:48:54: 5000000 INFO @ Sat, 03 Apr 2021 10:48:57: 10000000 INFO @ Sat, 03 Apr 2021 10:49:06: 8000000 INFO @ Sat, 03 Apr 2021 10:49:10: 6000000 INFO @ Sat, 03 Apr 2021 10:49:12: 11000000 INFO @ Sat, 03 Apr 2021 10:49:21: 9000000 INFO @ Sat, 03 Apr 2021 10:49:26: 7000000 INFO @ Sat, 03 Apr 2021 10:49:27: 12000000 INFO @ Sat, 03 Apr 2021 10:49:37: 10000000 INFO @ Sat, 03 Apr 2021 10:49:41: 8000000 INFO @ Sat, 03 Apr 2021 10:49:43: 13000000 INFO @ Sat, 03 Apr 2021 10:49:53: 11000000 INFO @ Sat, 03 Apr 2021 10:49:57: 9000000 INFO @ Sat, 03 Apr 2021 10:49:59: 14000000 INFO @ Sat, 03 Apr 2021 10:50:08: 12000000 INFO @ Sat, 03 Apr 2021 10:50:13: 10000000 INFO @ Sat, 03 Apr 2021 10:50:15: 15000000 INFO @ Sat, 03 Apr 2021 10:50:24: 13000000 INFO @ Sat, 03 Apr 2021 10:50:29: 11000000 INFO @ Sat, 03 Apr 2021 10:50:31: 16000000 INFO @ Sat, 03 Apr 2021 10:50:40: 14000000 INFO @ Sat, 03 Apr 2021 10:50:45: 12000000 INFO @ Sat, 03 Apr 2021 10:50:47: 17000000 INFO @ Sat, 03 Apr 2021 10:50:57: 15000000 INFO @ Sat, 03 Apr 2021 10:51:01: 13000000 INFO @ Sat, 03 Apr 2021 10:51:03: 18000000 INFO @ Sat, 03 Apr 2021 10:51:13: 16000000 INFO @ Sat, 03 Apr 2021 10:51:19: 14000000 INFO @ Sat, 03 Apr 2021 10:51:20: 19000000 INFO @ Sat, 03 Apr 2021 10:51:32: 17000000 INFO @ Sat, 03 Apr 2021 10:51:39: 15000000 INFO @ Sat, 03 Apr 2021 10:51:40: 20000000 INFO @ Sat, 03 Apr 2021 10:51:52: 18000000 INFO @ Sat, 03 Apr 2021 10:51:59: 16000000 INFO @ Sat, 03 Apr 2021 10:52:01: 21000000 INFO @ Sat, 03 Apr 2021 10:52:12: 19000000 INFO @ Sat, 03 Apr 2021 10:52:18: 17000000 INFO @ Sat, 03 Apr 2021 10:52:20: 22000000 INFO @ Sat, 03 Apr 2021 10:52:32: 20000000 INFO @ Sat, 03 Apr 2021 10:52:37: 18000000 INFO @ Sat, 03 Apr 2021 10:52:38: 23000000 INFO @ Sat, 03 Apr 2021 10:52:50: 21000000 INFO @ Sat, 03 Apr 2021 10:52:56: 24000000 INFO @ Sat, 03 Apr 2021 10:52:57: 19000000 INFO @ Sat, 03 Apr 2021 10:53:08: 22000000 INFO @ Sat, 03 Apr 2021 10:53:15: 20000000 INFO @ Sat, 03 Apr 2021 10:53:18: 25000000 INFO @ Sat, 03 Apr 2021 10:53:25: 23000000 INFO @ Sat, 03 Apr 2021 10:53:32: 21000000 INFO @ Sat, 03 Apr 2021 10:53:42: 24000000 INFO @ Sat, 03 Apr 2021 10:53:42: 26000000 INFO @ Sat, 03 Apr 2021 10:53:49: 22000000 INFO @ Sat, 03 Apr 2021 10:53:59: 25000000 INFO @ Sat, 03 Apr 2021 10:53:59: 27000000 INFO @ Sat, 03 Apr 2021 10:54:06: 23000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 10:54:15: 26000000 INFO @ Sat, 03 Apr 2021 10:54:15: 28000000 INFO @ Sat, 03 Apr 2021 10:54:22: 24000000 INFO @ Sat, 03 Apr 2021 10:54:32: 27000000 INFO @ Sat, 03 Apr 2021 10:54:32: 29000000 INFO @ Sat, 03 Apr 2021 10:54:38: 25000000 INFO @ Sat, 03 Apr 2021 10:54:47: 28000000 INFO @ Sat, 03 Apr 2021 10:54:47: 30000000 INFO @ Sat, 03 Apr 2021 10:54:53: 26000000 INFO @ Sat, 03 Apr 2021 10:55:03: 31000000 INFO @ Sat, 03 Apr 2021 10:55:03: 29000000 INFO @ Sat, 03 Apr 2021 10:55:08: 27000000 INFO @ Sat, 03 Apr 2021 10:55:19: 32000000 INFO @ Sat, 03 Apr 2021 10:55:19: 30000000 INFO @ Sat, 03 Apr 2021 10:55:24: 28000000 INFO @ Sat, 03 Apr 2021 10:55:35: 33000000 INFO @ Sat, 03 Apr 2021 10:55:35: 31000000 INFO @ Sat, 03 Apr 2021 10:55:41: 29000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 10:55:51: 34000000 INFO @ Sat, 03 Apr 2021 10:55:51: 32000000 INFO @ Sat, 03 Apr 2021 10:55:56: 30000000 INFO @ Sat, 03 Apr 2021 10:56:05: 35000000 INFO @ Sat, 03 Apr 2021 10:56:06: 33000000 INFO @ Sat, 03 Apr 2021 10:56:12: 31000000 INFO @ Sat, 03 Apr 2021 10:56:20: 36000000 INFO @ Sat, 03 Apr 2021 10:56:21: 34000000 INFO @ Sat, 03 Apr 2021 10:56:27: 32000000 INFO @ Sat, 03 Apr 2021 10:56:36: 37000000 INFO @ Sat, 03 Apr 2021 10:56:37: 35000000 INFO @ Sat, 03 Apr 2021 10:56:42: 33000000 INFO @ Sat, 03 Apr 2021 10:56:52: 38000000 INFO @ Sat, 03 Apr 2021 10:56:52: 36000000 INFO @ Sat, 03 Apr 2021 10:56:58: 34000000 INFO @ Sat, 03 Apr 2021 10:57:07: 39000000 INFO @ Sat, 03 Apr 2021 10:57:08: 37000000 INFO @ Sat, 03 Apr 2021 10:57:13: 35000000 INFO @ Sat, 03 Apr 2021 10:57:23: 40000000 INFO @ Sat, 03 Apr 2021 10:57:23: 38000000 INFO @ Sat, 03 Apr 2021 10:57:29: 36000000 INFO @ Sat, 03 Apr 2021 10:57:39: 41000000 INFO @ Sat, 03 Apr 2021 10:57:39: 39000000 INFO @ Sat, 03 Apr 2021 10:57:45: 37000000 INFO @ Sat, 03 Apr 2021 10:57:53: 40000000 INFO @ Sat, 03 Apr 2021 10:57:54: 42000000 INFO @ Sat, 03 Apr 2021 10:57:59: 38000000 INFO @ Sat, 03 Apr 2021 10:58:06: 41000000 INFO @ Sat, 03 Apr 2021 10:58:09: 43000000 INFO @ Sat, 03 Apr 2021 10:58:14: 39000000 INFO @ Sat, 03 Apr 2021 10:58:21: 42000000 INFO @ Sat, 03 Apr 2021 10:58:23: 44000000 INFO @ Sat, 03 Apr 2021 10:58:27: 40000000 INFO @ Sat, 03 Apr 2021 10:58:34: 43000000 INFO @ Sat, 03 Apr 2021 10:58:37: 45000000 INFO @ Sat, 03 Apr 2021 10:58:41: 41000000 INFO @ Sat, 03 Apr 2021 10:58:49: 44000000 INFO @ Sat, 03 Apr 2021 10:58:52: 46000000 INFO @ Sat, 03 Apr 2021 10:58:55: 42000000 INFO @ Sat, 03 Apr 2021 10:59:03: 45000000 INFO @ Sat, 03 Apr 2021 10:59:07: 47000000 INFO @ Sat, 03 Apr 2021 10:59:09: 43000000 INFO @ Sat, 03 Apr 2021 10:59:16: 46000000 INFO @ Sat, 03 Apr 2021 10:59:21: 48000000 INFO @ Sat, 03 Apr 2021 10:59:23: 44000000 INFO @ Sat, 03 Apr 2021 10:59:31: 47000000 INFO @ Sat, 03 Apr 2021 10:59:35: 49000000 INFO @ Sat, 03 Apr 2021 10:59:38: 45000000 INFO @ Sat, 03 Apr 2021 10:59:45: 48000000 INFO @ Sat, 03 Apr 2021 10:59:49: 50000000 INFO @ Sat, 03 Apr 2021 10:59:52: 46000000 INFO @ Sat, 03 Apr 2021 10:59:59: 49000000 INFO @ Sat, 03 Apr 2021 11:00:04: 51000000 INFO @ Sat, 03 Apr 2021 11:00:07: 47000000 INFO @ Sat, 03 Apr 2021 11:00:09: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 11:00:09: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 11:00:09: #1 total tags in treatment: 18694938 INFO @ Sat, 03 Apr 2021 11:00:09: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:00:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:00:10: #1 tags after filtering in treatment: 14626574 INFO @ Sat, 03 Apr 2021 11:00:10: #1 Redundant rate of treatment: 0.22 INFO @ Sat, 03 Apr 2021 11:00:10: #1 finished! INFO @ Sat, 03 Apr 2021 11:00:10: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:00:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:00:11: #2 number of paired peaks: 178 WARNING @ Sat, 03 Apr 2021 11:00:11: Fewer paired peaks (178) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 178 pairs to build model! INFO @ Sat, 03 Apr 2021 11:00:11: start model_add_line... INFO @ Sat, 03 Apr 2021 11:00:11: start X-correlation... INFO @ Sat, 03 Apr 2021 11:00:11: end of X-cor INFO @ Sat, 03 Apr 2021 11:00:11: #2 finished! INFO @ Sat, 03 Apr 2021 11:00:11: #2 predicted fragment length is 154 bps INFO @ Sat, 03 Apr 2021 11:00:11: #2 alternative fragment length(s) may be 154 bps INFO @ Sat, 03 Apr 2021 11:00:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.05_model.r WARNING @ Sat, 03 Apr 2021 11:00:11: #2 Since the d (154) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:00:11: #2 You may need to consider one of the other alternative d(s): 154 WARNING @ Sat, 03 Apr 2021 11:00:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:00:11: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:00:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:00:13: 50000000 INFO @ Sat, 03 Apr 2021 11:00:20: 48000000 INFO @ Sat, 03 Apr 2021 11:00:25: 51000000 INFO @ Sat, 03 Apr 2021 11:00:30: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 11:00:30: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 11:00:30: #1 total tags in treatment: 18694938 INFO @ Sat, 03 Apr 2021 11:00:30: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:00:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:00:30: #1 tags after filtering in treatment: 14626574 INFO @ Sat, 03 Apr 2021 11:00:30: #1 Redundant rate of treatment: 0.22 INFO @ Sat, 03 Apr 2021 11:00:30: #1 finished! INFO @ Sat, 03 Apr 2021 11:00:30: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:00:30: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:00:31: #2 number of paired peaks: 178 WARNING @ Sat, 03 Apr 2021 11:00:31: Fewer paired peaks (178) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 178 pairs to build model! INFO @ Sat, 03 Apr 2021 11:00:31: start model_add_line... INFO @ Sat, 03 Apr 2021 11:00:31: start X-correlation... INFO @ Sat, 03 Apr 2021 11:00:31: end of X-cor INFO @ Sat, 03 Apr 2021 11:00:31: #2 finished! INFO @ Sat, 03 Apr 2021 11:00:31: #2 predicted fragment length is 154 bps INFO @ Sat, 03 Apr 2021 11:00:31: #2 alternative fragment length(s) may be 154 bps INFO @ Sat, 03 Apr 2021 11:00:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.10_model.r WARNING @ Sat, 03 Apr 2021 11:00:31: #2 Since the d (154) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:00:31: #2 You may need to consider one of the other alternative d(s): 154 WARNING @ Sat, 03 Apr 2021 11:00:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:00:31: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:00:31: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:00:33: 49000000 INFO @ Sat, 03 Apr 2021 11:00:40: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:00:47: 50000000 INFO @ Sat, 03 Apr 2021 11:00:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.05_peaks.xls INFO @ Sat, 03 Apr 2021 11:00:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:00:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.05_summits.bed INFO @ Sat, 03 Apr 2021 11:00:57: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (5549 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 11:00:58: 51000000 INFO @ Sat, 03 Apr 2021 11:01:00: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:01:02: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 11:01:02: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 11:01:02: #1 total tags in treatment: 18694938 INFO @ Sat, 03 Apr 2021 11:01:02: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 11:01:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 11:01:02: #1 tags after filtering in treatment: 14626574 INFO @ Sat, 03 Apr 2021 11:01:02: #1 Redundant rate of treatment: 0.22 INFO @ Sat, 03 Apr 2021 11:01:02: #1 finished! INFO @ Sat, 03 Apr 2021 11:01:02: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 11:01:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 11:01:03: #2 number of paired peaks: 178 WARNING @ Sat, 03 Apr 2021 11:01:03: Fewer paired peaks (178) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 178 pairs to build model! INFO @ Sat, 03 Apr 2021 11:01:03: start model_add_line... INFO @ Sat, 03 Apr 2021 11:01:03: start X-correlation... INFO @ Sat, 03 Apr 2021 11:01:03: end of X-cor INFO @ Sat, 03 Apr 2021 11:01:03: #2 finished! INFO @ Sat, 03 Apr 2021 11:01:03: #2 predicted fragment length is 154 bps INFO @ Sat, 03 Apr 2021 11:01:03: #2 alternative fragment length(s) may be 154 bps INFO @ Sat, 03 Apr 2021 11:01:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.20_model.r WARNING @ Sat, 03 Apr 2021 11:01:04: #2 Since the d (154) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 11:01:04: #2 You may need to consider one of the other alternative d(s): 154 WARNING @ Sat, 03 Apr 2021 11:01:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 11:01:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 11:01:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 11:01:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.10_peaks.xls INFO @ Sat, 03 Apr 2021 11:01:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:01:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.10_summits.bed INFO @ Sat, 03 Apr 2021 11:01:17: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (1644 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 11:01:32: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 11:01:49: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.20_peaks.xls INFO @ Sat, 03 Apr 2021 11:01:49: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 11:01:49: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817541/SRX6817541.20_summits.bed INFO @ Sat, 03 Apr 2021 11:01:49: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (466 records, 4 fields): 2 millis CompletedMACS2peakCalling