Job ID = 12265372 SRX = SRX6817530 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 48047967 spots for SRR10084521/SRR10084521.sra Written 48047967 spots for SRR10084521/SRR10084521.sra fastq に変換しました。 bowtie でマッピング中... Your job 12266604 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:03:38 48047967 reads; of these: 48047967 (100.00%) were paired; of these: 20957250 (43.62%) aligned concordantly 0 times 21205125 (44.13%) aligned concordantly exactly 1 time 5885592 (12.25%) aligned concordantly >1 times ---- 20957250 pairs aligned concordantly 0 times; of these: 5352016 (25.54%) aligned discordantly 1 time ---- 15605234 pairs aligned 0 times concordantly or discordantly; of these: 31210468 mates make up the pairs; of these: 26450317 (84.75%) aligned 0 times 1522644 (4.88%) aligned exactly 1 time 3237507 (10.37%) aligned >1 times 72.48% overall alignment rate Time searching: 02:03:38 Overall time: 02:03:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 9514278 / 32268868 = 0.2948 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:30:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:30:45: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:30:45: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:30:54: 1000000 INFO @ Sat, 03 Apr 2021 09:31:03: 2000000 INFO @ Sat, 03 Apr 2021 09:31:12: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:31:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:31:15: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:31:15: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:31:22: 4000000 INFO @ Sat, 03 Apr 2021 09:31:25: 1000000 INFO @ Sat, 03 Apr 2021 09:31:32: 5000000 INFO @ Sat, 03 Apr 2021 09:31:35: 2000000 INFO @ Sat, 03 Apr 2021 09:31:42: 6000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 09:31:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 09:31:45: #1 read tag files... INFO @ Sat, 03 Apr 2021 09:31:45: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 09:31:45: 3000000 INFO @ Sat, 03 Apr 2021 09:31:52: 7000000 INFO @ Sat, 03 Apr 2021 09:31:56: 1000000 INFO @ Sat, 03 Apr 2021 09:31:56: 4000000 INFO @ Sat, 03 Apr 2021 09:32:02: 8000000 INFO @ Sat, 03 Apr 2021 09:32:06: 2000000 INFO @ Sat, 03 Apr 2021 09:32:06: 5000000 INFO @ Sat, 03 Apr 2021 09:32:12: 9000000 INFO @ Sat, 03 Apr 2021 09:32:16: 3000000 INFO @ Sat, 03 Apr 2021 09:32:17: 6000000 INFO @ Sat, 03 Apr 2021 09:32:22: 10000000 INFO @ Sat, 03 Apr 2021 09:32:26: 4000000 INFO @ Sat, 03 Apr 2021 09:32:27: 7000000 INFO @ Sat, 03 Apr 2021 09:32:33: 11000000 INFO @ Sat, 03 Apr 2021 09:32:36: 5000000 INFO @ Sat, 03 Apr 2021 09:32:37: 8000000 INFO @ Sat, 03 Apr 2021 09:32:43: 12000000 INFO @ Sat, 03 Apr 2021 09:32:46: 6000000 INFO @ Sat, 03 Apr 2021 09:32:48: 9000000 INFO @ Sat, 03 Apr 2021 09:32:53: 13000000 INFO @ Sat, 03 Apr 2021 09:32:57: 7000000 INFO @ Sat, 03 Apr 2021 09:32:58: 10000000 INFO @ Sat, 03 Apr 2021 09:33:03: 14000000 INFO @ Sat, 03 Apr 2021 09:33:07: 8000000 INFO @ Sat, 03 Apr 2021 09:33:09: 11000000 INFO @ Sat, 03 Apr 2021 09:33:13: 15000000 INFO @ Sat, 03 Apr 2021 09:33:17: 9000000 INFO @ Sat, 03 Apr 2021 09:33:19: 12000000 INFO @ Sat, 03 Apr 2021 09:33:23: 16000000 INFO @ Sat, 03 Apr 2021 09:33:27: 10000000 INFO @ Sat, 03 Apr 2021 09:33:29: 13000000 INFO @ Sat, 03 Apr 2021 09:33:33: 17000000 INFO @ Sat, 03 Apr 2021 09:33:38: 11000000 INFO @ Sat, 03 Apr 2021 09:33:40: 14000000 INFO @ Sat, 03 Apr 2021 09:33:44: 18000000 INFO @ Sat, 03 Apr 2021 09:33:48: 12000000 INFO @ Sat, 03 Apr 2021 09:33:50: 15000000 INFO @ Sat, 03 Apr 2021 09:33:54: 19000000 INFO @ Sat, 03 Apr 2021 09:33:58: 13000000 INFO @ Sat, 03 Apr 2021 09:34:00: 16000000 INFO @ Sat, 03 Apr 2021 09:34:05: 20000000 INFO @ Sat, 03 Apr 2021 09:34:08: 14000000 INFO @ Sat, 03 Apr 2021 09:34:11: 17000000 INFO @ Sat, 03 Apr 2021 09:34:15: 21000000 INFO @ Sat, 03 Apr 2021 09:34:19: 15000000 INFO @ Sat, 03 Apr 2021 09:34:21: 18000000 INFO @ Sat, 03 Apr 2021 09:34:26: 22000000 INFO @ Sat, 03 Apr 2021 09:34:29: 16000000 INFO @ Sat, 03 Apr 2021 09:34:31: 19000000 INFO @ Sat, 03 Apr 2021 09:34:36: 23000000 INFO @ Sat, 03 Apr 2021 09:34:39: 17000000 INFO @ Sat, 03 Apr 2021 09:34:42: 20000000 INFO @ Sat, 03 Apr 2021 09:34:46: 24000000 INFO @ Sat, 03 Apr 2021 09:34:49: 18000000 INFO @ Sat, 03 Apr 2021 09:34:53: 21000000 INFO @ Sat, 03 Apr 2021 09:34:56: 25000000 INFO @ Sat, 03 Apr 2021 09:35:00: 19000000 INFO @ Sat, 03 Apr 2021 09:35:03: 22000000 INFO @ Sat, 03 Apr 2021 09:35:07: 26000000 INFO @ Sat, 03 Apr 2021 09:35:11: 20000000 INFO @ Sat, 03 Apr 2021 09:35:13: 23000000 INFO @ Sat, 03 Apr 2021 09:35:17: 27000000 INFO @ Sat, 03 Apr 2021 09:35:21: 21000000 INFO @ Sat, 03 Apr 2021 09:35:24: 24000000 INFO @ Sat, 03 Apr 2021 09:35:27: 28000000 INFO @ Sat, 03 Apr 2021 09:35:31: 22000000 INFO @ Sat, 03 Apr 2021 09:35:34: 25000000 INFO @ Sat, 03 Apr 2021 09:35:38: 29000000 INFO @ Sat, 03 Apr 2021 09:35:41: 23000000 INFO @ Sat, 03 Apr 2021 09:35:45: 26000000 INFO @ Sat, 03 Apr 2021 09:35:48: 30000000 INFO @ Sat, 03 Apr 2021 09:35:52: 24000000 INFO @ Sat, 03 Apr 2021 09:35:55: 27000000 INFO @ Sat, 03 Apr 2021 09:35:59: 31000000 INFO @ Sat, 03 Apr 2021 09:36:02: 25000000 INFO @ Sat, 03 Apr 2021 09:36:06: 28000000 INFO @ Sat, 03 Apr 2021 09:36:10: 32000000 INFO @ Sat, 03 Apr 2021 09:36:14: 26000000 INFO @ Sat, 03 Apr 2021 09:36:17: 29000000 INFO @ Sat, 03 Apr 2021 09:36:20: 33000000 INFO @ Sat, 03 Apr 2021 09:36:24: 27000000 INFO @ Sat, 03 Apr 2021 09:36:28: 30000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 09:36:31: 34000000 INFO @ Sat, 03 Apr 2021 09:36:35: 28000000 INFO @ Sat, 03 Apr 2021 09:36:39: 31000000 INFO @ Sat, 03 Apr 2021 09:36:42: 35000000 INFO @ Sat, 03 Apr 2021 09:36:46: 29000000 INFO @ Sat, 03 Apr 2021 09:36:49: 32000000 INFO @ Sat, 03 Apr 2021 09:36:52: 36000000 INFO @ Sat, 03 Apr 2021 09:36:56: 30000000 INFO @ Sat, 03 Apr 2021 09:37:00: 33000000 INFO @ Sat, 03 Apr 2021 09:37:02: 37000000 INFO @ Sat, 03 Apr 2021 09:37:07: 31000000 INFO @ Sat, 03 Apr 2021 09:37:11: 34000000 INFO @ Sat, 03 Apr 2021 09:37:13: 38000000 INFO @ Sat, 03 Apr 2021 09:37:17: 32000000 INFO @ Sat, 03 Apr 2021 09:37:22: 35000000 INFO @ Sat, 03 Apr 2021 09:37:24: 39000000 INFO @ Sat, 03 Apr 2021 09:37:28: 33000000 INFO @ Sat, 03 Apr 2021 09:37:32: 36000000 INFO @ Sat, 03 Apr 2021 09:37:35: 40000000 INFO @ Sat, 03 Apr 2021 09:37:39: 34000000 INFO @ Sat, 03 Apr 2021 09:37:43: 37000000 INFO @ Sat, 03 Apr 2021 09:37:46: 41000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 09:37:49: 35000000 INFO @ Sat, 03 Apr 2021 09:37:54: 38000000 INFO @ Sat, 03 Apr 2021 09:37:57: 42000000 INFO @ Sat, 03 Apr 2021 09:38:00: 36000000 INFO @ Sat, 03 Apr 2021 09:38:05: 39000000 INFO @ Sat, 03 Apr 2021 09:38:09: 43000000 INFO @ Sat, 03 Apr 2021 09:38:10: 37000000 INFO @ Sat, 03 Apr 2021 09:38:16: 40000000 INFO @ Sat, 03 Apr 2021 09:38:20: 44000000 INFO @ Sat, 03 Apr 2021 09:38:21: 38000000 INFO @ Sat, 03 Apr 2021 09:38:27: 41000000 INFO @ Sat, 03 Apr 2021 09:38:30: 45000000 INFO @ Sat, 03 Apr 2021 09:38:31: 39000000 INFO @ Sat, 03 Apr 2021 09:38:38: 42000000 INFO @ Sat, 03 Apr 2021 09:38:41: 46000000 INFO @ Sat, 03 Apr 2021 09:38:42: 40000000 INFO @ Sat, 03 Apr 2021 09:38:49: 43000000 INFO @ Sat, 03 Apr 2021 09:38:52: 47000000 INFO @ Sat, 03 Apr 2021 09:38:53: 41000000 INFO @ Sat, 03 Apr 2021 09:39:00: 44000000 INFO @ Sat, 03 Apr 2021 09:39:03: 48000000 INFO @ Sat, 03 Apr 2021 09:39:04: 42000000 INFO @ Sat, 03 Apr 2021 09:39:11: 45000000 INFO @ Sat, 03 Apr 2021 09:39:13: 49000000 INFO @ Sat, 03 Apr 2021 09:39:15: 43000000 INFO @ Sat, 03 Apr 2021 09:39:22: 46000000 INFO @ Sat, 03 Apr 2021 09:39:24: 50000000 INFO @ Sat, 03 Apr 2021 09:39:26: 44000000 INFO @ Sat, 03 Apr 2021 09:39:30: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 09:39:30: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 09:39:30: #1 total tags in treatment: 18733033 INFO @ Sat, 03 Apr 2021 09:39:30: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:39:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:39:31: #1 tags after filtering in treatment: 14930496 INFO @ Sat, 03 Apr 2021 09:39:31: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 03 Apr 2021 09:39:31: #1 finished! INFO @ Sat, 03 Apr 2021 09:39:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:39:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:39:32: #2 number of paired peaks: 153 WARNING @ Sat, 03 Apr 2021 09:39:32: Fewer paired peaks (153) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 153 pairs to build model! INFO @ Sat, 03 Apr 2021 09:39:32: start model_add_line... INFO @ Sat, 03 Apr 2021 09:39:32: start X-correlation... INFO @ Sat, 03 Apr 2021 09:39:32: end of X-cor INFO @ Sat, 03 Apr 2021 09:39:32: #2 finished! INFO @ Sat, 03 Apr 2021 09:39:32: #2 predicted fragment length is 191 bps INFO @ Sat, 03 Apr 2021 09:39:32: #2 alternative fragment length(s) may be 191,216 bps INFO @ Sat, 03 Apr 2021 09:39:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.05_model.r WARNING @ Sat, 03 Apr 2021 09:39:32: #2 Since the d (191) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:39:32: #2 You may need to consider one of the other alternative d(s): 191,216 WARNING @ Sat, 03 Apr 2021 09:39:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:39:32: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:39:32: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:39:33: 47000000 INFO @ Sat, 03 Apr 2021 09:39:36: 45000000 INFO @ Sat, 03 Apr 2021 09:39:44: 48000000 INFO @ Sat, 03 Apr 2021 09:39:47: 46000000 INFO @ Sat, 03 Apr 2021 09:39:54: 49000000 INFO @ Sat, 03 Apr 2021 09:39:57: 47000000 INFO @ Sat, 03 Apr 2021 09:40:04: 50000000 INFO @ Sat, 03 Apr 2021 09:40:08: 48000000 INFO @ Sat, 03 Apr 2021 09:40:09: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:40:11: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 09:40:11: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 09:40:11: #1 total tags in treatment: 18733033 INFO @ Sat, 03 Apr 2021 09:40:11: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:40:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:40:11: #1 tags after filtering in treatment: 14930496 INFO @ Sat, 03 Apr 2021 09:40:11: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 03 Apr 2021 09:40:11: #1 finished! INFO @ Sat, 03 Apr 2021 09:40:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:40:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:40:12: #2 number of paired peaks: 153 WARNING @ Sat, 03 Apr 2021 09:40:12: Fewer paired peaks (153) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 153 pairs to build model! INFO @ Sat, 03 Apr 2021 09:40:12: start model_add_line... INFO @ Sat, 03 Apr 2021 09:40:12: start X-correlation... INFO @ Sat, 03 Apr 2021 09:40:12: end of X-cor INFO @ Sat, 03 Apr 2021 09:40:12: #2 finished! INFO @ Sat, 03 Apr 2021 09:40:12: #2 predicted fragment length is 191 bps INFO @ Sat, 03 Apr 2021 09:40:12: #2 alternative fragment length(s) may be 191,216 bps INFO @ Sat, 03 Apr 2021 09:40:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.10_model.r WARNING @ Sat, 03 Apr 2021 09:40:12: #2 Since the d (191) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:40:12: #2 You may need to consider one of the other alternative d(s): 191,216 WARNING @ Sat, 03 Apr 2021 09:40:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:40:12: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:40:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:40:17: 49000000 INFO @ Sat, 03 Apr 2021 09:40:26: 50000000 INFO @ Sat, 03 Apr 2021 09:40:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.05_peaks.xls INFO @ Sat, 03 Apr 2021 09:40:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:40:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.05_summits.bed INFO @ Sat, 03 Apr 2021 09:40:27: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (6290 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:40:32: #1 tag size is determined as 150 bps INFO @ Sat, 03 Apr 2021 09:40:32: #1 tag size = 150 INFO @ Sat, 03 Apr 2021 09:40:32: #1 total tags in treatment: 18733033 INFO @ Sat, 03 Apr 2021 09:40:32: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 09:40:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 09:40:32: #1 tags after filtering in treatment: 14930496 INFO @ Sat, 03 Apr 2021 09:40:32: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 03 Apr 2021 09:40:32: #1 finished! INFO @ Sat, 03 Apr 2021 09:40:32: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 09:40:32: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 09:40:33: #2 number of paired peaks: 153 WARNING @ Sat, 03 Apr 2021 09:40:33: Fewer paired peaks (153) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 153 pairs to build model! INFO @ Sat, 03 Apr 2021 09:40:33: start model_add_line... INFO @ Sat, 03 Apr 2021 09:40:33: start X-correlation... INFO @ Sat, 03 Apr 2021 09:40:33: end of X-cor INFO @ Sat, 03 Apr 2021 09:40:33: #2 finished! INFO @ Sat, 03 Apr 2021 09:40:33: #2 predicted fragment length is 191 bps INFO @ Sat, 03 Apr 2021 09:40:33: #2 alternative fragment length(s) may be 191,216 bps INFO @ Sat, 03 Apr 2021 09:40:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.20_model.r WARNING @ Sat, 03 Apr 2021 09:40:33: #2 Since the d (191) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 09:40:33: #2 You may need to consider one of the other alternative d(s): 191,216 WARNING @ Sat, 03 Apr 2021 09:40:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 09:40:33: #3 Call peaks... INFO @ Sat, 03 Apr 2021 09:40:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 09:40:48: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 09:41:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.10_peaks.xls INFO @ Sat, 03 Apr 2021 09:41:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:41:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.10_summits.bed INFO @ Sat, 03 Apr 2021 09:41:06: Done! INFO @ Sat, 03 Apr 2021 09:41:06: #3 Call peaks for each chromosome... pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (2128 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 09:41:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.20_peaks.xls INFO @ Sat, 03 Apr 2021 09:41:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 09:41:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6817530/SRX6817530.20_summits.bed INFO @ Sat, 03 Apr 2021 09:41:22: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (470 records, 4 fields): 1 millis CompletedMACS2peakCalling