Job ID = 5720920 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 44,925,706 reads read : 89,851,412 reads written : 89,851,412 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:39:58 44925706 reads; of these: 44925706 (100.00%) were paired; of these: 1181105 (2.63%) aligned concordantly 0 times 40461507 (90.06%) aligned concordantly exactly 1 time 3283094 (7.31%) aligned concordantly >1 times ---- 1181105 pairs aligned concordantly 0 times; of these: 119637 (10.13%) aligned discordantly 1 time ---- 1061468 pairs aligned 0 times concordantly or discordantly; of these: 2122936 mates make up the pairs; of these: 1365921 (64.34%) aligned 0 times 646658 (30.46%) aligned exactly 1 time 110357 (5.20%) aligned >1 times 98.48% overall alignment rate Time searching: 00:39:58 Overall time: 00:39:58 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4561206 / 43807429 = 0.1041 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:39:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:39:00: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:39:00: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:39:04: 1000000 INFO @ Thu, 16 Apr 2020 04:39:09: 2000000 INFO @ Thu, 16 Apr 2020 04:39:13: 3000000 INFO @ Thu, 16 Apr 2020 04:39:18: 4000000 INFO @ Thu, 16 Apr 2020 04:39:23: 5000000 INFO @ Thu, 16 Apr 2020 04:39:27: 6000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:39:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:39:30: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:39:30: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:39:32: 7000000 INFO @ Thu, 16 Apr 2020 04:39:36: 1000000 INFO @ Thu, 16 Apr 2020 04:39:38: 8000000 INFO @ Thu, 16 Apr 2020 04:39:41: 2000000 INFO @ Thu, 16 Apr 2020 04:39:43: 9000000 INFO @ Thu, 16 Apr 2020 04:39:47: 3000000 INFO @ Thu, 16 Apr 2020 04:39:48: 10000000 INFO @ Thu, 16 Apr 2020 04:39:53: 4000000 INFO @ Thu, 16 Apr 2020 04:39:53: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:39:59: 12000000 INFO @ Thu, 16 Apr 2020 04:39:59: 5000000 INFO @ Thu, 16 Apr 2020 04:40:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:40:00: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:40:00: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:40:04: 13000000 INFO @ Thu, 16 Apr 2020 04:40:05: 1000000 INFO @ Thu, 16 Apr 2020 04:40:05: 6000000 INFO @ Thu, 16 Apr 2020 04:40:09: 14000000 INFO @ Thu, 16 Apr 2020 04:40:10: 2000000 INFO @ Thu, 16 Apr 2020 04:40:11: 7000000 INFO @ Thu, 16 Apr 2020 04:40:14: 15000000 INFO @ Thu, 16 Apr 2020 04:40:16: 3000000 INFO @ Thu, 16 Apr 2020 04:40:18: 8000000 INFO @ Thu, 16 Apr 2020 04:40:20: 16000000 INFO @ Thu, 16 Apr 2020 04:40:21: 4000000 INFO @ Thu, 16 Apr 2020 04:40:24: 9000000 INFO @ Thu, 16 Apr 2020 04:40:25: 17000000 INFO @ Thu, 16 Apr 2020 04:40:26: 5000000 INFO @ Thu, 16 Apr 2020 04:40:30: 10000000 INFO @ Thu, 16 Apr 2020 04:40:30: 18000000 INFO @ Thu, 16 Apr 2020 04:40:32: 6000000 INFO @ Thu, 16 Apr 2020 04:40:36: 19000000 INFO @ Thu, 16 Apr 2020 04:40:36: 11000000 INFO @ Thu, 16 Apr 2020 04:40:37: 7000000 INFO @ Thu, 16 Apr 2020 04:40:41: 20000000 INFO @ Thu, 16 Apr 2020 04:40:42: 12000000 INFO @ Thu, 16 Apr 2020 04:40:43: 8000000 INFO @ Thu, 16 Apr 2020 04:40:47: 21000000 INFO @ Thu, 16 Apr 2020 04:40:48: 13000000 INFO @ Thu, 16 Apr 2020 04:40:48: 9000000 INFO @ Thu, 16 Apr 2020 04:40:52: 22000000 INFO @ Thu, 16 Apr 2020 04:40:54: 10000000 INFO @ Thu, 16 Apr 2020 04:40:54: 14000000 INFO @ Thu, 16 Apr 2020 04:40:57: 23000000 INFO @ Thu, 16 Apr 2020 04:40:59: 11000000 INFO @ Thu, 16 Apr 2020 04:41:01: 15000000 INFO @ Thu, 16 Apr 2020 04:41:03: 24000000 INFO @ Thu, 16 Apr 2020 04:41:04: 12000000 INFO @ Thu, 16 Apr 2020 04:41:06: 16000000 INFO @ Thu, 16 Apr 2020 04:41:08: 25000000 INFO @ Thu, 16 Apr 2020 04:41:10: 13000000 INFO @ Thu, 16 Apr 2020 04:41:12: 17000000 INFO @ Thu, 16 Apr 2020 04:41:14: 26000000 INFO @ Thu, 16 Apr 2020 04:41:16: 14000000 INFO @ Thu, 16 Apr 2020 04:41:18: 18000000 INFO @ Thu, 16 Apr 2020 04:41:19: 27000000 INFO @ Thu, 16 Apr 2020 04:41:21: 15000000 INFO @ Thu, 16 Apr 2020 04:41:25: 19000000 INFO @ Thu, 16 Apr 2020 04:41:25: 28000000 INFO @ Thu, 16 Apr 2020 04:41:27: 16000000 INFO @ Thu, 16 Apr 2020 04:41:30: 29000000 INFO @ Thu, 16 Apr 2020 04:41:31: 20000000 INFO @ Thu, 16 Apr 2020 04:41:32: 17000000 INFO @ Thu, 16 Apr 2020 04:41:36: 30000000 INFO @ Thu, 16 Apr 2020 04:41:37: 21000000 INFO @ Thu, 16 Apr 2020 04:41:38: 18000000 INFO @ Thu, 16 Apr 2020 04:41:41: 31000000 INFO @ Thu, 16 Apr 2020 04:41:42: 22000000 INFO @ Thu, 16 Apr 2020 04:41:43: 19000000 INFO @ Thu, 16 Apr 2020 04:41:47: 32000000 INFO @ Thu, 16 Apr 2020 04:41:48: 23000000 INFO @ Thu, 16 Apr 2020 04:41:49: 20000000 INFO @ Thu, 16 Apr 2020 04:41:52: 33000000 INFO @ Thu, 16 Apr 2020 04:41:55: 24000000 INFO @ Thu, 16 Apr 2020 04:41:55: 21000000 INFO @ Thu, 16 Apr 2020 04:41:57: 34000000 INFO @ Thu, 16 Apr 2020 04:42:00: 22000000 INFO @ Thu, 16 Apr 2020 04:42:01: 25000000 INFO @ Thu, 16 Apr 2020 04:42:03: 35000000 INFO @ Thu, 16 Apr 2020 04:42:06: 23000000 INFO @ Thu, 16 Apr 2020 04:42:07: 26000000 INFO @ Thu, 16 Apr 2020 04:42:08: 36000000 INFO @ Thu, 16 Apr 2020 04:42:12: 24000000 INFO @ Thu, 16 Apr 2020 04:42:13: 27000000 INFO @ Thu, 16 Apr 2020 04:42:14: 37000000 INFO @ Thu, 16 Apr 2020 04:42:18: 25000000 INFO @ Thu, 16 Apr 2020 04:42:19: 28000000 INFO @ Thu, 16 Apr 2020 04:42:19: 38000000 INFO @ Thu, 16 Apr 2020 04:42:23: 26000000 INFO @ Thu, 16 Apr 2020 04:42:25: 39000000 INFO @ Thu, 16 Apr 2020 04:42:25: 29000000 INFO @ Thu, 16 Apr 2020 04:42:29: 27000000 INFO @ Thu, 16 Apr 2020 04:42:30: 40000000 INFO @ Thu, 16 Apr 2020 04:42:31: 30000000 INFO @ Thu, 16 Apr 2020 04:42:34: 28000000 INFO @ Thu, 16 Apr 2020 04:42:35: 41000000 INFO @ Thu, 16 Apr 2020 04:42:37: 31000000 INFO @ Thu, 16 Apr 2020 04:42:40: 29000000 INFO @ Thu, 16 Apr 2020 04:42:41: 42000000 INFO @ Thu, 16 Apr 2020 04:42:43: 32000000 INFO @ Thu, 16 Apr 2020 04:42:46: 30000000 INFO @ Thu, 16 Apr 2020 04:42:46: 43000000 INFO @ Thu, 16 Apr 2020 04:42:49: 33000000 INFO @ Thu, 16 Apr 2020 04:42:51: 31000000 INFO @ Thu, 16 Apr 2020 04:42:52: 44000000 INFO @ Thu, 16 Apr 2020 04:42:54: 34000000 INFO @ Thu, 16 Apr 2020 04:42:57: 45000000 INFO @ Thu, 16 Apr 2020 04:42:57: 32000000 INFO @ Thu, 16 Apr 2020 04:43:00: 35000000 INFO @ Thu, 16 Apr 2020 04:43:02: 46000000 INFO @ Thu, 16 Apr 2020 04:43:03: 33000000 INFO @ Thu, 16 Apr 2020 04:43:06: 36000000 INFO @ Thu, 16 Apr 2020 04:43:08: 47000000 INFO @ Thu, 16 Apr 2020 04:43:08: 34000000 INFO @ Thu, 16 Apr 2020 04:43:12: 37000000 INFO @ Thu, 16 Apr 2020 04:43:13: 48000000 INFO @ Thu, 16 Apr 2020 04:43:14: 35000000 INFO @ Thu, 16 Apr 2020 04:43:18: 49000000 INFO @ Thu, 16 Apr 2020 04:43:18: 38000000 INFO @ Thu, 16 Apr 2020 04:43:19: 36000000 INFO @ Thu, 16 Apr 2020 04:43:23: 50000000 INFO @ Thu, 16 Apr 2020 04:43:24: 39000000 INFO @ Thu, 16 Apr 2020 04:43:25: 37000000 INFO @ Thu, 16 Apr 2020 04:43:29: 51000000 INFO @ Thu, 16 Apr 2020 04:43:30: 40000000 INFO @ Thu, 16 Apr 2020 04:43:31: 38000000 INFO @ Thu, 16 Apr 2020 04:43:34: 52000000 INFO @ Thu, 16 Apr 2020 04:43:36: 41000000 INFO @ Thu, 16 Apr 2020 04:43:36: 39000000 INFO @ Thu, 16 Apr 2020 04:43:39: 53000000 INFO @ Thu, 16 Apr 2020 04:43:42: 40000000 INFO @ Thu, 16 Apr 2020 04:43:42: 42000000 INFO @ Thu, 16 Apr 2020 04:43:45: 54000000 INFO @ Thu, 16 Apr 2020 04:43:47: 41000000 INFO @ Thu, 16 Apr 2020 04:43:48: 43000000 INFO @ Thu, 16 Apr 2020 04:43:50: 55000000 INFO @ Thu, 16 Apr 2020 04:43:53: 42000000 INFO @ Thu, 16 Apr 2020 04:43:54: 44000000 INFO @ Thu, 16 Apr 2020 04:43:55: 56000000 INFO @ Thu, 16 Apr 2020 04:43:59: 43000000 INFO @ Thu, 16 Apr 2020 04:44:00: 45000000 INFO @ Thu, 16 Apr 2020 04:44:01: 57000000 INFO @ Thu, 16 Apr 2020 04:44:04: 44000000 INFO @ Thu, 16 Apr 2020 04:44:06: 46000000 INFO @ Thu, 16 Apr 2020 04:44:06: 58000000 INFO @ Thu, 16 Apr 2020 04:44:09: 45000000 INFO @ Thu, 16 Apr 2020 04:44:11: 59000000 INFO @ Thu, 16 Apr 2020 04:44:12: 47000000 INFO @ Thu, 16 Apr 2020 04:44:15: 46000000 INFO @ Thu, 16 Apr 2020 04:44:16: 60000000 INFO @ Thu, 16 Apr 2020 04:44:17: 48000000 INFO @ Thu, 16 Apr 2020 04:44:20: 47000000 INFO @ Thu, 16 Apr 2020 04:44:22: 61000000 INFO @ Thu, 16 Apr 2020 04:44:23: 49000000 INFO @ Thu, 16 Apr 2020 04:44:26: 48000000 INFO @ Thu, 16 Apr 2020 04:44:27: 62000000 INFO @ Thu, 16 Apr 2020 04:44:29: 50000000 INFO @ Thu, 16 Apr 2020 04:44:31: 49000000 INFO @ Thu, 16 Apr 2020 04:44:32: 63000000 INFO @ Thu, 16 Apr 2020 04:44:35: 51000000 INFO @ Thu, 16 Apr 2020 04:44:37: 50000000 INFO @ Thu, 16 Apr 2020 04:44:38: 64000000 INFO @ Thu, 16 Apr 2020 04:44:41: 52000000 INFO @ Thu, 16 Apr 2020 04:44:42: 51000000 INFO @ Thu, 16 Apr 2020 04:44:43: 65000000 INFO @ Thu, 16 Apr 2020 04:44:47: 53000000 INFO @ Thu, 16 Apr 2020 04:44:48: 52000000 INFO @ Thu, 16 Apr 2020 04:44:48: 66000000 INFO @ Thu, 16 Apr 2020 04:44:53: 54000000 INFO @ Thu, 16 Apr 2020 04:44:53: 53000000 INFO @ Thu, 16 Apr 2020 04:44:54: 67000000 INFO @ Thu, 16 Apr 2020 04:44:59: 54000000 INFO @ Thu, 16 Apr 2020 04:44:59: 68000000 INFO @ Thu, 16 Apr 2020 04:44:59: 55000000 INFO @ Thu, 16 Apr 2020 04:45:04: 69000000 INFO @ Thu, 16 Apr 2020 04:45:04: 55000000 INFO @ Thu, 16 Apr 2020 04:45:05: 56000000 INFO @ Thu, 16 Apr 2020 04:45:09: 70000000 INFO @ Thu, 16 Apr 2020 04:45:10: 56000000 INFO @ Thu, 16 Apr 2020 04:45:10: 57000000 INFO @ Thu, 16 Apr 2020 04:45:15: 71000000 INFO @ Thu, 16 Apr 2020 04:45:15: 57000000 INFO @ Thu, 16 Apr 2020 04:45:16: 58000000 INFO @ Thu, 16 Apr 2020 04:45:20: 72000000 INFO @ Thu, 16 Apr 2020 04:45:21: 58000000 INFO @ Thu, 16 Apr 2020 04:45:22: 59000000 INFO @ Thu, 16 Apr 2020 04:45:25: 73000000 INFO @ Thu, 16 Apr 2020 04:45:26: 59000000 INFO @ Thu, 16 Apr 2020 04:45:28: 60000000 INFO @ Thu, 16 Apr 2020 04:45:31: 74000000 INFO @ Thu, 16 Apr 2020 04:45:32: 60000000 INFO @ Thu, 16 Apr 2020 04:45:34: 61000000 INFO @ Thu, 16 Apr 2020 04:45:36: 75000000 INFO @ Thu, 16 Apr 2020 04:45:37: 61000000 INFO @ Thu, 16 Apr 2020 04:45:40: 62000000 INFO @ Thu, 16 Apr 2020 04:45:41: 76000000 INFO @ Thu, 16 Apr 2020 04:45:43: 62000000 INFO @ Thu, 16 Apr 2020 04:45:46: 63000000 INFO @ Thu, 16 Apr 2020 04:45:47: 77000000 INFO @ Thu, 16 Apr 2020 04:45:49: 63000000 INFO @ Thu, 16 Apr 2020 04:45:52: 64000000 INFO @ Thu, 16 Apr 2020 04:45:52: 78000000 INFO @ Thu, 16 Apr 2020 04:45:54: 64000000 INFO @ Thu, 16 Apr 2020 04:45:58: 79000000 INFO @ Thu, 16 Apr 2020 04:45:58: 65000000 INFO @ Thu, 16 Apr 2020 04:46:00: 65000000 INFO @ Thu, 16 Apr 2020 04:46:00: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:46:00: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:46:00: #1 total tags in treatment: 39186051 INFO @ Thu, 16 Apr 2020 04:46:00: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:46:00: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:46:01: #1 tags after filtering in treatment: 23717832 INFO @ Thu, 16 Apr 2020 04:46:01: #1 Redundant rate of treatment: 0.39 INFO @ Thu, 16 Apr 2020 04:46:01: #1 finished! INFO @ Thu, 16 Apr 2020 04:46:01: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:46:01: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:46:03: #2 number of paired peaks: 7771 INFO @ Thu, 16 Apr 2020 04:46:03: start model_add_line... INFO @ Thu, 16 Apr 2020 04:46:03: start X-correlation... INFO @ Thu, 16 Apr 2020 04:46:03: end of X-cor INFO @ Thu, 16 Apr 2020 04:46:03: #2 finished! INFO @ Thu, 16 Apr 2020 04:46:03: #2 predicted fragment length is 131 bps INFO @ Thu, 16 Apr 2020 04:46:03: #2 alternative fragment length(s) may be 131 bps INFO @ Thu, 16 Apr 2020 04:46:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.05_model.r INFO @ Thu, 16 Apr 2020 04:46:03: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:46:03: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:46:04: 66000000 INFO @ Thu, 16 Apr 2020 04:46:05: 66000000 INFO @ Thu, 16 Apr 2020 04:46:10: 67000000 INFO @ Thu, 16 Apr 2020 04:46:11: 67000000 INFO @ Thu, 16 Apr 2020 04:46:15: 68000000 INFO @ Thu, 16 Apr 2020 04:46:16: 68000000 INFO @ Thu, 16 Apr 2020 04:46:21: 69000000 INFO @ Thu, 16 Apr 2020 04:46:22: 69000000 INFO @ Thu, 16 Apr 2020 04:46:28: 70000000 INFO @ Thu, 16 Apr 2020 04:46:28: 70000000 INFO @ Thu, 16 Apr 2020 04:46:34: 71000000 INFO @ Thu, 16 Apr 2020 04:46:34: 71000000 INFO @ Thu, 16 Apr 2020 04:46:40: 72000000 INFO @ Thu, 16 Apr 2020 04:46:40: 72000000 INFO @ Thu, 16 Apr 2020 04:46:46: 73000000 INFO @ Thu, 16 Apr 2020 04:46:46: 73000000 INFO @ Thu, 16 Apr 2020 04:46:52: 74000000 INFO @ Thu, 16 Apr 2020 04:46:52: 74000000 INFO @ Thu, 16 Apr 2020 04:46:58: 75000000 INFO @ Thu, 16 Apr 2020 04:46:58: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:46:58: 75000000 INFO @ Thu, 16 Apr 2020 04:47:04: 76000000 INFO @ Thu, 16 Apr 2020 04:47:04: 76000000 INFO @ Thu, 16 Apr 2020 04:47:10: 77000000 INFO @ Thu, 16 Apr 2020 04:47:10: 77000000 INFO @ Thu, 16 Apr 2020 04:47:16: 78000000 INFO @ Thu, 16 Apr 2020 04:47:16: 78000000 INFO @ Thu, 16 Apr 2020 04:47:22: 79000000 INFO @ Thu, 16 Apr 2020 04:47:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:47:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:47:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.05_summits.bed INFO @ Thu, 16 Apr 2020 04:47:22: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (13697 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:47:22: 79000000 INFO @ Thu, 16 Apr 2020 04:47:24: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:47:24: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:47:24: #1 total tags in treatment: 39186051 INFO @ Thu, 16 Apr 2020 04:47:24: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:47:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:47:25: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:47:25: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:47:25: #1 total tags in treatment: 39186051 INFO @ Thu, 16 Apr 2020 04:47:25: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:47:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:47:25: #1 tags after filtering in treatment: 23717832 INFO @ Thu, 16 Apr 2020 04:47:25: #1 Redundant rate of treatment: 0.39 INFO @ Thu, 16 Apr 2020 04:47:25: #1 finished! INFO @ Thu, 16 Apr 2020 04:47:25: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:47:25: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:47:26: #1 tags after filtering in treatment: 23717832 INFO @ Thu, 16 Apr 2020 04:47:26: #1 Redundant rate of treatment: 0.39 INFO @ Thu, 16 Apr 2020 04:47:26: #1 finished! INFO @ Thu, 16 Apr 2020 04:47:26: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:47:26: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:47:27: #2 number of paired peaks: 7771 INFO @ Thu, 16 Apr 2020 04:47:27: start model_add_line... INFO @ Thu, 16 Apr 2020 04:47:27: start X-correlation... INFO @ Thu, 16 Apr 2020 04:47:27: end of X-cor INFO @ Thu, 16 Apr 2020 04:47:27: #2 finished! INFO @ Thu, 16 Apr 2020 04:47:27: #2 predicted fragment length is 131 bps INFO @ Thu, 16 Apr 2020 04:47:27: #2 alternative fragment length(s) may be 131 bps INFO @ Thu, 16 Apr 2020 04:47:27: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.10_model.r INFO @ Thu, 16 Apr 2020 04:47:27: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:47:27: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:47:28: #2 number of paired peaks: 7771 INFO @ Thu, 16 Apr 2020 04:47:28: start model_add_line... INFO @ Thu, 16 Apr 2020 04:47:28: start X-correlation... INFO @ Thu, 16 Apr 2020 04:47:28: end of X-cor INFO @ Thu, 16 Apr 2020 04:47:28: #2 finished! INFO @ Thu, 16 Apr 2020 04:47:28: #2 predicted fragment length is 131 bps INFO @ Thu, 16 Apr 2020 04:47:28: #2 alternative fragment length(s) may be 131 bps INFO @ Thu, 16 Apr 2020 04:47:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.20_model.r INFO @ Thu, 16 Apr 2020 04:47:28: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:47:28: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 04:48:19: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:48:21: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:48:43: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:48:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:48:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.20_summits.bed INFO @ Thu, 16 Apr 2020 04:48:43: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (7859 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:48:44: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:48:44: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:48:44: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354119/SRX6354119.10_summits.bed INFO @ Thu, 16 Apr 2020 04:48:44: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (10260 records, 4 fields): 11 millis CompletedMACS2peakCalling BigWig に変換しました。