Job ID = 5720919 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... spots read : 37,098,262 reads read : 74,196,524 reads written : 74,196,524 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:36:06 37098262 reads; of these: 37098262 (100.00%) were paired; of these: 1145601 (3.09%) aligned concordantly 0 times 32637054 (87.97%) aligned concordantly exactly 1 time 3315607 (8.94%) aligned concordantly >1 times ---- 1145601 pairs aligned concordantly 0 times; of these: 168074 (14.67%) aligned discordantly 1 time ---- 977527 pairs aligned 0 times concordantly or discordantly; of these: 1955054 mates make up the pairs; of these: 1167728 (59.73%) aligned 0 times 656220 (33.57%) aligned exactly 1 time 131106 (6.71%) aligned >1 times 98.43% overall alignment rate Time searching: 00:36:06 Overall time: 00:36:06 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3538464 / 36067963 = 0.0981 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:27:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:27:03: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:27:03: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:27:09: 1000000 INFO @ Thu, 16 Apr 2020 04:27:14: 2000000 INFO @ Thu, 16 Apr 2020 04:27:19: 3000000 INFO @ Thu, 16 Apr 2020 04:27:24: 4000000 INFO @ Thu, 16 Apr 2020 04:27:29: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:27:33: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:27:33: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:27:33: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:27:34: 6000000 INFO @ Thu, 16 Apr 2020 04:27:39: 1000000 INFO @ Thu, 16 Apr 2020 04:27:39: 7000000 INFO @ Thu, 16 Apr 2020 04:27:44: 2000000 INFO @ Thu, 16 Apr 2020 04:27:44: 8000000 INFO @ Thu, 16 Apr 2020 04:27:49: 3000000 INFO @ Thu, 16 Apr 2020 04:27:50: 9000000 INFO @ Thu, 16 Apr 2020 04:27:54: 4000000 INFO @ Thu, 16 Apr 2020 04:27:55: 10000000 INFO @ Thu, 16 Apr 2020 04:27:59: 5000000 INFO @ Thu, 16 Apr 2020 04:28:00: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:28:03: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:28:03: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:28:03: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:28:04: 6000000 INFO @ Thu, 16 Apr 2020 04:28:05: 12000000 INFO @ Thu, 16 Apr 2020 04:28:08: 1000000 INFO @ Thu, 16 Apr 2020 04:28:09: 7000000 INFO @ Thu, 16 Apr 2020 04:28:10: 13000000 INFO @ Thu, 16 Apr 2020 04:28:14: 2000000 INFO @ Thu, 16 Apr 2020 04:28:14: 8000000 INFO @ Thu, 16 Apr 2020 04:28:15: 14000000 INFO @ Thu, 16 Apr 2020 04:28:19: 3000000 INFO @ Thu, 16 Apr 2020 04:28:19: 9000000 INFO @ Thu, 16 Apr 2020 04:28:21: 15000000 INFO @ Thu, 16 Apr 2020 04:28:24: 4000000 INFO @ Thu, 16 Apr 2020 04:28:25: 10000000 INFO @ Thu, 16 Apr 2020 04:28:26: 16000000 INFO @ Thu, 16 Apr 2020 04:28:29: 5000000 INFO @ Thu, 16 Apr 2020 04:28:30: 11000000 INFO @ Thu, 16 Apr 2020 04:28:31: 17000000 INFO @ Thu, 16 Apr 2020 04:28:34: 6000000 INFO @ Thu, 16 Apr 2020 04:28:35: 12000000 INFO @ Thu, 16 Apr 2020 04:28:36: 18000000 INFO @ Thu, 16 Apr 2020 04:28:39: 7000000 INFO @ Thu, 16 Apr 2020 04:28:40: 13000000 INFO @ Thu, 16 Apr 2020 04:28:42: 19000000 INFO @ Thu, 16 Apr 2020 04:28:44: 8000000 INFO @ Thu, 16 Apr 2020 04:28:45: 14000000 INFO @ Thu, 16 Apr 2020 04:28:47: 20000000 INFO @ Thu, 16 Apr 2020 04:28:49: 9000000 INFO @ Thu, 16 Apr 2020 04:28:51: 15000000 INFO @ Thu, 16 Apr 2020 04:28:52: 21000000 INFO @ Thu, 16 Apr 2020 04:28:54: 10000000 INFO @ Thu, 16 Apr 2020 04:28:56: 16000000 INFO @ Thu, 16 Apr 2020 04:28:57: 22000000 INFO @ Thu, 16 Apr 2020 04:28:59: 11000000 INFO @ Thu, 16 Apr 2020 04:29:01: 17000000 INFO @ Thu, 16 Apr 2020 04:29:02: 23000000 INFO @ Thu, 16 Apr 2020 04:29:04: 12000000 INFO @ Thu, 16 Apr 2020 04:29:06: 18000000 INFO @ Thu, 16 Apr 2020 04:29:07: 24000000 INFO @ Thu, 16 Apr 2020 04:29:09: 13000000 INFO @ Thu, 16 Apr 2020 04:29:11: 19000000 INFO @ Thu, 16 Apr 2020 04:29:13: 25000000 INFO @ Thu, 16 Apr 2020 04:29:14: 14000000 INFO @ Thu, 16 Apr 2020 04:29:17: 20000000 INFO @ Thu, 16 Apr 2020 04:29:18: 26000000 INFO @ Thu, 16 Apr 2020 04:29:20: 15000000 INFO @ Thu, 16 Apr 2020 04:29:22: 21000000 INFO @ Thu, 16 Apr 2020 04:29:23: 27000000 INFO @ Thu, 16 Apr 2020 04:29:25: 16000000 INFO @ Thu, 16 Apr 2020 04:29:27: 22000000 INFO @ Thu, 16 Apr 2020 04:29:28: 28000000 INFO @ Thu, 16 Apr 2020 04:29:30: 17000000 INFO @ Thu, 16 Apr 2020 04:29:32: 23000000 INFO @ Thu, 16 Apr 2020 04:29:33: 29000000 INFO @ Thu, 16 Apr 2020 04:29:35: 18000000 INFO @ Thu, 16 Apr 2020 04:29:37: 24000000 INFO @ Thu, 16 Apr 2020 04:29:39: 30000000 INFO @ Thu, 16 Apr 2020 04:29:40: 19000000 INFO @ Thu, 16 Apr 2020 04:29:43: 25000000 INFO @ Thu, 16 Apr 2020 04:29:44: 31000000 INFO @ Thu, 16 Apr 2020 04:29:45: 20000000 INFO @ Thu, 16 Apr 2020 04:29:48: 26000000 INFO @ Thu, 16 Apr 2020 04:29:49: 32000000 INFO @ Thu, 16 Apr 2020 04:29:50: 21000000 INFO @ Thu, 16 Apr 2020 04:29:53: 27000000 INFO @ Thu, 16 Apr 2020 04:29:54: 33000000 INFO @ Thu, 16 Apr 2020 04:29:56: 22000000 INFO @ Thu, 16 Apr 2020 04:29:58: 28000000 INFO @ Thu, 16 Apr 2020 04:30:00: 34000000 INFO @ Thu, 16 Apr 2020 04:30:01: 23000000 INFO @ Thu, 16 Apr 2020 04:30:03: 29000000 INFO @ Thu, 16 Apr 2020 04:30:05: 35000000 INFO @ Thu, 16 Apr 2020 04:30:06: 24000000 INFO @ Thu, 16 Apr 2020 04:30:08: 30000000 INFO @ Thu, 16 Apr 2020 04:30:10: 36000000 INFO @ Thu, 16 Apr 2020 04:30:11: 25000000 INFO @ Thu, 16 Apr 2020 04:30:13: 31000000 INFO @ Thu, 16 Apr 2020 04:30:15: 37000000 INFO @ Thu, 16 Apr 2020 04:30:16: 26000000 INFO @ Thu, 16 Apr 2020 04:30:19: 32000000 INFO @ Thu, 16 Apr 2020 04:30:20: 38000000 INFO @ Thu, 16 Apr 2020 04:30:21: 27000000 INFO @ Thu, 16 Apr 2020 04:30:24: 33000000 INFO @ Thu, 16 Apr 2020 04:30:26: 39000000 INFO @ Thu, 16 Apr 2020 04:30:26: 28000000 INFO @ Thu, 16 Apr 2020 04:30:29: 34000000 INFO @ Thu, 16 Apr 2020 04:30:31: 29000000 INFO @ Thu, 16 Apr 2020 04:30:31: 40000000 INFO @ Thu, 16 Apr 2020 04:30:34: 35000000 INFO @ Thu, 16 Apr 2020 04:30:36: 30000000 INFO @ Thu, 16 Apr 2020 04:30:36: 41000000 INFO @ Thu, 16 Apr 2020 04:30:39: 36000000 INFO @ Thu, 16 Apr 2020 04:30:41: 31000000 INFO @ Thu, 16 Apr 2020 04:30:41: 42000000 INFO @ Thu, 16 Apr 2020 04:30:44: 37000000 INFO @ Thu, 16 Apr 2020 04:30:46: 32000000 INFO @ Thu, 16 Apr 2020 04:30:46: 43000000 INFO @ Thu, 16 Apr 2020 04:30:49: 38000000 INFO @ Thu, 16 Apr 2020 04:30:51: 33000000 INFO @ Thu, 16 Apr 2020 04:30:52: 44000000 INFO @ Thu, 16 Apr 2020 04:30:54: 39000000 INFO @ Thu, 16 Apr 2020 04:30:56: 34000000 INFO @ Thu, 16 Apr 2020 04:30:57: 45000000 INFO @ Thu, 16 Apr 2020 04:30:59: 40000000 INFO @ Thu, 16 Apr 2020 04:31:01: 35000000 INFO @ Thu, 16 Apr 2020 04:31:02: 46000000 INFO @ Thu, 16 Apr 2020 04:31:04: 41000000 INFO @ Thu, 16 Apr 2020 04:31:06: 36000000 INFO @ Thu, 16 Apr 2020 04:31:06: 47000000 INFO @ Thu, 16 Apr 2020 04:31:09: 42000000 INFO @ Thu, 16 Apr 2020 04:31:10: 37000000 INFO @ Thu, 16 Apr 2020 04:31:11: 48000000 INFO @ Thu, 16 Apr 2020 04:31:14: 43000000 INFO @ Thu, 16 Apr 2020 04:31:16: 38000000 INFO @ Thu, 16 Apr 2020 04:31:16: 49000000 INFO @ Thu, 16 Apr 2020 04:31:19: 44000000 INFO @ Thu, 16 Apr 2020 04:31:20: 39000000 INFO @ Thu, 16 Apr 2020 04:31:21: 50000000 INFO @ Thu, 16 Apr 2020 04:31:24: 45000000 INFO @ Thu, 16 Apr 2020 04:31:26: 40000000 INFO @ Thu, 16 Apr 2020 04:31:26: 51000000 INFO @ Thu, 16 Apr 2020 04:31:29: 46000000 INFO @ Thu, 16 Apr 2020 04:31:31: 41000000 INFO @ Thu, 16 Apr 2020 04:31:31: 52000000 INFO @ Thu, 16 Apr 2020 04:31:34: 47000000 INFO @ Thu, 16 Apr 2020 04:31:36: 42000000 INFO @ Thu, 16 Apr 2020 04:31:36: 53000000 INFO @ Thu, 16 Apr 2020 04:31:39: 48000000 INFO @ Thu, 16 Apr 2020 04:31:41: 43000000 INFO @ Thu, 16 Apr 2020 04:31:41: 54000000 INFO @ Thu, 16 Apr 2020 04:31:44: 49000000 INFO @ Thu, 16 Apr 2020 04:31:46: 44000000 INFO @ Thu, 16 Apr 2020 04:31:46: 55000000 INFO @ Thu, 16 Apr 2020 04:31:49: 50000000 INFO @ Thu, 16 Apr 2020 04:31:51: 56000000 INFO @ Thu, 16 Apr 2020 04:31:51: 45000000 INFO @ Thu, 16 Apr 2020 04:31:54: 51000000 INFO @ Thu, 16 Apr 2020 04:31:56: 57000000 INFO @ Thu, 16 Apr 2020 04:31:56: 46000000 INFO @ Thu, 16 Apr 2020 04:31:59: 52000000 INFO @ Thu, 16 Apr 2020 04:32:01: 58000000 INFO @ Thu, 16 Apr 2020 04:32:01: 47000000 INFO @ Thu, 16 Apr 2020 04:32:04: 53000000 INFO @ Thu, 16 Apr 2020 04:32:05: 59000000 INFO @ Thu, 16 Apr 2020 04:32:06: 48000000 INFO @ Thu, 16 Apr 2020 04:32:08: 54000000 INFO @ Thu, 16 Apr 2020 04:32:10: 60000000 INFO @ Thu, 16 Apr 2020 04:32:11: 49000000 INFO @ Thu, 16 Apr 2020 04:32:13: 55000000 INFO @ Thu, 16 Apr 2020 04:32:15: 61000000 INFO @ Thu, 16 Apr 2020 04:32:15: 50000000 INFO @ Thu, 16 Apr 2020 04:32:18: 56000000 INFO @ Thu, 16 Apr 2020 04:32:20: 62000000 INFO @ Thu, 16 Apr 2020 04:32:20: 51000000 INFO @ Thu, 16 Apr 2020 04:32:23: 57000000 INFO @ Thu, 16 Apr 2020 04:32:25: 63000000 INFO @ Thu, 16 Apr 2020 04:32:25: 52000000 INFO @ Thu, 16 Apr 2020 04:32:28: 58000000 INFO @ Thu, 16 Apr 2020 04:32:30: 64000000 INFO @ Thu, 16 Apr 2020 04:32:30: 53000000 INFO @ Thu, 16 Apr 2020 04:32:33: 59000000 INFO @ Thu, 16 Apr 2020 04:32:35: 65000000 INFO @ Thu, 16 Apr 2020 04:32:35: 54000000 INFO @ Thu, 16 Apr 2020 04:32:37: 60000000 INFO @ Thu, 16 Apr 2020 04:32:40: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:32:40: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:32:40: #1 total tags in treatment: 32417597 INFO @ Thu, 16 Apr 2020 04:32:40: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:32:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:32:40: 55000000 INFO @ Thu, 16 Apr 2020 04:32:40: #1 tags after filtering in treatment: 22025647 INFO @ Thu, 16 Apr 2020 04:32:40: #1 Redundant rate of treatment: 0.32 INFO @ Thu, 16 Apr 2020 04:32:40: #1 finished! INFO @ Thu, 16 Apr 2020 04:32:40: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:32:40: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:32:42: #2 number of paired peaks: 5514 INFO @ Thu, 16 Apr 2020 04:32:42: start model_add_line... INFO @ Thu, 16 Apr 2020 04:32:42: 61000000 INFO @ Thu, 16 Apr 2020 04:32:43: start X-correlation... INFO @ Thu, 16 Apr 2020 04:32:43: end of X-cor INFO @ Thu, 16 Apr 2020 04:32:43: #2 finished! INFO @ Thu, 16 Apr 2020 04:32:43: #2 predicted fragment length is 161 bps INFO @ Thu, 16 Apr 2020 04:32:43: #2 alternative fragment length(s) may be 161 bps INFO @ Thu, 16 Apr 2020 04:32:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.05_model.r INFO @ Thu, 16 Apr 2020 04:32:43: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:32:43: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:32:45: 56000000 INFO @ Thu, 16 Apr 2020 04:32:47: 62000000 INFO @ Thu, 16 Apr 2020 04:32:50: 57000000 INFO @ Thu, 16 Apr 2020 04:32:52: 63000000 INFO @ Thu, 16 Apr 2020 04:32:54: 58000000 INFO @ Thu, 16 Apr 2020 04:32:57: 64000000 INFO @ Thu, 16 Apr 2020 04:32:59: 59000000 INFO @ Thu, 16 Apr 2020 04:33:02: 65000000 INFO @ Thu, 16 Apr 2020 04:33:04: 60000000 INFO @ Thu, 16 Apr 2020 04:33:07: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:33:07: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:33:07: #1 total tags in treatment: 32417597 INFO @ Thu, 16 Apr 2020 04:33:07: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:33:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:33:08: #1 tags after filtering in treatment: 22025647 INFO @ Thu, 16 Apr 2020 04:33:08: #1 Redundant rate of treatment: 0.32 INFO @ Thu, 16 Apr 2020 04:33:08: #1 finished! INFO @ Thu, 16 Apr 2020 04:33:08: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:33:08: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:33:09: 61000000 INFO @ Thu, 16 Apr 2020 04:33:09: #2 number of paired peaks: 5514 INFO @ Thu, 16 Apr 2020 04:33:09: start model_add_line... INFO @ Thu, 16 Apr 2020 04:33:10: start X-correlation... INFO @ Thu, 16 Apr 2020 04:33:10: end of X-cor INFO @ Thu, 16 Apr 2020 04:33:10: #2 finished! INFO @ Thu, 16 Apr 2020 04:33:10: #2 predicted fragment length is 161 bps INFO @ Thu, 16 Apr 2020 04:33:10: #2 alternative fragment length(s) may be 161 bps INFO @ Thu, 16 Apr 2020 04:33:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.10_model.r INFO @ Thu, 16 Apr 2020 04:33:10: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:33:10: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:33:13: 62000000 INFO @ Thu, 16 Apr 2020 04:33:18: 63000000 INFO @ Thu, 16 Apr 2020 04:33:23: 64000000 INFO @ Thu, 16 Apr 2020 04:33:28: 65000000 INFO @ Thu, 16 Apr 2020 04:33:33: #1 tag size is determined as 50 bps INFO @ Thu, 16 Apr 2020 04:33:33: #1 tag size = 50 INFO @ Thu, 16 Apr 2020 04:33:33: #1 total tags in treatment: 32417597 INFO @ Thu, 16 Apr 2020 04:33:33: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:33:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:33:33: #1 tags after filtering in treatment: 22025647 INFO @ Thu, 16 Apr 2020 04:33:33: #1 Redundant rate of treatment: 0.32 INFO @ Thu, 16 Apr 2020 04:33:33: #1 finished! INFO @ Thu, 16 Apr 2020 04:33:33: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:33:33: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:33:34: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:33:35: #2 number of paired peaks: 5514 INFO @ Thu, 16 Apr 2020 04:33:35: start model_add_line... INFO @ Thu, 16 Apr 2020 04:33:35: start X-correlation... INFO @ Thu, 16 Apr 2020 04:33:35: end of X-cor INFO @ Thu, 16 Apr 2020 04:33:35: #2 finished! INFO @ Thu, 16 Apr 2020 04:33:35: #2 predicted fragment length is 161 bps INFO @ Thu, 16 Apr 2020 04:33:35: #2 alternative fragment length(s) may be 161 bps INFO @ Thu, 16 Apr 2020 04:33:35: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.20_model.r INFO @ Thu, 16 Apr 2020 04:33:35: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:33:35: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:33:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:33:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:33:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.05_summits.bed INFO @ Thu, 16 Apr 2020 04:33:57: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (22253 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:34:00: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:34:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:34:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:34:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.10_summits.bed INFO @ Thu, 16 Apr 2020 04:34:23: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (12511 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:34:27: #3 Call peaks for each chromosome... BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 04:34:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:34:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:34:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX6354118/SRX6354118.20_summits.bed INFO @ Thu, 16 Apr 2020 04:34:50: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (7503 records, 4 fields): 8 millis CompletedMACS2peakCalling BigWig に変換しました。