Job ID = 5720828 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T16:38:34 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T16:38:34 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing '165.112.9.238' from '172.19.7.205' 2020-04-15T16:38:34 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (165.112.9.238) from '172.19.7.205' 2020-04-15T16:38:34 fasterq-dump.2.9.6 err: connection failed while opening file within cryptographic module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/008415/SRR8617253' 2020-04-15T16:38:34 fasterq-dump.2.9.6 err: cmn_iter.c cmn_iter_open_db().VDBManagerOpenDBRead( 'SRR8617253' ) -> RC(rcKrypto,rcFile,rcOpening,rcConnection,rcFailed) 2020-04-15T16:38:34 fasterq-dump.2.9.6 err: make_fastq_iter() -> RC(rcKrypto,rcFile,rcOpening,rcConnection,rcFailed) 2020-04-15T16:43:17 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T16:50:10 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T16:51:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T16:51:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T16:51:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T16:51:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:12:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( ) 2020-04-15T17:12:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:12:59 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:16:48 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:25:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 90,799,801 reads read : 181,599,602 reads written : 181,599,602 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:38:24 90799801 reads; of these: 90799801 (100.00%) were paired; of these: 3314622 (3.65%) aligned concordantly 0 times 77610806 (85.47%) aligned concordantly exactly 1 time 9874373 (10.87%) aligned concordantly >1 times ---- 3314622 pairs aligned concordantly 0 times; of these: 249823 (7.54%) aligned discordantly 1 time ---- 3064799 pairs aligned 0 times concordantly or discordantly; of these: 6129598 mates make up the pairs; of these: 3539353 (57.74%) aligned 0 times 2087867 (34.06%) aligned exactly 1 time 502378 (8.20%) aligned >1 times 98.05% overall alignment rate Time searching: 01:38:24 Overall time: 01:38:24 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 17783557 / 87689619 = 0.2028 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 05:57:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 05:57:53: #1 read tag files... INFO @ Thu, 16 Apr 2020 05:57:53: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 05:57:59: 1000000 INFO @ Thu, 16 Apr 2020 05:58:04: 2000000 INFO @ Thu, 16 Apr 2020 05:58:09: 3000000 INFO @ Thu, 16 Apr 2020 05:58:15: 4000000 INFO @ Thu, 16 Apr 2020 05:58:21: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 05:58:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 05:58:23: #1 read tag files... INFO @ Thu, 16 Apr 2020 05:58:23: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 05:58:26: 6000000 INFO @ Thu, 16 Apr 2020 05:58:29: 1000000 INFO @ Thu, 16 Apr 2020 05:58:32: 7000000 INFO @ Thu, 16 Apr 2020 05:58:34: 2000000 INFO @ Thu, 16 Apr 2020 05:58:38: 8000000 INFO @ Thu, 16 Apr 2020 05:58:40: 3000000 INFO @ Thu, 16 Apr 2020 05:58:44: 9000000 INFO @ Thu, 16 Apr 2020 05:58:46: 4000000 INFO @ Thu, 16 Apr 2020 05:58:50: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 05:58:52: 5000000 INFO @ Thu, 16 Apr 2020 05:58:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 05:58:53: #1 read tag files... INFO @ Thu, 16 Apr 2020 05:58:53: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 05:58:56: 11000000 INFO @ Thu, 16 Apr 2020 05:58:58: 6000000 INFO @ Thu, 16 Apr 2020 05:58:59: 1000000 INFO @ Thu, 16 Apr 2020 05:59:02: 12000000 INFO @ Thu, 16 Apr 2020 05:59:04: 7000000 INFO @ Thu, 16 Apr 2020 05:59:04: 2000000 INFO @ Thu, 16 Apr 2020 05:59:08: 13000000 INFO @ Thu, 16 Apr 2020 05:59:10: 8000000 INFO @ Thu, 16 Apr 2020 05:59:10: 3000000 INFO @ Thu, 16 Apr 2020 05:59:13: 14000000 INFO @ Thu, 16 Apr 2020 05:59:16: 9000000 INFO @ Thu, 16 Apr 2020 05:59:16: 4000000 INFO @ Thu, 16 Apr 2020 05:59:19: 15000000 INFO @ Thu, 16 Apr 2020 05:59:22: 10000000 INFO @ Thu, 16 Apr 2020 05:59:22: 5000000 INFO @ Thu, 16 Apr 2020 05:59:25: 16000000 INFO @ Thu, 16 Apr 2020 05:59:27: 11000000 INFO @ Thu, 16 Apr 2020 05:59:28: 6000000 INFO @ Thu, 16 Apr 2020 05:59:31: 17000000 INFO @ Thu, 16 Apr 2020 05:59:33: 12000000 INFO @ Thu, 16 Apr 2020 05:59:34: 7000000 INFO @ Thu, 16 Apr 2020 05:59:37: 18000000 INFO @ Thu, 16 Apr 2020 05:59:39: 13000000 INFO @ Thu, 16 Apr 2020 05:59:40: 8000000 INFO @ Thu, 16 Apr 2020 05:59:43: 19000000 INFO @ Thu, 16 Apr 2020 05:59:45: 14000000 INFO @ Thu, 16 Apr 2020 05:59:46: 9000000 INFO @ Thu, 16 Apr 2020 05:59:49: 20000000 INFO @ Thu, 16 Apr 2020 05:59:51: 15000000 INFO @ Thu, 16 Apr 2020 05:59:52: 10000000 INFO @ Thu, 16 Apr 2020 05:59:55: 21000000 INFO @ Thu, 16 Apr 2020 05:59:57: 16000000 INFO @ Thu, 16 Apr 2020 05:59:58: 11000000 INFO @ Thu, 16 Apr 2020 06:00:01: 22000000 INFO @ Thu, 16 Apr 2020 06:00:03: 17000000 INFO @ Thu, 16 Apr 2020 06:00:04: 12000000 INFO @ Thu, 16 Apr 2020 06:00:07: 23000000 INFO @ Thu, 16 Apr 2020 06:00:09: 18000000 INFO @ Thu, 16 Apr 2020 06:00:09: 13000000 INFO @ Thu, 16 Apr 2020 06:00:13: 24000000 INFO @ Thu, 16 Apr 2020 06:00:15: 19000000 INFO @ Thu, 16 Apr 2020 06:00:15: 14000000 INFO @ Thu, 16 Apr 2020 06:00:19: 25000000 INFO @ Thu, 16 Apr 2020 06:00:21: 20000000 INFO @ Thu, 16 Apr 2020 06:00:21: 15000000 INFO @ Thu, 16 Apr 2020 06:00:25: 26000000 INFO @ Thu, 16 Apr 2020 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INFO @ Thu, 16 Apr 2020 06:02:05: 42000000 INFO @ Thu, 16 Apr 2020 06:02:05: 32000000 INFO @ Thu, 16 Apr 2020 06:02:05: 37000000 INFO @ Thu, 16 Apr 2020 06:02:10: 43000000 INFO @ Thu, 16 Apr 2020 06:02:11: 33000000 INFO @ Thu, 16 Apr 2020 06:02:11: 38000000 INFO @ Thu, 16 Apr 2020 06:02:16: 44000000 INFO @ Thu, 16 Apr 2020 06:02:16: 34000000 INFO @ Thu, 16 Apr 2020 06:02:17: 39000000 INFO @ Thu, 16 Apr 2020 06:02:22: 45000000 INFO @ Thu, 16 Apr 2020 06:02:22: 35000000 INFO @ Thu, 16 Apr 2020 06:02:23: 40000000 INFO @ Thu, 16 Apr 2020 06:02:28: 46000000 INFO @ Thu, 16 Apr 2020 06:02:28: 36000000 INFO @ Thu, 16 Apr 2020 06:02:29: 41000000 INFO @ Thu, 16 Apr 2020 06:02:34: 47000000 INFO @ Thu, 16 Apr 2020 06:02:34: 37000000 INFO @ Thu, 16 Apr 2020 06:02:35: 42000000 INFO @ Thu, 16 Apr 2020 06:02:40: 48000000 INFO @ Thu, 16 Apr 2020 06:02:40: 38000000 INFO @ Thu, 16 Apr 2020 06:02:41: 43000000 INFO @ Thu, 16 Apr 2020 06:02:46: 49000000 INFO @ Thu, 16 Apr 2020 06:02:46: 39000000 INFO @ Thu, 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55000000 INFO @ Thu, 16 Apr 2020 06:04:20: 65000000 INFO @ Thu, 16 Apr 2020 06:04:21: 60000000 INFO @ Thu, 16 Apr 2020 06:04:26: 56000000 INFO @ Thu, 16 Apr 2020 06:04:26: 66000000 INFO @ Thu, 16 Apr 2020 06:04:27: 61000000 INFO @ Thu, 16 Apr 2020 06:04:32: 57000000 INFO @ Thu, 16 Apr 2020 06:04:32: 67000000 INFO @ Thu, 16 Apr 2020 06:04:32: 62000000 INFO @ Thu, 16 Apr 2020 06:04:38: 58000000 INFO @ Thu, 16 Apr 2020 06:04:38: 68000000 INFO @ Thu, 16 Apr 2020 06:04:38: 63000000 INFO @ Thu, 16 Apr 2020 06:04:43: 59000000 INFO @ Thu, 16 Apr 2020 06:04:44: 69000000 INFO @ Thu, 16 Apr 2020 06:04:44: 64000000 INFO @ Thu, 16 Apr 2020 06:04:49: 60000000 INFO @ Thu, 16 Apr 2020 06:04:50: 70000000 INFO @ Thu, 16 Apr 2020 06:04:50: 65000000 INFO @ Thu, 16 Apr 2020 06:04:55: 61000000 INFO @ Thu, 16 Apr 2020 06:04:55: 71000000 INFO @ Thu, 16 Apr 2020 06:04:56: 66000000 INFO @ Thu, 16 Apr 2020 06:05:01: 62000000 INFO @ Thu, 16 Apr 2020 06:05:01: 72000000 INFO @ Thu, 16 Apr 2020 06:05:02: 67000000 INFO @ Thu, 16 Apr 2020 06:05:07: 63000000 INFO @ Thu, 16 Apr 2020 06:05:07: 73000000 INFO @ Thu, 16 Apr 2020 06:05:08: 68000000 INFO @ Thu, 16 Apr 2020 06:05:13: 64000000 INFO @ Thu, 16 Apr 2020 06:05:13: 74000000 INFO @ Thu, 16 Apr 2020 06:05:13: 69000000 INFO @ Thu, 16 Apr 2020 06:05:19: 65000000 INFO @ Thu, 16 Apr 2020 06:05:19: 75000000 INFO @ Thu, 16 Apr 2020 06:05:19: 70000000 INFO @ Thu, 16 Apr 2020 06:05:25: 76000000 INFO @ Thu, 16 Apr 2020 06:05:25: 66000000 INFO @ Thu, 16 Apr 2020 06:05:25: 71000000 INFO @ Thu, 16 Apr 2020 06:05:31: 77000000 INFO @ Thu, 16 Apr 2020 06:05:31: 67000000 INFO @ Thu, 16 Apr 2020 06:05:31: 72000000 INFO @ Thu, 16 Apr 2020 06:05:37: 78000000 INFO @ Thu, 16 Apr 2020 06:05:37: 68000000 INFO @ Thu, 16 Apr 2020 06:05:37: 73000000 INFO @ Thu, 16 Apr 2020 06:05:43: 79000000 INFO @ Thu, 16 Apr 2020 06:05:43: 69000000 INFO @ Thu, 16 Apr 2020 06:05:43: 74000000 INFO @ Thu, 16 Apr 2020 06:05:49: 80000000 INFO @ Thu, 16 Apr 2020 06:05:49: 70000000 INFO @ Thu, 16 Apr 2020 06:05:49: 75000000 INFO @ Thu, 16 Apr 2020 06:05:54: 81000000 INFO @ Thu, 16 Apr 2020 06:05:55: 71000000 INFO @ Thu, 16 Apr 2020 06:05:55: 76000000 INFO @ Thu, 16 Apr 2020 06:06:00: 82000000 INFO @ Thu, 16 Apr 2020 06:06:01: 72000000 INFO @ Thu, 16 Apr 2020 06:06:01: 77000000 INFO @ Thu, 16 Apr 2020 06:06:06: 83000000 INFO @ Thu, 16 Apr 2020 06:06:07: 73000000 INFO @ Thu, 16 Apr 2020 06:06:07: 78000000 INFO @ Thu, 16 Apr 2020 06:06:12: 84000000 INFO @ Thu, 16 Apr 2020 06:06:12: 74000000 INFO @ Thu, 16 Apr 2020 06:06:13: 79000000 INFO @ Thu, 16 Apr 2020 06:06:18: 85000000 INFO @ Thu, 16 Apr 2020 06:06:18: 75000000 INFO @ Thu, 16 Apr 2020 06:06:18: 80000000 INFO @ Thu, 16 Apr 2020 06:06:24: 86000000 INFO @ Thu, 16 Apr 2020 06:06:24: 81000000 INFO @ Thu, 16 Apr 2020 06:06:24: 76000000 INFO @ Thu, 16 Apr 2020 06:06:29: 87000000 INFO @ Thu, 16 Apr 2020 06:06:30: 82000000 INFO @ Thu, 16 Apr 2020 06:06:30: 77000000 INFO @ Thu, 16 Apr 2020 06:06:35: 88000000 INFO @ Thu, 16 Apr 2020 06:06:36: 83000000 INFO @ Thu, 16 Apr 2020 06:06:36: 78000000 INFO @ Thu, 16 Apr 2020 06:06:41: 89000000 INFO @ Thu, 16 Apr 2020 06:06:42: 84000000 INFO @ Thu, 16 Apr 2020 06:06:42: 79000000 INFO @ Thu, 16 Apr 2020 06:06:47: 90000000 INFO @ Thu, 16 Apr 2020 06:06:47: 85000000 INFO @ Thu, 16 Apr 2020 06:06:47: 80000000 INFO @ Thu, 16 Apr 2020 06:06:53: 91000000 INFO @ Thu, 16 Apr 2020 06:06:53: 86000000 INFO @ Thu, 16 Apr 2020 06:06:53: 81000000 INFO @ Thu, 16 Apr 2020 06:06:58: 92000000 INFO @ Thu, 16 Apr 2020 06:06:59: 87000000 INFO @ Thu, 16 Apr 2020 06:06:59: 82000000 INFO @ Thu, 16 Apr 2020 06:07:04: 93000000 INFO @ Thu, 16 Apr 2020 06:07:04: 88000000 INFO @ Thu, 16 Apr 2020 06:07:05: 83000000 INFO @ Thu, 16 Apr 2020 06:07:10: 94000000 INFO @ Thu, 16 Apr 2020 06:07:10: 89000000 INFO @ Thu, 16 Apr 2020 06:07:10: 84000000 INFO @ Thu, 16 Apr 2020 06:07:16: 95000000 INFO @ Thu, 16 Apr 2020 06:07:16: 90000000 INFO @ Thu, 16 Apr 2020 06:07:16: 85000000 INFO @ Thu, 16 Apr 2020 06:07:22: 96000000 INFO @ Thu, 16 Apr 2020 06:07:22: 91000000 INFO @ Thu, 16 Apr 2020 06:07:22: 86000000 INFO @ Thu, 16 Apr 2020 06:07:27: 97000000 INFO @ Thu, 16 Apr 2020 06:07:28: 92000000 INFO @ Thu, 16 Apr 2020 06:07:28: 87000000 INFO @ Thu, 16 Apr 2020 06:07:33: 98000000 INFO @ Thu, 16 Apr 2020 06:07:33: 93000000 INFO @ Thu, 16 Apr 2020 06:07:34: 88000000 INFO @ Thu, 16 Apr 2020 06:07:39: 99000000 INFO @ Thu, 16 Apr 2020 06:07:39: 94000000 INFO @ Thu, 16 Apr 2020 06:07:40: 89000000 INFO @ Thu, 16 Apr 2020 06:07:45: 95000000 INFO @ Thu, 16 Apr 2020 06:07:45: 100000000 INFO @ Thu, 16 Apr 2020 06:07:46: 90000000 INFO @ Thu, 16 Apr 2020 06:07:51: 96000000 INFO @ Thu, 16 Apr 2020 06:07:51: 101000000 INFO @ Thu, 16 Apr 2020 06:07:51: 91000000 INFO @ Thu, 16 Apr 2020 06:07:57: 97000000 INFO @ Thu, 16 Apr 2020 06:07:57: 102000000 INFO @ Thu, 16 Apr 2020 06:07:57: 92000000 INFO @ Thu, 16 Apr 2020 06:08:02: 98000000 INFO @ Thu, 16 Apr 2020 06:08:03: 103000000 INFO @ Thu, 16 Apr 2020 06:08:03: 93000000 INFO @ Thu, 16 Apr 2020 06:08:08: 99000000 INFO @ Thu, 16 Apr 2020 06:08:08: 104000000 INFO @ Thu, 16 Apr 2020 06:08:09: 94000000 INFO @ Thu, 16 Apr 2020 06:08:14: 100000000 INFO @ Thu, 16 Apr 2020 06:08:14: 105000000 INFO @ Thu, 16 Apr 2020 06:08:15: 95000000 INFO @ Thu, 16 Apr 2020 06:08:20: 101000000 INFO @ Thu, 16 Apr 2020 06:08:20: 106000000 INFO @ Thu, 16 Apr 2020 06:08:21: 96000000 INFO @ Thu, 16 Apr 2020 06:08:26: 102000000 INFO @ Thu, 16 Apr 2020 06:08:26: 107000000 INFO @ Thu, 16 Apr 2020 06:08:27: 97000000 INFO @ Thu, 16 Apr 2020 06:08:32: 103000000 INFO @ Thu, 16 Apr 2020 06:08:32: 108000000 INFO @ Thu, 16 Apr 2020 06:08:33: 98000000 INFO @ Thu, 16 Apr 2020 06:08:37: 104000000 INFO @ Thu, 16 Apr 2020 06:08:38: 109000000 INFO @ Thu, 16 Apr 2020 06:08:39: 99000000 INFO @ Thu, 16 Apr 2020 06:08:43: 105000000 INFO @ Thu, 16 Apr 2020 06:08:44: 110000000 INFO @ Thu, 16 Apr 2020 06:08:45: 100000000 INFO @ Thu, 16 Apr 2020 06:08:49: 106000000 INFO @ Thu, 16 Apr 2020 06:08:50: 111000000 INFO @ Thu, 16 Apr 2020 06:08:51: 101000000 INFO @ Thu, 16 Apr 2020 06:08:55: 107000000 INFO @ Thu, 16 Apr 2020 06:08:56: 112000000 INFO @ Thu, 16 Apr 2020 06:08:56: 102000000 INFO @ Thu, 16 Apr 2020 06:09:01: 108000000 INFO @ Thu, 16 Apr 2020 06:09:02: 113000000 INFO @ Thu, 16 Apr 2020 06:09:02: 103000000 INFO @ Thu, 16 Apr 2020 06:09:07: 109000000 INFO @ Thu, 16 Apr 2020 06:09:08: 114000000 INFO @ Thu, 16 Apr 2020 06:09:08: 104000000 INFO @ Thu, 16 Apr 2020 06:09:13: 110000000 INFO @ Thu, 16 Apr 2020 06:09:14: 115000000 INFO @ Thu, 16 Apr 2020 06:09:14: 105000000 INFO @ Thu, 16 Apr 2020 06:09:19: 111000000 INFO @ Thu, 16 Apr 2020 06:09:19: 116000000 INFO @ Thu, 16 Apr 2020 06:09:20: 106000000 INFO @ Thu, 16 Apr 2020 06:09:24: 112000000 INFO @ Thu, 16 Apr 2020 06:09:25: 117000000 INFO @ Thu, 16 Apr 2020 06:09:26: 107000000 INFO @ Thu, 16 Apr 2020 06:09:30: 113000000 INFO @ Thu, 16 Apr 2020 06:09:31: 118000000 INFO @ Thu, 16 Apr 2020 06:09:32: 108000000 INFO @ Thu, 16 Apr 2020 06:09:36: 114000000 INFO @ Thu, 16 Apr 2020 06:09:37: 119000000 INFO @ Thu, 16 Apr 2020 06:09:38: 109000000 INFO @ Thu, 16 Apr 2020 06:09:42: 115000000 INFO @ Thu, 16 Apr 2020 06:09:43: 120000000 INFO @ Thu, 16 Apr 2020 06:09:44: 110000000 INFO @ Thu, 16 Apr 2020 06:09:48: 116000000 INFO @ Thu, 16 Apr 2020 06:09:49: 121000000 INFO @ Thu, 16 Apr 2020 06:09:50: 111000000 INFO @ Thu, 16 Apr 2020 06:09:54: 117000000 INFO @ Thu, 16 Apr 2020 06:09:55: 122000000 INFO @ Thu, 16 Apr 2020 06:09:56: 112000000 INFO @ Thu, 16 Apr 2020 06:10:00: 118000000 INFO @ Thu, 16 Apr 2020 06:10:01: 123000000 INFO @ Thu, 16 Apr 2020 06:10:02: 113000000 INFO @ Thu, 16 Apr 2020 06:10:06: 119000000 INFO @ Thu, 16 Apr 2020 06:10:07: 124000000 INFO @ Thu, 16 Apr 2020 06:10:08: 114000000 INFO @ Thu, 16 Apr 2020 06:10:12: 120000000 INFO @ Thu, 16 Apr 2020 06:10:13: 125000000 INFO @ Thu, 16 Apr 2020 06:10:14: 115000000 INFO @ Thu, 16 Apr 2020 06:10:18: 121000000 INFO @ Thu, 16 Apr 2020 06:10:19: 126000000 INFO @ Thu, 16 Apr 2020 06:10:20: 116000000 INFO @ Thu, 16 Apr 2020 06:10:24: 122000000 INFO @ Thu, 16 Apr 2020 06:10:25: 127000000 INFO @ Thu, 16 Apr 2020 06:10:26: 117000000 INFO @ Thu, 16 Apr 2020 06:10:30: 123000000 INFO @ Thu, 16 Apr 2020 06:10:31: 128000000 INFO @ Thu, 16 Apr 2020 06:10:32: 118000000 INFO @ Thu, 16 Apr 2020 06:10:36: 124000000 INFO @ Thu, 16 Apr 2020 06:10:37: 129000000 INFO @ Thu, 16 Apr 2020 06:10:38: 119000000 INFO @ Thu, 16 Apr 2020 06:10:42: 125000000 INFO @ Thu, 16 Apr 2020 06:10:43: 130000000 INFO @ Thu, 16 Apr 2020 06:10:44: 120000000 INFO @ Thu, 16 Apr 2020 06:10:47: 126000000 INFO @ Thu, 16 Apr 2020 06:10:48: 131000000 INFO @ Thu, 16 Apr 2020 06:10:50: 121000000 INFO @ Thu, 16 Apr 2020 06:10:53: 127000000 INFO @ Thu, 16 Apr 2020 06:10:54: 132000000 INFO @ Thu, 16 Apr 2020 06:10:56: 122000000 INFO @ Thu, 16 Apr 2020 06:10:59: 128000000 INFO @ Thu, 16 Apr 2020 06:11:00: 133000000 INFO @ Thu, 16 Apr 2020 06:11:02: 123000000 INFO @ Thu, 16 Apr 2020 06:11:05: 129000000 INFO @ Thu, 16 Apr 2020 06:11:06: 134000000 INFO @ Thu, 16 Apr 2020 06:11:08: 124000000 INFO @ Thu, 16 Apr 2020 06:11:11: 130000000 INFO @ Thu, 16 Apr 2020 06:11:12: 135000000 INFO @ Thu, 16 Apr 2020 06:11:14: 125000000 INFO @ Thu, 16 Apr 2020 06:11:17: 131000000 INFO @ Thu, 16 Apr 2020 06:11:18: 136000000 INFO @ Thu, 16 Apr 2020 06:11:19: 126000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Thu, 16 Apr 2020 06:11:22: 132000000 INFO @ Thu, 16 Apr 2020 06:11:24: 137000000 INFO @ Thu, 16 Apr 2020 06:11:25: 127000000 INFO @ Thu, 16 Apr 2020 06:11:28: 133000000 INFO @ Thu, 16 Apr 2020 06:11:30: 138000000 INFO @ Thu, 16 Apr 2020 06:11:31: 128000000 INFO @ Thu, 16 Apr 2020 06:11:34: 134000000 INFO @ Thu, 16 Apr 2020 06:11:35: 139000000 INFO @ Thu, 16 Apr 2020 06:11:37: 129000000 INFO @ Thu, 16 Apr 2020 06:11:40: 135000000 INFO @ Thu, 16 Apr 2020 06:11:41: 140000000 INFO @ Thu, 16 Apr 2020 06:11:43: 130000000 INFO @ Thu, 16 Apr 2020 06:11:46: 136000000 INFO @ Thu, 16 Apr 2020 06:11:47: 141000000 INFO @ Thu, 16 Apr 2020 06:11:49: 131000000 INFO @ Thu, 16 Apr 2020 06:11:52: 137000000 INFO @ Thu, 16 Apr 2020 06:11:53: 142000000 INFO @ Thu, 16 Apr 2020 06:11:55: 132000000 INFO @ Thu, 16 Apr 2020 06:11:56: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 06:11:56: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 06:11:56: #1 total tags in treatment: 69746615 INFO @ Thu, 16 Apr 2020 06:11:56: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 06:11:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 06:11:58: #1 tags after filtering in treatment: 41520864 INFO @ Thu, 16 Apr 2020 06:11:58: #1 Redundant rate of treatment: 0.40 INFO @ Thu, 16 Apr 2020 06:11:58: #1 finished! INFO @ Thu, 16 Apr 2020 06:11:58: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 06:11:58: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 06:11:58: 138000000 INFO @ Thu, 16 Apr 2020 06:12:00: #2 number of paired peaks: 1481 INFO @ Thu, 16 Apr 2020 06:12:00: start model_add_line... INFO @ Thu, 16 Apr 2020 06:12:01: start X-correlation... INFO @ Thu, 16 Apr 2020 06:12:01: end of X-cor INFO @ Thu, 16 Apr 2020 06:12:01: #2 finished! INFO @ Thu, 16 Apr 2020 06:12:01: #2 predicted fragment length is 166 bps INFO @ Thu, 16 Apr 2020 06:12:01: #2 alternative fragment length(s) may be 4,166 bps INFO @ Thu, 16 Apr 2020 06:12:01: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.05_model.r INFO @ Thu, 16 Apr 2020 06:12:01: #3 Call peaks... INFO @ Thu, 16 Apr 2020 06:12:01: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 06:12:01: 133000000 INFO @ Thu, 16 Apr 2020 06:12:03: 139000000 INFO @ Thu, 16 Apr 2020 06:12:07: 134000000 INFO @ Thu, 16 Apr 2020 06:12:09: 140000000 INFO @ Thu, 16 Apr 2020 06:12:12: 135000000 INFO @ Thu, 16 Apr 2020 06:12:15: 141000000 INFO @ Thu, 16 Apr 2020 06:12:18: 136000000 INFO @ Thu, 16 Apr 2020 06:12:20: 142000000 INFO @ Thu, 16 Apr 2020 06:12:24: 137000000 INFO @ Thu, 16 Apr 2020 06:12:24: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 06:12:24: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 06:12:24: #1 total tags in treatment: 69746615 INFO @ Thu, 16 Apr 2020 06:12:24: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 06:12:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 06:12:25: #1 tags after filtering in treatment: 41520864 INFO @ Thu, 16 Apr 2020 06:12:25: #1 Redundant rate of treatment: 0.40 INFO @ Thu, 16 Apr 2020 06:12:25: #1 finished! INFO @ Thu, 16 Apr 2020 06:12:25: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 06:12:25: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 06:12:28: #2 number of paired peaks: 1481 INFO @ Thu, 16 Apr 2020 06:12:28: start model_add_line... INFO @ Thu, 16 Apr 2020 06:12:28: start X-correlation... INFO @ Thu, 16 Apr 2020 06:12:28: end of X-cor INFO @ Thu, 16 Apr 2020 06:12:28: #2 finished! INFO @ Thu, 16 Apr 2020 06:12:28: #2 predicted fragment length is 166 bps INFO @ Thu, 16 Apr 2020 06:12:28: #2 alternative fragment length(s) may be 4,166 bps INFO @ Thu, 16 Apr 2020 06:12:28: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.10_model.r INFO @ Thu, 16 Apr 2020 06:12:28: #3 Call peaks... INFO @ Thu, 16 Apr 2020 06:12:28: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 06:12:29: 138000000 INFO @ Thu, 16 Apr 2020 06:12:34: 139000000 INFO @ Thu, 16 Apr 2020 06:12:39: 140000000 INFO @ Thu, 16 Apr 2020 06:12:44: 141000000 INFO @ Thu, 16 Apr 2020 06:12:49: 142000000 INFO @ Thu, 16 Apr 2020 06:12:53: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 06:12:53: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 06:12:53: #1 total tags in treatment: 69746615 INFO @ Thu, 16 Apr 2020 06:12:53: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 06:12:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 06:12:54: #1 tags after filtering in treatment: 41520864 INFO @ Thu, 16 Apr 2020 06:12:54: #1 Redundant rate of treatment: 0.40 INFO @ Thu, 16 Apr 2020 06:12:54: #1 finished! INFO @ Thu, 16 Apr 2020 06:12:54: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 06:12:54: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 06:12:57: #2 number of paired peaks: 1481 INFO @ Thu, 16 Apr 2020 06:12:57: start model_add_line... INFO @ Thu, 16 Apr 2020 06:12:57: start X-correlation... INFO @ Thu, 16 Apr 2020 06:12:57: end of X-cor INFO @ Thu, 16 Apr 2020 06:12:57: #2 finished! INFO @ Thu, 16 Apr 2020 06:12:57: #2 predicted fragment length is 166 bps INFO @ Thu, 16 Apr 2020 06:12:57: #2 alternative fragment length(s) may be 4,166 bps INFO @ Thu, 16 Apr 2020 06:12:57: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.20_model.r INFO @ Thu, 16 Apr 2020 06:12:57: #3 Call peaks... INFO @ Thu, 16 Apr 2020 06:12:57: #3 Pre-compute pvalue-qvalue table... BigWig に変換しました。 INFO @ Thu, 16 Apr 2020 06:13:19: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 06:13:50: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 06:13:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.05_peaks.xls INFO @ Thu, 16 Apr 2020 06:13:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 06:13:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.05_summits.bed INFO @ Thu, 16 Apr 2020 06:13:55: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (8343 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 06:14:20: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 06:14:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.10_peaks.xls INFO @ Thu, 16 Apr 2020 06:14:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 06:14:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.10_summits.bed INFO @ Thu, 16 Apr 2020 06:14:27: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (7716 records, 4 fields): 8 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 06:14:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.20_peaks.xls INFO @ Thu, 16 Apr 2020 06:14:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 06:14:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416203/SRX5416203.20_summits.bed INFO @ Thu, 16 Apr 2020 06:14:57: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (6863 records, 4 fields): 8 millis CompletedMACS2peakCalling