Job ID = 5720825 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-04-15T17:14:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:16:48 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:25:20 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2020-04-15T17:26:52 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 80,108,263 reads read : 160,216,526 reads written : 160,216,526 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:34:26 80108263 reads; of these: 80108263 (100.00%) were paired; of these: 5991645 (7.48%) aligned concordantly 0 times 64652012 (80.71%) aligned concordantly exactly 1 time 9464606 (11.81%) aligned concordantly >1 times ---- 5991645 pairs aligned concordantly 0 times; of these: 234233 (3.91%) aligned discordantly 1 time ---- 5757412 pairs aligned 0 times concordantly or discordantly; of these: 11514824 mates make up the pairs; of these: 8317337 (72.23%) aligned 0 times 2369413 (20.58%) aligned exactly 1 time 828074 (7.19%) aligned >1 times 94.81% overall alignment rate Time searching: 01:34:26 Overall time: 01:34:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 35980278 / 74309274 = 0.4842 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:35:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:35:28: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:35:28: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:35:33: 1000000 INFO @ Thu, 16 Apr 2020 04:35:39: 2000000 INFO @ Thu, 16 Apr 2020 04:35:45: 3000000 INFO @ Thu, 16 Apr 2020 04:35:51: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:35:57: 5000000 INFO @ Thu, 16 Apr 2020 04:35:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:35:58: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:35:58: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:36:03: 6000000 INFO @ Thu, 16 Apr 2020 04:36:04: 1000000 INFO @ Thu, 16 Apr 2020 04:36:10: 7000000 INFO @ Thu, 16 Apr 2020 04:36:11: 2000000 INFO @ Thu, 16 Apr 2020 04:36:16: 8000000 INFO @ Thu, 16 Apr 2020 04:36:17: 3000000 INFO @ Thu, 16 Apr 2020 04:36:22: 9000000 INFO @ Thu, 16 Apr 2020 04:36:23: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Thu, 16 Apr 2020 04:36:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 16 Apr 2020 04:36:28: #1 read tag files... INFO @ Thu, 16 Apr 2020 04:36:28: #1 read treatment tags... INFO @ Thu, 16 Apr 2020 04:36:28: 10000000 INFO @ Thu, 16 Apr 2020 04:36:30: 5000000 INFO @ Thu, 16 Apr 2020 04:36:34: 1000000 INFO @ Thu, 16 Apr 2020 04:36:34: 11000000 INFO @ Thu, 16 Apr 2020 04:36:36: 6000000 INFO @ Thu, 16 Apr 2020 04:36:40: 2000000 INFO @ Thu, 16 Apr 2020 04:36:41: 12000000 INFO @ Thu, 16 Apr 2020 04:36:42: 7000000 INFO @ Thu, 16 Apr 2020 04:36:45: 3000000 INFO @ Thu, 16 Apr 2020 04:36:47: 13000000 INFO @ Thu, 16 Apr 2020 04:36:49: 8000000 INFO @ Thu, 16 Apr 2020 04:36:51: 4000000 INFO @ Thu, 16 Apr 2020 04:36:53: 14000000 INFO @ Thu, 16 Apr 2020 04:36:55: 9000000 INFO @ Thu, 16 Apr 2020 04:36:57: 5000000 INFO @ Thu, 16 Apr 2020 04:37:00: 15000000 INFO @ Thu, 16 Apr 2020 04:37:01: 10000000 INFO @ Thu, 16 Apr 2020 04:37:03: 6000000 INFO @ Thu, 16 Apr 2020 04:37:06: 16000000 INFO @ Thu, 16 Apr 2020 04:37:08: 11000000 INFO @ Thu, 16 Apr 2020 04:37:08: 7000000 INFO @ Thu, 16 Apr 2020 04:37:12: 17000000 INFO @ Thu, 16 Apr 2020 04:37:14: 8000000 INFO @ Thu, 16 Apr 2020 04:37:14: 12000000 INFO @ Thu, 16 Apr 2020 04:37:18: 18000000 INFO @ Thu, 16 Apr 2020 04:37:20: 9000000 INFO @ Thu, 16 Apr 2020 04:37:20: 13000000 INFO @ Thu, 16 Apr 2020 04:37:25: 19000000 INFO @ Thu, 16 Apr 2020 04:37:26: 10000000 INFO @ Thu, 16 Apr 2020 04:37:27: 14000000 INFO @ Thu, 16 Apr 2020 04:37:31: 20000000 INFO @ Thu, 16 Apr 2020 04:37:31: 11000000 INFO @ Thu, 16 Apr 2020 04:37:33: 15000000 INFO @ Thu, 16 Apr 2020 04:37:37: 12000000 INFO @ Thu, 16 Apr 2020 04:37:37: 21000000 INFO @ Thu, 16 Apr 2020 04:37:39: 16000000 INFO @ Thu, 16 Apr 2020 04:37:43: 13000000 INFO @ Thu, 16 Apr 2020 04:37:44: 22000000 INFO @ Thu, 16 Apr 2020 04:37:46: 17000000 INFO @ Thu, 16 Apr 2020 04:37:48: 14000000 INFO @ Thu, 16 Apr 2020 04:37:50: 23000000 INFO @ Thu, 16 Apr 2020 04:37:52: 18000000 INFO @ Thu, 16 Apr 2020 04:37:54: 15000000 INFO @ Thu, 16 Apr 2020 04:37:56: 24000000 INFO @ Thu, 16 Apr 2020 04:37:58: 19000000 INFO @ Thu, 16 Apr 2020 04:38:00: 16000000 INFO @ Thu, 16 Apr 2020 04:38:02: 25000000 INFO @ Thu, 16 Apr 2020 04:38:04: 20000000 INFO @ Thu, 16 Apr 2020 04:38:05: 17000000 INFO @ Thu, 16 Apr 2020 04:38:09: 26000000 INFO @ Thu, 16 Apr 2020 04:38:10: 21000000 INFO @ Thu, 16 Apr 2020 04:38:11: 18000000 INFO @ Thu, 16 Apr 2020 04:38:16: 27000000 INFO @ Thu, 16 Apr 2020 04:38:16: 22000000 INFO @ Thu, 16 Apr 2020 04:38:17: 19000000 INFO @ Thu, 16 Apr 2020 04:38:22: 28000000 INFO @ Thu, 16 Apr 2020 04:38:22: 23000000 INFO @ Thu, 16 Apr 2020 04:38:22: 20000000 INFO @ Thu, 16 Apr 2020 04:38:27: 29000000 INFO @ Thu, 16 Apr 2020 04:38:28: 24000000 INFO @ Thu, 16 Apr 2020 04:38:28: 21000000 INFO @ Thu, 16 Apr 2020 04:38:33: 30000000 INFO @ Thu, 16 Apr 2020 04:38:33: 25000000 INFO @ Thu, 16 Apr 2020 04:38:34: 22000000 INFO @ Thu, 16 Apr 2020 04:38:39: 26000000 INFO @ Thu, 16 Apr 2020 04:38:39: 31000000 INFO @ Thu, 16 Apr 2020 04:38:40: 23000000 INFO @ Thu, 16 Apr 2020 04:38:45: 27000000 INFO @ Thu, 16 Apr 2020 04:38:45: 24000000 INFO @ Thu, 16 Apr 2020 04:38:45: 32000000 INFO @ Thu, 16 Apr 2020 04:38:51: 28000000 INFO @ Thu, 16 Apr 2020 04:38:51: 25000000 INFO @ Thu, 16 Apr 2020 04:38:51: 33000000 INFO @ Thu, 16 Apr 2020 04:38:57: 26000000 INFO @ Thu, 16 Apr 2020 04:38:57: 29000000 INFO @ Thu, 16 Apr 2020 04:38:57: 34000000 INFO @ Thu, 16 Apr 2020 04:39:02: 27000000 INFO @ Thu, 16 Apr 2020 04:39:03: 35000000 INFO @ Thu, 16 Apr 2020 04:39:03: 30000000 INFO @ Thu, 16 Apr 2020 04:39:08: 28000000 INFO @ Thu, 16 Apr 2020 04:39:09: 36000000 INFO @ Thu, 16 Apr 2020 04:39:09: 31000000 INFO @ Thu, 16 Apr 2020 04:39:14: 29000000 INFO @ Thu, 16 Apr 2020 04:39:14: 37000000 INFO @ Thu, 16 Apr 2020 04:39:16: 32000000 INFO @ Thu, 16 Apr 2020 04:39:19: 30000000 INFO @ Thu, 16 Apr 2020 04:39:20: 38000000 INFO @ Thu, 16 Apr 2020 04:39:22: 33000000 INFO @ Thu, 16 Apr 2020 04:39:25: 31000000 INFO @ Thu, 16 Apr 2020 04:39:26: 39000000 INFO @ Thu, 16 Apr 2020 04:39:28: 34000000 INFO @ Thu, 16 Apr 2020 04:39:31: 32000000 INFO @ Thu, 16 Apr 2020 04:39:32: 40000000 INFO @ Thu, 16 Apr 2020 04:39:34: 35000000 INFO @ Thu, 16 Apr 2020 04:39:36: 33000000 INFO @ Thu, 16 Apr 2020 04:39:37: 41000000 INFO @ Thu, 16 Apr 2020 04:39:40: 36000000 INFO @ Thu, 16 Apr 2020 04:39:42: 34000000 INFO @ Thu, 16 Apr 2020 04:39:43: 42000000 INFO @ Thu, 16 Apr 2020 04:39:46: 37000000 INFO @ Thu, 16 Apr 2020 04:39:48: 35000000 INFO @ Thu, 16 Apr 2020 04:39:49: 43000000 INFO @ Thu, 16 Apr 2020 04:39:52: 38000000 INFO @ Thu, 16 Apr 2020 04:39:53: 36000000 INFO @ Thu, 16 Apr 2020 04:39:55: 44000000 INFO @ Thu, 16 Apr 2020 04:39:58: 39000000 INFO @ Thu, 16 Apr 2020 04:39:59: 37000000 INFO @ Thu, 16 Apr 2020 04:40:00: 45000000 INFO @ Thu, 16 Apr 2020 04:40:03: 40000000 INFO @ Thu, 16 Apr 2020 04:40:04: 38000000 INFO @ Thu, 16 Apr 2020 04:40:06: 46000000 INFO @ Thu, 16 Apr 2020 04:40:09: 41000000 INFO @ Thu, 16 Apr 2020 04:40:10: 39000000 INFO @ Thu, 16 Apr 2020 04:40:11: 47000000 INFO @ Thu, 16 Apr 2020 04:40:16: 40000000 INFO @ Thu, 16 Apr 2020 04:40:16: 42000000 INFO @ Thu, 16 Apr 2020 04:40:17: 48000000 INFO @ Thu, 16 Apr 2020 04:40:22: 41000000 INFO @ Thu, 16 Apr 2020 04:40:22: 43000000 INFO @ Thu, 16 Apr 2020 04:40:23: 49000000 INFO @ Thu, 16 Apr 2020 04:40:27: 42000000 INFO @ Thu, 16 Apr 2020 04:40:29: 50000000 INFO @ Thu, 16 Apr 2020 04:40:29: 44000000 INFO @ Thu, 16 Apr 2020 04:40:33: 43000000 INFO @ Thu, 16 Apr 2020 04:40:34: 51000000 INFO @ Thu, 16 Apr 2020 04:40:35: 45000000 INFO @ Thu, 16 Apr 2020 04:40:39: 44000000 INFO @ Thu, 16 Apr 2020 04:40:40: 52000000 INFO @ Thu, 16 Apr 2020 04:40:41: 46000000 INFO @ Thu, 16 Apr 2020 04:40:45: 45000000 INFO @ Thu, 16 Apr 2020 04:40:46: 53000000 INFO @ Thu, 16 Apr 2020 04:40:47: 47000000 INFO @ Thu, 16 Apr 2020 04:40:50: 46000000 INFO @ Thu, 16 Apr 2020 04:40:51: 54000000 INFO @ Thu, 16 Apr 2020 04:40:52: 48000000 INFO @ Thu, 16 Apr 2020 04:40:55: 47000000 INFO @ Thu, 16 Apr 2020 04:40:57: 55000000 INFO @ Thu, 16 Apr 2020 04:40:58: 49000000 INFO @ Thu, 16 Apr 2020 04:41:01: 48000000 INFO @ Thu, 16 Apr 2020 04:41:02: 56000000 INFO @ Thu, 16 Apr 2020 04:41:03: 50000000 INFO @ Thu, 16 Apr 2020 04:41:07: 49000000 INFO @ Thu, 16 Apr 2020 04:41:07: 57000000 INFO @ Thu, 16 Apr 2020 04:41:09: 51000000 INFO @ Thu, 16 Apr 2020 04:41:12: 50000000 INFO @ Thu, 16 Apr 2020 04:41:13: 58000000 INFO @ Thu, 16 Apr 2020 04:41:14: 52000000 INFO @ Thu, 16 Apr 2020 04:41:17: 51000000 INFO @ Thu, 16 Apr 2020 04:41:18: 59000000 INFO @ Thu, 16 Apr 2020 04:41:20: 53000000 INFO @ Thu, 16 Apr 2020 04:41:23: 52000000 INFO @ Thu, 16 Apr 2020 04:41:24: 60000000 INFO @ Thu, 16 Apr 2020 04:41:26: 54000000 INFO @ Thu, 16 Apr 2020 04:41:29: 53000000 INFO @ Thu, 16 Apr 2020 04:41:30: 61000000 INFO @ Thu, 16 Apr 2020 04:41:32: 55000000 INFO @ Thu, 16 Apr 2020 04:41:34: 54000000 INFO @ Thu, 16 Apr 2020 04:41:36: 62000000 INFO @ Thu, 16 Apr 2020 04:41:38: 56000000 INFO @ Thu, 16 Apr 2020 04:41:40: 55000000 INFO @ Thu, 16 Apr 2020 04:41:41: 63000000 INFO @ Thu, 16 Apr 2020 04:41:43: 57000000 INFO @ Thu, 16 Apr 2020 04:41:45: 56000000 INFO @ Thu, 16 Apr 2020 04:41:47: 64000000 INFO @ Thu, 16 Apr 2020 04:41:49: 58000000 INFO @ Thu, 16 Apr 2020 04:41:51: 57000000 INFO @ Thu, 16 Apr 2020 04:41:53: 65000000 INFO @ Thu, 16 Apr 2020 04:41:54: 59000000 INFO @ Thu, 16 Apr 2020 04:41:56: 58000000 INFO @ Thu, 16 Apr 2020 04:41:58: 66000000 INFO @ Thu, 16 Apr 2020 04:42:01: 60000000 INFO @ Thu, 16 Apr 2020 04:42:02: 59000000 INFO @ Thu, 16 Apr 2020 04:42:04: 67000000 INFO @ Thu, 16 Apr 2020 04:42:07: 61000000 INFO @ Thu, 16 Apr 2020 04:42:08: 60000000 INFO @ Thu, 16 Apr 2020 04:42:10: 68000000 INFO @ Thu, 16 Apr 2020 04:42:13: 61000000 INFO @ Thu, 16 Apr 2020 04:42:14: 62000000 INFO @ Thu, 16 Apr 2020 04:42:16: 69000000 INFO @ Thu, 16 Apr 2020 04:42:19: 62000000 INFO @ Thu, 16 Apr 2020 04:42:20: 63000000 INFO @ Thu, 16 Apr 2020 04:42:21: 70000000 INFO @ Thu, 16 Apr 2020 04:42:25: 63000000 INFO @ Thu, 16 Apr 2020 04:42:27: 64000000 INFO @ Thu, 16 Apr 2020 04:42:27: 71000000 INFO @ Thu, 16 Apr 2020 04:42:31: 64000000 INFO @ Thu, 16 Apr 2020 04:42:33: 72000000 INFO @ Thu, 16 Apr 2020 04:42:33: 65000000 INFO @ Thu, 16 Apr 2020 04:42:36: 65000000 INFO @ Thu, 16 Apr 2020 04:42:38: 73000000 INFO @ Thu, 16 Apr 2020 04:42:39: 66000000 INFO @ Thu, 16 Apr 2020 04:42:42: 66000000 INFO @ Thu, 16 Apr 2020 04:42:44: 74000000 INFO @ Thu, 16 Apr 2020 04:42:45: 67000000 INFO @ Thu, 16 Apr 2020 04:42:48: 67000000 INFO @ Thu, 16 Apr 2020 04:42:49: 75000000 INFO @ Thu, 16 Apr 2020 04:42:52: 68000000 INFO @ Thu, 16 Apr 2020 04:42:53: 68000000 INFO @ Thu, 16 Apr 2020 04:42:55: 76000000 INFO @ Thu, 16 Apr 2020 04:42:58: 69000000 INFO @ Thu, 16 Apr 2020 04:42:59: 69000000 INFO @ Thu, 16 Apr 2020 04:43:00: 77000000 INFO @ Thu, 16 Apr 2020 04:43:04: 70000000 INFO @ Thu, 16 Apr 2020 04:43:05: 70000000 INFO @ Thu, 16 Apr 2020 04:43:06: 78000000 INFO @ Thu, 16 Apr 2020 04:43:10: 71000000 INFO @ Thu, 16 Apr 2020 04:43:11: 71000000 INFO @ Thu, 16 Apr 2020 04:43:12: 79000000 INFO @ Thu, 16 Apr 2020 04:43:16: 72000000 INFO @ Thu, 16 Apr 2020 04:43:17: 72000000 INFO @ Thu, 16 Apr 2020 04:43:17: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:43:17: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:43:17: #1 total tags in treatment: 38239559 INFO @ Thu, 16 Apr 2020 04:43:17: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:43:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:43:18: #1 tags after filtering in treatment: 31979603 INFO @ Thu, 16 Apr 2020 04:43:18: #1 Redundant rate of treatment: 0.16 INFO @ Thu, 16 Apr 2020 04:43:18: #1 finished! INFO @ Thu, 16 Apr 2020 04:43:18: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:43:18: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:43:20: #2 number of paired peaks: 121 WARNING @ Thu, 16 Apr 2020 04:43:20: Fewer paired peaks (121) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 121 pairs to build model! INFO @ Thu, 16 Apr 2020 04:43:20: start model_add_line... INFO @ Thu, 16 Apr 2020 04:43:20: start X-correlation... INFO @ Thu, 16 Apr 2020 04:43:20: end of X-cor INFO @ Thu, 16 Apr 2020 04:43:20: #2 finished! INFO @ Thu, 16 Apr 2020 04:43:20: #2 predicted fragment length is 166 bps INFO @ Thu, 16 Apr 2020 04:43:20: #2 alternative fragment length(s) may be 3,166 bps INFO @ Thu, 16 Apr 2020 04:43:20: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.05_model.r INFO @ Thu, 16 Apr 2020 04:43:20: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:43:20: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:43:22: 73000000 INFO @ Thu, 16 Apr 2020 04:43:23: 73000000 INFO @ Thu, 16 Apr 2020 04:43:28: 74000000 INFO @ Thu, 16 Apr 2020 04:43:29: 74000000 INFO @ Thu, 16 Apr 2020 04:43:35: 75000000 INFO @ Thu, 16 Apr 2020 04:43:35: 75000000 INFO @ Thu, 16 Apr 2020 04:43:41: 76000000 INFO @ Thu, 16 Apr 2020 04:43:41: 76000000 INFO @ Thu, 16 Apr 2020 04:43:47: 77000000 INFO @ Thu, 16 Apr 2020 04:43:48: 77000000 INFO @ Thu, 16 Apr 2020 04:43:54: 78000000 INFO @ Thu, 16 Apr 2020 04:43:54: 78000000 INFO @ Thu, 16 Apr 2020 04:44:00: 79000000 INFO @ Thu, 16 Apr 2020 04:44:01: 79000000 INFO @ Thu, 16 Apr 2020 04:44:06: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:44:06: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:44:06: #1 total tags in treatment: 38239559 INFO @ Thu, 16 Apr 2020 04:44:06: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:44:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:44:07: #1 tag size is determined as 49 bps INFO @ Thu, 16 Apr 2020 04:44:07: #1 tag size = 49 INFO @ Thu, 16 Apr 2020 04:44:07: #1 total tags in treatment: 38239559 INFO @ Thu, 16 Apr 2020 04:44:07: #1 user defined the maximum tags... INFO @ Thu, 16 Apr 2020 04:44:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 16 Apr 2020 04:44:07: #1 tags after filtering in treatment: 31979603 INFO @ Thu, 16 Apr 2020 04:44:07: #1 Redundant rate of treatment: 0.16 INFO @ Thu, 16 Apr 2020 04:44:07: #1 finished! INFO @ Thu, 16 Apr 2020 04:44:07: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:44:07: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:44:08: #1 tags after filtering in treatment: 31979603 INFO @ Thu, 16 Apr 2020 04:44:08: #1 Redundant rate of treatment: 0.16 INFO @ Thu, 16 Apr 2020 04:44:08: #1 finished! INFO @ Thu, 16 Apr 2020 04:44:08: #2 Build Peak Model... INFO @ Thu, 16 Apr 2020 04:44:08: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 16 Apr 2020 04:44:09: #2 number of paired peaks: 121 WARNING @ Thu, 16 Apr 2020 04:44:09: Fewer paired peaks (121) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 121 pairs to build model! INFO @ Thu, 16 Apr 2020 04:44:09: start model_add_line... INFO @ Thu, 16 Apr 2020 04:44:09: start X-correlation... INFO @ Thu, 16 Apr 2020 04:44:09: end of X-cor INFO @ Thu, 16 Apr 2020 04:44:09: #2 finished! INFO @ Thu, 16 Apr 2020 04:44:09: #2 predicted fragment length is 166 bps INFO @ Thu, 16 Apr 2020 04:44:09: #2 alternative fragment length(s) may be 3,166 bps INFO @ Thu, 16 Apr 2020 04:44:09: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.10_model.r INFO @ Thu, 16 Apr 2020 04:44:09: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:44:09: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:44:10: #2 number of paired peaks: 121 WARNING @ Thu, 16 Apr 2020 04:44:10: Fewer paired peaks (121) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 121 pairs to build model! INFO @ Thu, 16 Apr 2020 04:44:10: start model_add_line... INFO @ Thu, 16 Apr 2020 04:44:10: start X-correlation... INFO @ Thu, 16 Apr 2020 04:44:10: end of X-cor INFO @ Thu, 16 Apr 2020 04:44:10: #2 finished! INFO @ Thu, 16 Apr 2020 04:44:10: #2 predicted fragment length is 166 bps INFO @ Thu, 16 Apr 2020 04:44:10: #2 alternative fragment length(s) may be 3,166 bps INFO @ Thu, 16 Apr 2020 04:44:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.20_model.r INFO @ Thu, 16 Apr 2020 04:44:10: #3 Call peaks... INFO @ Thu, 16 Apr 2020 04:44:10: #3 Pre-compute pvalue-qvalue table... INFO @ Thu, 16 Apr 2020 04:44:23: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:44:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.05_peaks.xls INFO @ Thu, 16 Apr 2020 04:44:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.05_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:44:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.05_summits.bed INFO @ Thu, 16 Apr 2020 04:44:53: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (11079 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:45:11: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:45:12: #3 Call peaks for each chromosome... INFO @ Thu, 16 Apr 2020 04:45:40: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.20_peaks.xls INFO @ Thu, 16 Apr 2020 04:45:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.20_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:45:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.20_summits.bed INFO @ Thu, 16 Apr 2020 04:45:40: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (1269 records, 4 fields): 2 millis CompletedMACS2peakCalling INFO @ Thu, 16 Apr 2020 04:45:42: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.10_peaks.xls INFO @ Thu, 16 Apr 2020 04:45:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.10_peaks.narrowPeak INFO @ Thu, 16 Apr 2020 04:45:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX5416200/SRX5416200.10_summits.bed INFO @ Thu, 16 Apr 2020 04:45:42: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (4859 records, 4 fields): 6 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。