Job ID = 1303660 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-06-03T11:28:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:28:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:28:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:28:38 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:30:05 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:36:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:36:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:36:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:36:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:40:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:40:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:40:06 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:44:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:45:49 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:45:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:52:56 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T11:57:33 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T12:02:40 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T12:02:40 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T12:11:50 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 87,438,934 reads read : 174,877,868 reads written : 87,438,934 reads 0-length : 87,438,934 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:43:11 87438934 reads; of these: 87438934 (100.00%) were unpaired; of these: 11720653 (13.40%) aligned 0 times 54647582 (62.50%) aligned exactly 1 time 21070699 (24.10%) aligned >1 times 86.60% overall alignment rate Time searching: 00:43:11 Overall time: 00:43:11 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 38491967 / 75718281 = 0.5084 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 22:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 22:25:24: #1 read tag files... INFO @ Mon, 03 Jun 2019 22:25:24: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 22:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 22:25:24: #1 read tag files... INFO @ Mon, 03 Jun 2019 22:25:24: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 22:25:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 22:25:24: #1 read tag files... INFO @ Mon, 03 Jun 2019 22:25:24: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 22:25:34: 1000000 INFO @ Mon, 03 Jun 2019 22:25:34: 1000000 INFO @ Mon, 03 Jun 2019 22:25:36: 1000000 INFO @ Mon, 03 Jun 2019 22:25:45: 2000000 INFO @ Mon, 03 Jun 2019 22:25:45: 2000000 INFO @ Mon, 03 Jun 2019 22:25:48: 2000000 INFO @ Mon, 03 Jun 2019 22:25:56: 3000000 INFO @ Mon, 03 Jun 2019 22:25:56: 3000000 INFO @ Mon, 03 Jun 2019 22:26:01: 3000000 INFO @ Mon, 03 Jun 2019 22:26:07: 4000000 INFO @ Mon, 03 Jun 2019 22:26:07: 4000000 INFO @ Mon, 03 Jun 2019 22:26:13: 4000000 INFO @ Mon, 03 Jun 2019 22:26:17: 5000000 INFO @ Mon, 03 Jun 2019 22:26:18: 5000000 INFO @ Mon, 03 Jun 2019 22:26:25: 5000000 INFO @ Mon, 03 Jun 2019 22:26:28: 6000000 INFO @ Mon, 03 Jun 2019 22:26:28: 6000000 INFO @ Mon, 03 Jun 2019 22:26:37: 6000000 INFO @ Mon, 03 Jun 2019 22:26:38: 7000000 INFO @ Mon, 03 Jun 2019 22:26:38: 7000000 INFO @ Mon, 03 Jun 2019 22:26:48: 8000000 INFO @ Mon, 03 Jun 2019 22:26:48: 8000000 INFO @ Mon, 03 Jun 2019 22:26:49: 7000000 INFO @ Mon, 03 Jun 2019 22:26:58: 9000000 INFO @ Mon, 03 Jun 2019 22:26:58: 9000000 INFO @ Mon, 03 Jun 2019 22:27:01: 8000000 INFO @ Mon, 03 Jun 2019 22:27:08: 10000000 INFO @ Mon, 03 Jun 2019 22:27:08: 10000000 INFO @ Mon, 03 Jun 2019 22:27:13: 9000000 INFO @ Mon, 03 Jun 2019 22:27:18: 11000000 INFO @ Mon, 03 Jun 2019 22:27:18: 11000000 INFO @ Mon, 03 Jun 2019 22:27:24: 10000000 INFO @ Mon, 03 Jun 2019 22:27:28: 12000000 INFO @ Mon, 03 Jun 2019 22:27:28: 12000000 INFO @ Mon, 03 Jun 2019 22:27:36: 11000000 INFO @ Mon, 03 Jun 2019 22:27:37: 13000000 INFO @ Mon, 03 Jun 2019 22:27:38: 13000000 INFO @ Mon, 03 Jun 2019 22:27:48: 14000000 INFO @ Mon, 03 Jun 2019 22:27:48: 12000000 INFO @ Mon, 03 Jun 2019 22:27:48: 14000000 INFO @ Mon, 03 Jun 2019 22:27:58: 15000000 INFO @ Mon, 03 Jun 2019 22:27:59: 15000000 INFO @ Mon, 03 Jun 2019 22:28:00: 13000000 INFO @ Mon, 03 Jun 2019 22:28:08: 16000000 INFO @ Mon, 03 Jun 2019 22:28:08: 16000000 INFO @ Mon, 03 Jun 2019 22:28:11: 14000000 INFO @ Mon, 03 Jun 2019 22:28:18: 17000000 INFO @ Mon, 03 Jun 2019 22:28:18: 17000000 INFO @ Mon, 03 Jun 2019 22:28:23: 15000000 INFO @ Mon, 03 Jun 2019 22:28:28: 18000000 INFO @ Mon, 03 Jun 2019 22:28:28: 18000000 INFO @ Mon, 03 Jun 2019 22:28:34: 16000000 INFO @ Mon, 03 Jun 2019 22:28:37: 19000000 INFO @ Mon, 03 Jun 2019 22:28:38: 19000000 INFO @ Mon, 03 Jun 2019 22:28:46: 17000000 INFO @ Mon, 03 Jun 2019 22:28:47: 20000000 INFO @ Mon, 03 Jun 2019 22:28:48: 20000000 INFO @ Mon, 03 Jun 2019 22:28:56: 21000000 INFO @ Mon, 03 Jun 2019 22:28:57: 18000000 INFO @ Mon, 03 Jun 2019 22:28:57: 21000000 INFO @ Mon, 03 Jun 2019 22:29:05: 22000000 INFO @ Mon, 03 Jun 2019 22:29:07: 22000000 INFO @ Mon, 03 Jun 2019 22:29:08: 19000000 INFO @ Mon, 03 Jun 2019 22:29:15: 23000000 INFO @ Mon, 03 Jun 2019 22:29:17: 23000000 INFO @ Mon, 03 Jun 2019 22:29:20: 20000000 INFO @ Mon, 03 Jun 2019 22:29:24: 24000000 INFO @ Mon, 03 Jun 2019 22:29:27: 24000000 INFO @ Mon, 03 Jun 2019 22:29:32: 21000000 INFO @ Mon, 03 Jun 2019 22:29:34: 25000000 INFO @ Mon, 03 Jun 2019 22:29:38: 25000000 INFO @ Mon, 03 Jun 2019 22:29:44: 22000000 INFO @ Mon, 03 Jun 2019 22:29:44: 26000000 INFO @ Mon, 03 Jun 2019 22:29:48: 26000000 INFO @ Mon, 03 Jun 2019 22:29:53: 27000000 INFO @ Mon, 03 Jun 2019 22:29:55: 23000000 INFO @ Mon, 03 Jun 2019 22:29:58: 27000000 INFO @ Mon, 03 Jun 2019 22:30:03: 28000000 INFO @ Mon, 03 Jun 2019 22:30:06: 24000000 INFO @ Mon, 03 Jun 2019 22:30:08: 28000000 INFO @ Mon, 03 Jun 2019 22:30:12: 29000000 INFO @ Mon, 03 Jun 2019 22:30:18: 25000000 INFO @ Mon, 03 Jun 2019 22:30:18: 29000000 INFO @ Mon, 03 Jun 2019 22:30:22: 30000000 INFO @ Mon, 03 Jun 2019 22:30:28: 30000000 INFO @ Mon, 03 Jun 2019 22:30:29: 26000000 INFO @ Mon, 03 Jun 2019 22:30:31: 31000000 INFO @ Mon, 03 Jun 2019 22:30:38: 31000000 INFO @ Mon, 03 Jun 2019 22:30:41: 27000000 INFO @ Mon, 03 Jun 2019 22:30:41: 32000000 INFO @ Mon, 03 Jun 2019 22:30:48: 32000000 INFO @ Mon, 03 Jun 2019 22:30:50: 33000000 INFO @ Mon, 03 Jun 2019 22:30:52: 28000000 INFO @ Mon, 03 Jun 2019 22:30:59: 33000000 INFO @ Mon, 03 Jun 2019 22:31:00: 34000000 INFO @ Mon, 03 Jun 2019 22:31:04: 29000000 INFO @ Mon, 03 Jun 2019 22:31:09: 34000000 INFO @ Mon, 03 Jun 2019 22:31:09: 35000000 INFO @ Mon, 03 Jun 2019 22:31:15: 30000000 INFO @ Mon, 03 Jun 2019 22:31:19: 35000000 INFO @ Mon, 03 Jun 2019 22:31:19: 36000000 INFO @ Mon, 03 Jun 2019 22:31:27: 31000000 INFO @ Mon, 03 Jun 2019 22:31:29: 36000000 INFO @ Mon, 03 Jun 2019 22:31:30: 37000000 INFO @ Mon, 03 Jun 2019 22:31:32: #1 tag size is determined as 75 bps INFO @ Mon, 03 Jun 2019 22:31:32: #1 tag size = 75 INFO @ Mon, 03 Jun 2019 22:31:32: #1 total tags in treatment: 37226314 INFO @ Mon, 03 Jun 2019 22:31:32: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 22:31:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 22:31:33: #1 tags after filtering in treatment: 37226314 INFO @ Mon, 03 Jun 2019 22:31:33: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 03 Jun 2019 22:31:33: #1 finished! INFO @ Mon, 03 Jun 2019 22:31:33: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 22:31:33: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 22:31:36: #2 number of paired peaks: 1220 INFO @ Mon, 03 Jun 2019 22:31:36: start model_add_line... INFO @ Mon, 03 Jun 2019 22:31:37: start X-correlation... INFO @ Mon, 03 Jun 2019 22:31:37: end of X-cor INFO @ Mon, 03 Jun 2019 22:31:37: #2 finished! INFO @ Mon, 03 Jun 2019 22:31:37: #2 predicted fragment length is 128 bps INFO @ Mon, 03 Jun 2019 22:31:37: #2 alternative fragment length(s) may be 3,128 bps INFO @ Mon, 03 Jun 2019 22:31:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.05_model.r WARNING @ Mon, 03 Jun 2019 22:31:37: #2 Since the d (128) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 03 Jun 2019 22:31:37: #2 You may need to consider one of the other alternative d(s): 3,128 WARNING @ Mon, 03 Jun 2019 22:31:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 03 Jun 2019 22:31:37: #3 Call peaks... INFO @ Mon, 03 Jun 2019 22:31:37: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 22:31:39: 32000000 INFO @ Mon, 03 Jun 2019 22:31:40: 37000000 INFO @ Mon, 03 Jun 2019 22:31:42: #1 tag size is determined as 75 bps INFO @ Mon, 03 Jun 2019 22:31:42: #1 tag size = 75 INFO @ Mon, 03 Jun 2019 22:31:42: #1 total tags in treatment: 37226314 INFO @ Mon, 03 Jun 2019 22:31:42: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 22:31:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 22:31:43: #1 tags after filtering in treatment: 37226314 INFO @ Mon, 03 Jun 2019 22:31:43: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 03 Jun 2019 22:31:43: #1 finished! INFO @ Mon, 03 Jun 2019 22:31:43: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 22:31:43: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 22:31:46: #2 number of paired peaks: 1220 INFO @ Mon, 03 Jun 2019 22:31:46: start model_add_line... INFO @ Mon, 03 Jun 2019 22:31:47: start X-correlation... INFO @ Mon, 03 Jun 2019 22:31:47: end of X-cor INFO @ Mon, 03 Jun 2019 22:31:47: #2 finished! INFO @ Mon, 03 Jun 2019 22:31:47: #2 predicted fragment length is 128 bps INFO @ Mon, 03 Jun 2019 22:31:47: #2 alternative fragment length(s) may be 3,128 bps INFO @ Mon, 03 Jun 2019 22:31:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.10_model.r WARNING @ Mon, 03 Jun 2019 22:31:47: #2 Since the d (128) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 03 Jun 2019 22:31:47: #2 You may need to consider one of the other alternative d(s): 3,128 WARNING @ Mon, 03 Jun 2019 22:31:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 03 Jun 2019 22:31:47: #3 Call peaks... INFO @ Mon, 03 Jun 2019 22:31:47: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 22:31:51: 33000000 INFO @ Mon, 03 Jun 2019 22:32:02: 34000000 INFO @ Mon, 03 Jun 2019 22:32:12: 35000000 INFO @ Mon, 03 Jun 2019 22:32:24: 36000000 INFO @ Mon, 03 Jun 2019 22:32:35: 37000000 INFO @ Mon, 03 Jun 2019 22:32:37: #1 tag size is determined as 75 bps INFO @ Mon, 03 Jun 2019 22:32:37: #1 tag size = 75 INFO @ Mon, 03 Jun 2019 22:32:37: #1 total tags in treatment: 37226314 INFO @ Mon, 03 Jun 2019 22:32:37: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 22:32:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 22:32:38: #1 tags after filtering in treatment: 37226314 INFO @ Mon, 03 Jun 2019 22:32:38: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 03 Jun 2019 22:32:38: #1 finished! INFO @ Mon, 03 Jun 2019 22:32:38: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 22:32:38: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 22:32:41: #2 number of paired peaks: 1220 INFO @ Mon, 03 Jun 2019 22:32:41: start model_add_line... INFO @ Mon, 03 Jun 2019 22:32:42: start X-correlation... INFO @ Mon, 03 Jun 2019 22:32:42: end of X-cor INFO @ Mon, 03 Jun 2019 22:32:42: #2 finished! INFO @ Mon, 03 Jun 2019 22:32:42: #2 predicted fragment length is 128 bps INFO @ Mon, 03 Jun 2019 22:32:42: #2 alternative fragment length(s) may be 3,128 bps INFO @ Mon, 03 Jun 2019 22:32:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.20_model.r WARNING @ Mon, 03 Jun 2019 22:32:42: #2 Since the d (128) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Mon, 03 Jun 2019 22:32:42: #2 You may need to consider one of the other alternative d(s): 3,128 WARNING @ Mon, 03 Jun 2019 22:32:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Mon, 03 Jun 2019 22:32:42: #3 Call peaks... INFO @ Mon, 03 Jun 2019 22:32:42: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 22:33:11: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 22:33:24: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 22:33:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.05_peaks.xls INFO @ Mon, 03 Jun 2019 22:33:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 22:33:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.05_summits.bed INFO @ Mon, 03 Jun 2019 22:33:51: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (13909 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 22:34:07: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.10_peaks.xls INFO @ Mon, 03 Jun 2019 22:34:08: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 22:34:08: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.10_summits.bed INFO @ Mon, 03 Jun 2019 22:34:08: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (10754 records, 4 fields): 15 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 22:34:16: #3 Call peaks for each chromosome... BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 22:34:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.20_peaks.xls INFO @ Mon, 03 Jun 2019 22:34:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 22:34:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4941150/SRX4941150.20_summits.bed INFO @ Mon, 03 Jun 2019 22:34:55: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (6864 records, 4 fields): 61 millis CompletedMACS2peakCalling BigWig に変換しました。