Job ID = 12265263 SRX = SRX4782829 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 49258830 spots for SRR7948882/SRR7948882.sra Written 49258830 spots for SRR7948882/SRR7948882.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265804 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 01:18:47 49258830 reads; of these: 49258830 (100.00%) were paired; of these: 19167483 (38.91%) aligned concordantly 0 times 21744130 (44.14%) aligned concordantly exactly 1 time 8347217 (16.95%) aligned concordantly >1 times ---- 19167483 pairs aligned concordantly 0 times; of these: 4223033 (22.03%) aligned discordantly 1 time ---- 14944450 pairs aligned 0 times concordantly or discordantly; of these: 29888900 mates make up the pairs; of these: 25397729 (84.97%) aligned 0 times 1456456 (4.87%) aligned exactly 1 time 3034715 (10.15%) aligned >1 times 74.22% overall alignment rate Time searching: 01:18:49 Overall time: 01:18:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7041466 / 33928717 = 0.2075 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:46:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:46:46: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:46:46: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:46:55: 1000000 INFO @ Sat, 03 Apr 2021 08:47:03: 2000000 INFO @ Sat, 03 Apr 2021 08:47:12: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:47:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:47:16: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:47:16: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:47:20: 4000000 INFO @ Sat, 03 Apr 2021 08:47:24: 1000000 INFO @ Sat, 03 Apr 2021 08:47:29: 5000000 INFO @ Sat, 03 Apr 2021 08:47:31: 2000000 INFO @ Sat, 03 Apr 2021 08:47:38: 6000000 INFO @ Sat, 03 Apr 2021 08:47:39: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:47:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:47:46: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:47:46: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:47:46: 4000000 INFO @ Sat, 03 Apr 2021 08:47:47: 7000000 INFO @ Sat, 03 Apr 2021 08:47:54: 5000000 INFO @ Sat, 03 Apr 2021 08:47:55: 1000000 INFO @ Sat, 03 Apr 2021 08:47:56: 8000000 INFO @ Sat, 03 Apr 2021 08:48:02: 6000000 INFO @ Sat, 03 Apr 2021 08:48:03: 2000000 INFO @ Sat, 03 Apr 2021 08:48:05: 9000000 INFO @ Sat, 03 Apr 2021 08:48:10: 7000000 INFO @ Sat, 03 Apr 2021 08:48:11: 3000000 INFO @ Sat, 03 Apr 2021 08:48:14: 10000000 INFO @ Sat, 03 Apr 2021 08:48:18: 8000000 INFO @ Sat, 03 Apr 2021 08:48:19: 4000000 INFO @ Sat, 03 Apr 2021 08:48:23: 11000000 INFO @ Sat, 03 Apr 2021 08:48:25: 9000000 INFO @ Sat, 03 Apr 2021 08:48:26: 5000000 INFO @ Sat, 03 Apr 2021 08:48:32: 12000000 INFO @ Sat, 03 Apr 2021 08:48:33: 10000000 INFO @ Sat, 03 Apr 2021 08:48:34: 6000000 INFO @ Sat, 03 Apr 2021 08:48:41: 13000000 INFO @ Sat, 03 Apr 2021 08:48:41: 11000000 INFO @ Sat, 03 Apr 2021 08:48:43: 7000000 INFO @ Sat, 03 Apr 2021 08:48:49: 12000000 INFO @ Sat, 03 Apr 2021 08:48:50: 14000000 INFO @ Sat, 03 Apr 2021 08:48:51: 8000000 INFO @ Sat, 03 Apr 2021 08:48:57: 13000000 INFO @ Sat, 03 Apr 2021 08:48:58: 15000000 INFO @ Sat, 03 Apr 2021 08:48:59: 9000000 INFO @ Sat, 03 Apr 2021 08:49:04: 14000000 INFO @ Sat, 03 Apr 2021 08:49:07: 16000000 INFO @ Sat, 03 Apr 2021 08:49:07: 10000000 INFO @ Sat, 03 Apr 2021 08:49:12: 15000000 INFO @ Sat, 03 Apr 2021 08:49:16: 11000000 INFO @ Sat, 03 Apr 2021 08:49:16: 17000000 INFO @ Sat, 03 Apr 2021 08:49:20: 16000000 INFO @ Sat, 03 Apr 2021 08:49:24: 12000000 INFO @ Sat, 03 Apr 2021 08:49:25: 18000000 INFO @ Sat, 03 Apr 2021 08:49:28: 17000000 INFO @ Sat, 03 Apr 2021 08:49:32: 13000000 INFO @ Sat, 03 Apr 2021 08:49:35: 19000000 INFO @ Sat, 03 Apr 2021 08:49:35: 18000000 INFO @ Sat, 03 Apr 2021 08:49:40: 14000000 INFO @ Sat, 03 Apr 2021 08:49:43: 19000000 INFO @ Sat, 03 Apr 2021 08:49:44: 20000000 INFO @ Sat, 03 Apr 2021 08:49:47: 15000000 INFO @ Sat, 03 Apr 2021 08:49:51: 20000000 INFO @ Sat, 03 Apr 2021 08:49:53: 21000000 INFO @ Sat, 03 Apr 2021 08:49:55: 16000000 INFO @ Sat, 03 Apr 2021 08:49:59: 21000000 INFO @ Sat, 03 Apr 2021 08:50:02: 22000000 INFO @ Sat, 03 Apr 2021 08:50:03: 17000000 INFO @ Sat, 03 Apr 2021 08:50:06: 22000000 INFO @ Sat, 03 Apr 2021 08:50:11: 18000000 INFO @ Sat, 03 Apr 2021 08:50:11: 23000000 INFO @ Sat, 03 Apr 2021 08:50:14: 23000000 INFO @ Sat, 03 Apr 2021 08:50:19: 19000000 INFO @ Sat, 03 Apr 2021 08:50:20: 24000000 INFO @ Sat, 03 Apr 2021 08:50:22: 24000000 INFO @ Sat, 03 Apr 2021 08:50:26: 20000000 INFO @ Sat, 03 Apr 2021 08:50:29: 25000000 INFO @ Sat, 03 Apr 2021 08:50:29: 25000000 INFO @ Sat, 03 Apr 2021 08:50:33: 21000000 INFO @ Sat, 03 Apr 2021 08:50:37: 26000000 INFO @ Sat, 03 Apr 2021 08:50:38: 26000000 INFO @ Sat, 03 Apr 2021 08:50:40: 22000000 INFO @ Sat, 03 Apr 2021 08:50:45: 27000000 INFO @ Sat, 03 Apr 2021 08:50:47: 23000000 INFO @ Sat, 03 Apr 2021 08:50:47: 27000000 INFO @ Sat, 03 Apr 2021 08:50:52: 28000000 INFO @ Sat, 03 Apr 2021 08:50:54: 24000000 INFO @ Sat, 03 Apr 2021 08:50:56: 28000000 INFO @ Sat, 03 Apr 2021 08:51:00: 29000000 INFO @ Sat, 03 Apr 2021 08:51:01: 25000000 INFO @ Sat, 03 Apr 2021 08:51:05: 29000000 INFO @ Sat, 03 Apr 2021 08:51:07: 30000000 INFO @ Sat, 03 Apr 2021 08:51:07: 26000000 INFO @ Sat, 03 Apr 2021 08:51:14: 30000000 INFO @ Sat, 03 Apr 2021 08:51:14: 31000000 INFO @ Sat, 03 Apr 2021 08:51:14: 27000000 INFO @ Sat, 03 Apr 2021 08:51:21: 28000000 INFO @ Sat, 03 Apr 2021 08:51:22: 32000000 INFO @ Sat, 03 Apr 2021 08:51:22: 31000000 INFO @ Sat, 03 Apr 2021 08:51:28: 29000000 INFO @ Sat, 03 Apr 2021 08:51:29: 33000000 INFO @ Sat, 03 Apr 2021 08:51:31: 32000000 INFO @ Sat, 03 Apr 2021 08:51:35: 30000000 INFO @ Sat, 03 Apr 2021 08:51:37: 34000000 INFO @ Sat, 03 Apr 2021 08:51:39: 33000000 INFO @ Sat, 03 Apr 2021 08:51:41: 31000000 INFO @ Sat, 03 Apr 2021 08:51:44: 35000000 INFO @ Sat, 03 Apr 2021 08:51:48: 34000000 INFO @ Sat, 03 Apr 2021 08:51:48: 32000000 INFO @ Sat, 03 Apr 2021 08:51:52: 36000000 INFO @ Sat, 03 Apr 2021 08:51:55: 33000000 INFO @ Sat, 03 Apr 2021 08:51:56: 35000000 INFO @ Sat, 03 Apr 2021 08:51:59: 37000000 INFO @ Sat, 03 Apr 2021 08:52:02: 34000000 INFO @ Sat, 03 Apr 2021 08:52:05: 36000000 INFO @ Sat, 03 Apr 2021 08:52:06: 38000000 INFO @ Sat, 03 Apr 2021 08:52:08: 35000000 INFO @ Sat, 03 Apr 2021 08:52:13: 39000000 INFO @ Sat, 03 Apr 2021 08:52:13: 37000000 INFO @ Sat, 03 Apr 2021 08:52:15: 36000000 INFO @ Sat, 03 Apr 2021 08:52:20: 40000000 INFO @ Sat, 03 Apr 2021 08:52:22: 38000000 INFO @ Sat, 03 Apr 2021 08:52:22: 37000000 INFO @ Sat, 03 Apr 2021 08:52:27: 41000000 INFO @ Sat, 03 Apr 2021 08:52:29: 38000000 INFO @ Sat, 03 Apr 2021 08:52:30: 39000000 INFO @ Sat, 03 Apr 2021 08:52:34: 42000000 INFO @ Sat, 03 Apr 2021 08:52:35: 39000000 INFO @ Sat, 03 Apr 2021 08:52:37: 40000000 INFO @ Sat, 03 Apr 2021 08:52:41: 43000000 INFO @ Sat, 03 Apr 2021 08:52:42: 40000000 INFO @ Sat, 03 Apr 2021 08:52:46: 41000000 INFO @ Sat, 03 Apr 2021 08:52:48: 41000000 INFO @ Sat, 03 Apr 2021 08:52:48: 44000000 INFO @ Sat, 03 Apr 2021 08:52:54: 42000000 INFO @ Sat, 03 Apr 2021 08:52:55: 42000000 INFO @ Sat, 03 Apr 2021 08:52:56: 45000000 INFO @ Sat, 03 Apr 2021 08:53:01: 43000000 INFO @ Sat, 03 Apr 2021 08:53:02: 43000000 INFO @ Sat, 03 Apr 2021 08:53:02: 46000000 INFO @ Sat, 03 Apr 2021 08:53:07: 44000000 INFO @ Sat, 03 Apr 2021 08:53:09: 47000000 INFO @ Sat, 03 Apr 2021 08:53:10: 44000000 INFO @ Sat, 03 Apr 2021 08:53:13: 45000000 INFO @ Sat, 03 Apr 2021 08:53:17: 48000000 INFO @ Sat, 03 Apr 2021 08:53:18: 45000000 INFO @ Sat, 03 Apr 2021 08:53:19: 46000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:53:24: 49000000 INFO @ Sat, 03 Apr 2021 08:53:26: 47000000 INFO @ Sat, 03 Apr 2021 08:53:26: 46000000 INFO @ Sat, 03 Apr 2021 08:53:32: 50000000 INFO @ Sat, 03 Apr 2021 08:53:32: 48000000 INFO @ Sat, 03 Apr 2021 08:53:34: 47000000 INFO @ Sat, 03 Apr 2021 08:53:39: 49000000 INFO @ Sat, 03 Apr 2021 08:53:40: 51000000 INFO @ Sat, 03 Apr 2021 08:53:42: 48000000 INFO @ Sat, 03 Apr 2021 08:53:45: 50000000 INFO @ Sat, 03 Apr 2021 08:53:47: 52000000 INFO @ Sat, 03 Apr 2021 08:53:49: 49000000 INFO @ Sat, 03 Apr 2021 08:53:52: 51000000 INFO @ Sat, 03 Apr 2021 08:53:54: 53000000 INFO @ Sat, 03 Apr 2021 08:53:56: 50000000 INFO @ Sat, 03 Apr 2021 08:53:59: 52000000 INFO @ Sat, 03 Apr 2021 08:54:01: 54000000 INFO @ Sat, 03 Apr 2021 08:54:04: 51000000 INFO @ Sat, 03 Apr 2021 08:54:05: 53000000 INFO @ Sat, 03 Apr 2021 08:54:08: 55000000 INFO @ Sat, 03 Apr 2021 08:54:11: 52000000 INFO @ Sat, 03 Apr 2021 08:54:12: 54000000 INFO @ Sat, 03 Apr 2021 08:54:15: 56000000 INFO @ Sat, 03 Apr 2021 08:54:18: 53000000 INFO @ Sat, 03 Apr 2021 08:54:19: 55000000 INFO @ Sat, 03 Apr 2021 08:54:23: 57000000 INFO @ Sat, 03 Apr 2021 08:54:25: 54000000 INFO @ Sat, 03 Apr 2021 08:54:25: 56000000 INFO @ Sat, 03 Apr 2021 08:54:30: 58000000 INFO @ Sat, 03 Apr 2021 08:54:32: 57000000 INFO @ Sat, 03 Apr 2021 08:54:32: 55000000 INFO @ Sat, 03 Apr 2021 08:54:37: 59000000 INFO @ Sat, 03 Apr 2021 08:54:38: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:54:38: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:54:38: #1 total tags in treatment: 23658486 INFO @ Sat, 03 Apr 2021 08:54:38: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:54:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:54:38: #1 tags after filtering in treatment: 16033235 INFO @ Sat, 03 Apr 2021 08:54:38: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 08:54:38: #1 finished! INFO @ Sat, 03 Apr 2021 08:54:38: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:54:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:54:38: 58000000 INFO @ Sat, 03 Apr 2021 08:54:39: 56000000 INFO @ Sat, 03 Apr 2021 08:54:40: #2 number of paired peaks: 648 WARNING @ Sat, 03 Apr 2021 08:54:40: Fewer paired peaks (648) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 648 pairs to build model! INFO @ Sat, 03 Apr 2021 08:54:40: start model_add_line... INFO @ Sat, 03 Apr 2021 08:54:40: start X-correlation... INFO @ Sat, 03 Apr 2021 08:54:40: end of X-cor INFO @ Sat, 03 Apr 2021 08:54:40: #2 finished! INFO @ Sat, 03 Apr 2021 08:54:40: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:54:40: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 08:54:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.10_model.r WARNING @ Sat, 03 Apr 2021 08:54:40: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:54:40: #2 You may need to consider one of the other alternative d(s): 86 WARNING @ Sat, 03 Apr 2021 08:54:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:54:40: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:54:40: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:54:45: 59000000 INFO @ Sat, 03 Apr 2021 08:54:46: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:54:46: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:54:46: #1 total tags in treatment: 23658486 INFO @ Sat, 03 Apr 2021 08:54:46: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:54:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:54:46: #1 tags after filtering in treatment: 16033235 INFO @ Sat, 03 Apr 2021 08:54:46: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 08:54:46: #1 finished! INFO @ Sat, 03 Apr 2021 08:54:46: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:54:46: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:54:47: 57000000 INFO @ Sat, 03 Apr 2021 08:54:48: #2 number of paired peaks: 648 WARNING @ Sat, 03 Apr 2021 08:54:48: Fewer paired peaks (648) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 648 pairs to build model! INFO @ Sat, 03 Apr 2021 08:54:48: start model_add_line... INFO @ Sat, 03 Apr 2021 08:54:48: start X-correlation... INFO @ Sat, 03 Apr 2021 08:54:48: end of X-cor INFO @ Sat, 03 Apr 2021 08:54:48: #2 finished! INFO @ Sat, 03 Apr 2021 08:54:48: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:54:48: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 08:54:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.20_model.r WARNING @ Sat, 03 Apr 2021 08:54:48: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:54:48: #2 You may need to consider one of the other alternative d(s): 86 WARNING @ Sat, 03 Apr 2021 08:54:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:54:48: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:54:48: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:54:54: 58000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:55:01: 59000000 INFO @ Sat, 03 Apr 2021 08:55:01: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:55:01: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:55:01: #1 total tags in treatment: 23658486 INFO @ Sat, 03 Apr 2021 08:55:01: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:55:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:55:02: #1 tags after filtering in treatment: 16033235 INFO @ Sat, 03 Apr 2021 08:55:02: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 08:55:02: #1 finished! INFO @ Sat, 03 Apr 2021 08:55:02: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:55:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:55:03: #2 number of paired peaks: 648 WARNING @ Sat, 03 Apr 2021 08:55:03: Fewer paired peaks (648) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 648 pairs to build model! INFO @ Sat, 03 Apr 2021 08:55:03: start model_add_line... INFO @ Sat, 03 Apr 2021 08:55:03: start X-correlation... INFO @ Sat, 03 Apr 2021 08:55:03: end of X-cor INFO @ Sat, 03 Apr 2021 08:55:03: #2 finished! INFO @ Sat, 03 Apr 2021 08:55:03: #2 predicted fragment length is 86 bps INFO @ Sat, 03 Apr 2021 08:55:03: #2 alternative fragment length(s) may be 86 bps INFO @ Sat, 03 Apr 2021 08:55:03: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.05_model.r WARNING @ Sat, 03 Apr 2021 08:55:03: #2 Since the d (86) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:55:03: #2 You may need to consider one of the other alternative d(s): 86 WARNING @ Sat, 03 Apr 2021 08:55:03: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:55:03: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:55:03: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:55:22: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:55:30: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:55:45: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:55:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:55:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.10_summits.bed INFO @ Sat, 03 Apr 2021 08:55:45: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (9918 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:55:46: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:55:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:55:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:55:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.20_summits.bed INFO @ Sat, 03 Apr 2021 08:55:53: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (3172 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:56:09: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:56:10: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:56:10: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4782829/SRX4782829.05_summits.bed INFO @ Sat, 03 Apr 2021 08:56:10: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (17412 records, 4 fields): 29 millis CompletedMACS2peakCalling