Job ID = 12265262 SRX = SRX4782828 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 50499649 spots for SRR7948881/SRR7948881.sra Written 50499649 spots for SRR7948881/SRR7948881.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265714 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:57:57 50499649 reads; of these: 50499649 (100.00%) were paired; of these: 18984029 (37.59%) aligned concordantly 0 times 24337470 (48.19%) aligned concordantly exactly 1 time 7178150 (14.21%) aligned concordantly >1 times ---- 18984029 pairs aligned concordantly 0 times; of these: 4438423 (23.38%) aligned discordantly 1 time ---- 14545606 pairs aligned 0 times concordantly or discordantly; of these: 29091212 mates make up the pairs; of these: 25129459 (86.38%) aligned 0 times 1541136 (5.30%) aligned exactly 1 time 2420617 (8.32%) aligned >1 times 75.12% overall alignment rate Time searching: 00:57:57 Overall time: 00:57:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7760885 / 35570028 = 0.2182 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:17:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:17:30: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:17:30: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:17:36: 1000000 INFO @ Sat, 03 Apr 2021 08:17:42: 2000000 INFO @ Sat, 03 Apr 2021 08:17:47: 3000000 INFO @ Sat, 03 Apr 2021 08:17:53: 4000000 INFO @ Sat, 03 Apr 2021 08:17:58: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:18:00: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:18:00: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:18:00: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:18:04: 6000000 INFO @ Sat, 03 Apr 2021 08:18:06: 1000000 INFO @ Sat, 03 Apr 2021 08:18:10: 7000000 INFO @ Sat, 03 Apr 2021 08:18:12: 2000000 INFO @ Sat, 03 Apr 2021 08:18:15: 8000000 INFO @ Sat, 03 Apr 2021 08:18:17: 3000000 INFO @ Sat, 03 Apr 2021 08:18:21: 9000000 INFO @ Sat, 03 Apr 2021 08:18:23: 4000000 INFO @ Sat, 03 Apr 2021 08:18:26: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:18:28: 5000000 INFO @ Sat, 03 Apr 2021 08:18:30: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:18:30: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:18:30: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:18:32: 11000000 INFO @ Sat, 03 Apr 2021 08:18:34: 6000000 INFO @ Sat, 03 Apr 2021 08:18:36: 1000000 INFO @ Sat, 03 Apr 2021 08:18:38: 12000000 INFO @ Sat, 03 Apr 2021 08:18:40: 7000000 INFO @ Sat, 03 Apr 2021 08:18:42: 2000000 INFO @ Sat, 03 Apr 2021 08:18:43: 13000000 INFO @ Sat, 03 Apr 2021 08:18:45: 8000000 INFO @ Sat, 03 Apr 2021 08:18:48: 3000000 INFO @ Sat, 03 Apr 2021 08:18:49: 14000000 INFO @ Sat, 03 Apr 2021 08:18:51: 9000000 INFO @ Sat, 03 Apr 2021 08:18:53: 4000000 INFO @ Sat, 03 Apr 2021 08:18:55: 15000000 INFO @ Sat, 03 Apr 2021 08:18:56: 10000000 INFO @ Sat, 03 Apr 2021 08:18:59: 5000000 INFO @ Sat, 03 Apr 2021 08:19:00: 16000000 INFO @ Sat, 03 Apr 2021 08:19:02: 11000000 INFO @ Sat, 03 Apr 2021 08:19:05: 6000000 INFO @ Sat, 03 Apr 2021 08:19:06: 17000000 INFO @ Sat, 03 Apr 2021 08:19:08: 12000000 INFO @ Sat, 03 Apr 2021 08:19:11: 7000000 INFO @ Sat, 03 Apr 2021 08:19:12: 18000000 INFO @ Sat, 03 Apr 2021 08:19:13: 13000000 INFO @ Sat, 03 Apr 2021 08:19:16: 8000000 INFO @ Sat, 03 Apr 2021 08:19:17: 19000000 INFO @ Sat, 03 Apr 2021 08:19:19: 14000000 INFO @ Sat, 03 Apr 2021 08:19:22: 9000000 INFO @ Sat, 03 Apr 2021 08:19:23: 20000000 INFO @ Sat, 03 Apr 2021 08:19:25: 15000000 INFO @ Sat, 03 Apr 2021 08:19:28: 10000000 INFO @ Sat, 03 Apr 2021 08:19:29: 21000000 INFO @ Sat, 03 Apr 2021 08:19:30: 16000000 INFO @ Sat, 03 Apr 2021 08:19:33: 11000000 INFO @ Sat, 03 Apr 2021 08:19:34: 22000000 INFO @ Sat, 03 Apr 2021 08:19:36: 17000000 INFO @ Sat, 03 Apr 2021 08:19:39: 12000000 INFO @ Sat, 03 Apr 2021 08:19:40: 23000000 INFO @ Sat, 03 Apr 2021 08:19:42: 18000000 INFO @ Sat, 03 Apr 2021 08:19:45: 13000000 INFO @ Sat, 03 Apr 2021 08:19:46: 24000000 INFO @ Sat, 03 Apr 2021 08:19:47: 19000000 INFO @ Sat, 03 Apr 2021 08:19:50: 14000000 INFO @ Sat, 03 Apr 2021 08:19:51: 25000000 INFO @ Sat, 03 Apr 2021 08:19:53: 20000000 INFO @ Sat, 03 Apr 2021 08:19:56: 15000000 INFO @ Sat, 03 Apr 2021 08:19:57: 26000000 INFO @ Sat, 03 Apr 2021 08:19:59: 21000000 INFO @ Sat, 03 Apr 2021 08:20:02: 16000000 INFO @ Sat, 03 Apr 2021 08:20:02: 27000000 INFO @ Sat, 03 Apr 2021 08:20:04: 22000000 INFO @ Sat, 03 Apr 2021 08:20:07: 17000000 INFO @ Sat, 03 Apr 2021 08:20:08: 28000000 INFO @ Sat, 03 Apr 2021 08:20:10: 23000000 INFO @ Sat, 03 Apr 2021 08:20:13: 18000000 INFO @ Sat, 03 Apr 2021 08:20:14: 29000000 INFO @ Sat, 03 Apr 2021 08:20:15: 24000000 INFO @ Sat, 03 Apr 2021 08:20:19: 19000000 INFO @ Sat, 03 Apr 2021 08:20:19: 30000000 INFO @ Sat, 03 Apr 2021 08:20:21: 25000000 INFO @ Sat, 03 Apr 2021 08:20:24: 20000000 INFO @ Sat, 03 Apr 2021 08:20:25: 31000000 INFO @ Sat, 03 Apr 2021 08:20:27: 26000000 INFO @ Sat, 03 Apr 2021 08:20:30: 21000000 INFO @ Sat, 03 Apr 2021 08:20:30: 32000000 INFO @ Sat, 03 Apr 2021 08:20:32: 27000000 INFO @ Sat, 03 Apr 2021 08:20:36: 22000000 INFO @ Sat, 03 Apr 2021 08:20:36: 33000000 INFO @ Sat, 03 Apr 2021 08:20:38: 28000000 INFO @ Sat, 03 Apr 2021 08:20:41: 23000000 INFO @ Sat, 03 Apr 2021 08:20:42: 34000000 INFO @ Sat, 03 Apr 2021 08:20:44: 29000000 INFO @ Sat, 03 Apr 2021 08:20:47: 24000000 INFO @ Sat, 03 Apr 2021 08:20:47: 35000000 INFO @ Sat, 03 Apr 2021 08:20:49: 30000000 INFO @ Sat, 03 Apr 2021 08:20:53: 25000000 INFO @ Sat, 03 Apr 2021 08:20:53: 36000000 INFO @ Sat, 03 Apr 2021 08:20:55: 31000000 INFO @ Sat, 03 Apr 2021 08:20:58: 37000000 INFO @ Sat, 03 Apr 2021 08:20:58: 26000000 INFO @ Sat, 03 Apr 2021 08:21:00: 32000000 INFO @ Sat, 03 Apr 2021 08:21:04: 38000000 INFO @ Sat, 03 Apr 2021 08:21:04: 27000000 INFO @ Sat, 03 Apr 2021 08:21:06: 33000000 INFO @ Sat, 03 Apr 2021 08:21:09: 39000000 INFO @ Sat, 03 Apr 2021 08:21:10: 28000000 INFO @ Sat, 03 Apr 2021 08:21:11: 34000000 INFO @ Sat, 03 Apr 2021 08:21:15: 40000000 INFO @ Sat, 03 Apr 2021 08:21:15: 29000000 INFO @ Sat, 03 Apr 2021 08:21:17: 35000000 INFO @ Sat, 03 Apr 2021 08:21:21: 41000000 INFO @ Sat, 03 Apr 2021 08:21:21: 30000000 INFO @ Sat, 03 Apr 2021 08:21:22: 36000000 INFO @ Sat, 03 Apr 2021 08:21:26: 31000000 INFO @ Sat, 03 Apr 2021 08:21:27: 42000000 INFO @ Sat, 03 Apr 2021 08:21:28: 37000000 INFO @ Sat, 03 Apr 2021 08:21:32: 32000000 INFO @ Sat, 03 Apr 2021 08:21:32: 43000000 INFO @ Sat, 03 Apr 2021 08:21:33: 38000000 INFO @ Sat, 03 Apr 2021 08:21:38: 33000000 INFO @ Sat, 03 Apr 2021 08:21:38: 44000000 INFO @ Sat, 03 Apr 2021 08:21:39: 39000000 INFO @ Sat, 03 Apr 2021 08:21:43: 34000000 INFO @ Sat, 03 Apr 2021 08:21:43: 45000000 INFO @ Sat, 03 Apr 2021 08:21:44: 40000000 INFO @ Sat, 03 Apr 2021 08:21:49: 46000000 INFO @ Sat, 03 Apr 2021 08:21:49: 35000000 INFO @ Sat, 03 Apr 2021 08:21:50: 41000000 INFO @ Sat, 03 Apr 2021 08:21:54: 47000000 INFO @ Sat, 03 Apr 2021 08:21:54: 36000000 INFO @ Sat, 03 Apr 2021 08:21:56: 42000000 INFO @ Sat, 03 Apr 2021 08:21:59: 48000000 INFO @ Sat, 03 Apr 2021 08:22:00: 37000000 INFO @ Sat, 03 Apr 2021 08:22:01: 43000000 INFO @ Sat, 03 Apr 2021 08:22:05: 49000000 INFO @ Sat, 03 Apr 2021 08:22:05: 38000000 INFO @ Sat, 03 Apr 2021 08:22:07: 44000000 INFO @ Sat, 03 Apr 2021 08:22:11: 50000000 INFO @ Sat, 03 Apr 2021 08:22:11: 39000000 INFO @ Sat, 03 Apr 2021 08:22:12: 45000000 INFO @ Sat, 03 Apr 2021 08:22:16: 51000000 INFO @ Sat, 03 Apr 2021 08:22:17: 40000000 INFO @ Sat, 03 Apr 2021 08:22:18: 46000000 INFO @ Sat, 03 Apr 2021 08:22:22: 52000000 INFO @ Sat, 03 Apr 2021 08:22:23: 41000000 INFO @ Sat, 03 Apr 2021 08:22:23: 47000000 INFO @ Sat, 03 Apr 2021 08:22:27: 53000000 INFO @ Sat, 03 Apr 2021 08:22:28: 48000000 INFO @ Sat, 03 Apr 2021 08:22:28: 42000000 INFO @ Sat, 03 Apr 2021 08:22:33: 54000000 INFO @ Sat, 03 Apr 2021 08:22:34: 49000000 INFO @ Sat, 03 Apr 2021 08:22:34: 43000000 INFO @ Sat, 03 Apr 2021 08:22:38: 55000000 INFO @ Sat, 03 Apr 2021 08:22:39: 50000000 INFO @ Sat, 03 Apr 2021 08:22:40: 44000000 INFO @ Sat, 03 Apr 2021 08:22:44: 56000000 INFO @ Sat, 03 Apr 2021 08:22:45: 51000000 INFO @ Sat, 03 Apr 2021 08:22:45: 45000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:22:49: 57000000 INFO @ Sat, 03 Apr 2021 08:22:50: 46000000 INFO @ Sat, 03 Apr 2021 08:22:50: 52000000 INFO @ Sat, 03 Apr 2021 08:22:55: 58000000 INFO @ Sat, 03 Apr 2021 08:22:56: 47000000 INFO @ Sat, 03 Apr 2021 08:22:56: 53000000 INFO @ Sat, 03 Apr 2021 08:23:00: 59000000 INFO @ Sat, 03 Apr 2021 08:23:01: 48000000 INFO @ Sat, 03 Apr 2021 08:23:01: 54000000 INFO @ Sat, 03 Apr 2021 08:23:06: 60000000 INFO @ Sat, 03 Apr 2021 08:23:06: 49000000 INFO @ Sat, 03 Apr 2021 08:23:07: 55000000 INFO @ Sat, 03 Apr 2021 08:23:08: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:23:08: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:23:08: #1 total tags in treatment: 24577457 INFO @ Sat, 03 Apr 2021 08:23:08: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:23:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:23:09: #1 tags after filtering in treatment: 14896753 INFO @ Sat, 03 Apr 2021 08:23:09: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 08:23:09: #1 finished! INFO @ Sat, 03 Apr 2021 08:23:09: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:23:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:23:10: #2 number of paired peaks: 1859 INFO @ Sat, 03 Apr 2021 08:23:10: start model_add_line... INFO @ Sat, 03 Apr 2021 08:23:10: start X-correlation... INFO @ Sat, 03 Apr 2021 08:23:10: end of X-cor INFO @ Sat, 03 Apr 2021 08:23:10: #2 finished! INFO @ Sat, 03 Apr 2021 08:23:10: #2 predicted fragment length is 99 bps INFO @ Sat, 03 Apr 2021 08:23:10: #2 alternative fragment length(s) may be 99 bps INFO @ Sat, 03 Apr 2021 08:23:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.05_model.r WARNING @ Sat, 03 Apr 2021 08:23:10: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:23:10: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Sat, 03 Apr 2021 08:23:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:23:10: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:23:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:23:12: 50000000 INFO @ Sat, 03 Apr 2021 08:23:12: 56000000 INFO @ Sat, 03 Apr 2021 08:23:17: 51000000 INFO @ Sat, 03 Apr 2021 08:23:18: 57000000 INFO @ Sat, 03 Apr 2021 08:23:23: 52000000 INFO @ Sat, 03 Apr 2021 08:23:23: 58000000 INFO @ Sat, 03 Apr 2021 08:23:28: 53000000 INFO @ Sat, 03 Apr 2021 08:23:28: 59000000 INFO @ Sat, 03 Apr 2021 08:23:34: 54000000 INFO @ Sat, 03 Apr 2021 08:23:34: 60000000 INFO @ Sat, 03 Apr 2021 08:23:36: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:23:36: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:23:36: #1 total tags in treatment: 24577457 INFO @ Sat, 03 Apr 2021 08:23:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:23:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:23:37: #1 tags after filtering in treatment: 14896753 INFO @ Sat, 03 Apr 2021 08:23:37: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 08:23:37: #1 finished! INFO @ Sat, 03 Apr 2021 08:23:37: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:23:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:23:38: #2 number of paired peaks: 1859 INFO @ Sat, 03 Apr 2021 08:23:38: start model_add_line... INFO @ Sat, 03 Apr 2021 08:23:38: start X-correlation... INFO @ Sat, 03 Apr 2021 08:23:38: end of X-cor INFO @ Sat, 03 Apr 2021 08:23:38: #2 finished! INFO @ Sat, 03 Apr 2021 08:23:38: #2 predicted fragment length is 99 bps INFO @ Sat, 03 Apr 2021 08:23:38: #2 alternative fragment length(s) may be 99 bps INFO @ Sat, 03 Apr 2021 08:23:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.10_model.r WARNING @ Sat, 03 Apr 2021 08:23:38: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:23:38: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Sat, 03 Apr 2021 08:23:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:23:38: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:23:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:23:39: 55000000 INFO @ Sat, 03 Apr 2021 08:23:44: 56000000 INFO @ Sat, 03 Apr 2021 08:23:45: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:23:50: 57000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:23:55: 58000000 INFO @ Sat, 03 Apr 2021 08:24:00: 59000000 INFO @ Sat, 03 Apr 2021 08:24:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:24:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:24:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.05_summits.bed INFO @ Sat, 03 Apr 2021 08:24:03: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (20324 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:24:05: 60000000 INFO @ Sat, 03 Apr 2021 08:24:08: #1 tag size is determined as 75 bps INFO @ Sat, 03 Apr 2021 08:24:08: #1 tag size = 75 INFO @ Sat, 03 Apr 2021 08:24:08: #1 total tags in treatment: 24577457 INFO @ Sat, 03 Apr 2021 08:24:08: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:24:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:24:08: #1 tags after filtering in treatment: 14896753 INFO @ Sat, 03 Apr 2021 08:24:08: #1 Redundant rate of treatment: 0.39 INFO @ Sat, 03 Apr 2021 08:24:08: #1 finished! INFO @ Sat, 03 Apr 2021 08:24:08: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:24:08: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:24:09: #2 number of paired peaks: 1859 INFO @ Sat, 03 Apr 2021 08:24:09: start model_add_line... INFO @ Sat, 03 Apr 2021 08:24:09: start X-correlation... INFO @ Sat, 03 Apr 2021 08:24:10: end of X-cor INFO @ Sat, 03 Apr 2021 08:24:10: #2 finished! INFO @ Sat, 03 Apr 2021 08:24:10: #2 predicted fragment length is 99 bps INFO @ Sat, 03 Apr 2021 08:24:10: #2 alternative fragment length(s) may be 99 bps INFO @ Sat, 03 Apr 2021 08:24:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.20_model.r WARNING @ Sat, 03 Apr 2021 08:24:10: #2 Since the d (99) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:24:10: #2 You may need to consider one of the other alternative d(s): 99 WARNING @ Sat, 03 Apr 2021 08:24:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:24:10: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:24:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:24:12: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:24:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:24:30: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:24:30: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.10_summits.bed INFO @ Sat, 03 Apr 2021 08:24:30: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (13416 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:24:45: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:25:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:25:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:25:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4782828/SRX4782828.20_summits.bed INFO @ Sat, 03 Apr 2021 08:25:03: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (5788 records, 4 fields): 7 millis CompletedMACS2peakCalling