Job ID = 12265253 SRX = SRX4664632 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 34779524 spots for SRR7813059/SRR7813059.sra Written 34779524 spots for SRR7813059/SRR7813059.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265685 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:16:51 34779524 reads; of these: 34779524 (100.00%) were paired; of these: 9978971 (28.69%) aligned concordantly 0 times 12658867 (36.40%) aligned concordantly exactly 1 time 12141686 (34.91%) aligned concordantly >1 times ---- 9978971 pairs aligned concordantly 0 times; of these: 2996375 (30.03%) aligned discordantly 1 time ---- 6982596 pairs aligned 0 times concordantly or discordantly; of these: 13965192 mates make up the pairs; of these: 9387067 (67.22%) aligned 0 times 1131311 (8.10%) aligned exactly 1 time 3446814 (24.68%) aligned >1 times 86.50% overall alignment rate Time searching: 01:16:51 Overall time: 01:16:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7445669 / 27363529 = 0.2721 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:57:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:57:50: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:57:50: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:57:58: 1000000 INFO @ Sat, 03 Apr 2021 07:58:06: 2000000 INFO @ Sat, 03 Apr 2021 07:58:15: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:58:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:58:18: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:58:18: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:58:23: 4000000 INFO @ Sat, 03 Apr 2021 07:58:27: 1000000 INFO @ Sat, 03 Apr 2021 07:58:32: 5000000 INFO @ Sat, 03 Apr 2021 07:58:36: 2000000 INFO @ Sat, 03 Apr 2021 07:58:41: 6000000 INFO @ Sat, 03 Apr 2021 07:58:44: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:58:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:58:48: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:58:48: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:58:50: 7000000 INFO @ Sat, 03 Apr 2021 07:58:53: 4000000 INFO @ Sat, 03 Apr 2021 07:58:57: 1000000 INFO @ Sat, 03 Apr 2021 07:58:58: 8000000 INFO @ Sat, 03 Apr 2021 07:59:02: 5000000 INFO @ Sat, 03 Apr 2021 07:59:06: 2000000 INFO @ Sat, 03 Apr 2021 07:59:07: 9000000 INFO @ Sat, 03 Apr 2021 07:59:10: 6000000 INFO @ Sat, 03 Apr 2021 07:59:14: 3000000 INFO @ Sat, 03 Apr 2021 07:59:15: 10000000 INFO @ Sat, 03 Apr 2021 07:59:19: 7000000 INFO @ Sat, 03 Apr 2021 07:59:23: 4000000 INFO @ Sat, 03 Apr 2021 07:59:24: 11000000 INFO @ Sat, 03 Apr 2021 07:59:28: 8000000 INFO @ Sat, 03 Apr 2021 07:59:32: 5000000 INFO @ Sat, 03 Apr 2021 07:59:33: 12000000 INFO @ Sat, 03 Apr 2021 07:59:37: 9000000 INFO @ Sat, 03 Apr 2021 07:59:40: 6000000 INFO @ Sat, 03 Apr 2021 07:59:41: 13000000 INFO @ Sat, 03 Apr 2021 07:59:46: 10000000 INFO @ Sat, 03 Apr 2021 07:59:49: 7000000 INFO @ Sat, 03 Apr 2021 07:59:50: 14000000 INFO @ Sat, 03 Apr 2021 07:59:54: 11000000 INFO @ Sat, 03 Apr 2021 07:59:58: 8000000 INFO @ Sat, 03 Apr 2021 07:59:59: 15000000 INFO @ Sat, 03 Apr 2021 08:00:03: 12000000 INFO @ Sat, 03 Apr 2021 08:00:06: 9000000 INFO @ Sat, 03 Apr 2021 08:00:08: 16000000 INFO @ Sat, 03 Apr 2021 08:00:12: 13000000 INFO @ Sat, 03 Apr 2021 08:00:14: 10000000 INFO @ Sat, 03 Apr 2021 08:00:16: 17000000 INFO @ Sat, 03 Apr 2021 08:00:21: 14000000 INFO @ Sat, 03 Apr 2021 08:00:23: 11000000 INFO @ Sat, 03 Apr 2021 08:00:25: 18000000 INFO @ Sat, 03 Apr 2021 08:00:30: 15000000 INFO @ Sat, 03 Apr 2021 08:00:32: 12000000 INFO @ Sat, 03 Apr 2021 08:00:34: 19000000 INFO @ Sat, 03 Apr 2021 08:00:39: 16000000 INFO @ Sat, 03 Apr 2021 08:00:40: 13000000 INFO @ Sat, 03 Apr 2021 08:00:42: 20000000 INFO @ Sat, 03 Apr 2021 08:00:48: 17000000 INFO @ Sat, 03 Apr 2021 08:00:49: 14000000 INFO @ Sat, 03 Apr 2021 08:00:51: 21000000 INFO @ Sat, 03 Apr 2021 08:00:56: 18000000 INFO @ Sat, 03 Apr 2021 08:00:58: 15000000 INFO @ Sat, 03 Apr 2021 08:01:00: 22000000 INFO @ Sat, 03 Apr 2021 08:01:05: 19000000 INFO @ Sat, 03 Apr 2021 08:01:06: 16000000 INFO @ Sat, 03 Apr 2021 08:01:08: 23000000 INFO @ Sat, 03 Apr 2021 08:01:14: 20000000 INFO @ Sat, 03 Apr 2021 08:01:15: 17000000 INFO @ Sat, 03 Apr 2021 08:01:17: 24000000 INFO @ Sat, 03 Apr 2021 08:01:23: 21000000 INFO @ Sat, 03 Apr 2021 08:01:23: 18000000 INFO @ Sat, 03 Apr 2021 08:01:25: 25000000 INFO @ Sat, 03 Apr 2021 08:01:32: 22000000 INFO @ Sat, 03 Apr 2021 08:01:32: 19000000 INFO @ Sat, 03 Apr 2021 08:01:33: 26000000 INFO @ Sat, 03 Apr 2021 08:01:40: 23000000 INFO @ Sat, 03 Apr 2021 08:01:40: 20000000 INFO @ Sat, 03 Apr 2021 08:01:42: 27000000 INFO @ Sat, 03 Apr 2021 08:01:49: 21000000 INFO @ Sat, 03 Apr 2021 08:01:49: 24000000 INFO @ Sat, 03 Apr 2021 08:01:51: 28000000 INFO @ Sat, 03 Apr 2021 08:01:57: 22000000 INFO @ Sat, 03 Apr 2021 08:01:58: 25000000 INFO @ Sat, 03 Apr 2021 08:02:00: 29000000 INFO @ Sat, 03 Apr 2021 08:02:06: 23000000 INFO @ Sat, 03 Apr 2021 08:02:07: 26000000 INFO @ Sat, 03 Apr 2021 08:02:08: 30000000 INFO @ Sat, 03 Apr 2021 08:02:15: 24000000 INFO @ Sat, 03 Apr 2021 08:02:16: 27000000 INFO @ Sat, 03 Apr 2021 08:02:16: 31000000 INFO @ Sat, 03 Apr 2021 08:02:23: 25000000 INFO @ Sat, 03 Apr 2021 08:02:25: 32000000 INFO @ Sat, 03 Apr 2021 08:02:25: 28000000 INFO @ Sat, 03 Apr 2021 08:02:32: 26000000 INFO @ Sat, 03 Apr 2021 08:02:33: 33000000 INFO @ Sat, 03 Apr 2021 08:02:33: 29000000 INFO @ Sat, 03 Apr 2021 08:02:40: 27000000 INFO @ Sat, 03 Apr 2021 08:02:41: 34000000 INFO @ Sat, 03 Apr 2021 08:02:42: 30000000 INFO @ Sat, 03 Apr 2021 08:02:49: 28000000 INFO @ Sat, 03 Apr 2021 08:02:49: 31000000 INFO @ Sat, 03 Apr 2021 08:02:50: 35000000 INFO @ Sat, 03 Apr 2021 08:02:58: 32000000 INFO @ Sat, 03 Apr 2021 08:02:58: 29000000 INFO @ Sat, 03 Apr 2021 08:02:59: 36000000 INFO @ Sat, 03 Apr 2021 08:03:06: 33000000 INFO @ Sat, 03 Apr 2021 08:03:06: 30000000 INFO @ Sat, 03 Apr 2021 08:03:07: 37000000 INFO @ Sat, 03 Apr 2021 08:03:15: 34000000 INFO @ Sat, 03 Apr 2021 08:03:15: 31000000 INFO @ Sat, 03 Apr 2021 08:03:16: 38000000 INFO @ Sat, 03 Apr 2021 08:03:24: 32000000 INFO @ Sat, 03 Apr 2021 08:03:24: 35000000 INFO @ Sat, 03 Apr 2021 08:03:25: 39000000 INFO @ Sat, 03 Apr 2021 08:03:33: 33000000 INFO @ Sat, 03 Apr 2021 08:03:34: 40000000 INFO @ Sat, 03 Apr 2021 08:03:34: 36000000 INFO @ Sat, 03 Apr 2021 08:03:42: 34000000 INFO @ Sat, 03 Apr 2021 08:03:43: 41000000 INFO @ Sat, 03 Apr 2021 08:03:44: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:03:52: 35000000 INFO @ Sat, 03 Apr 2021 08:03:52: 42000000 INFO @ Sat, 03 Apr 2021 08:03:54: 38000000 INFO @ Sat, 03 Apr 2021 08:04:01: 43000000 INFO @ Sat, 03 Apr 2021 08:04:03: 36000000 INFO @ Sat, 03 Apr 2021 08:04:05: 39000000 INFO @ Sat, 03 Apr 2021 08:04:10: 44000000 INFO @ Sat, 03 Apr 2021 08:04:13: 37000000 INFO @ Sat, 03 Apr 2021 08:04:15: 40000000 INFO @ Sat, 03 Apr 2021 08:04:19: 45000000 INFO @ Sat, 03 Apr 2021 08:04:22: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:04:22: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:04:22: #1 total tags in treatment: 17772629 INFO @ Sat, 03 Apr 2021 08:04:22: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:04:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:04:22: #1 tags after filtering in treatment: 13672730 INFO @ Sat, 03 Apr 2021 08:04:22: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 08:04:22: #1 finished! INFO @ Sat, 03 Apr 2021 08:04:22: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:04:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:04:23: 38000000 INFO @ Sat, 03 Apr 2021 08:04:23: #2 number of paired peaks: 467 WARNING @ Sat, 03 Apr 2021 08:04:23: Fewer paired peaks (467) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 467 pairs to build model! INFO @ Sat, 03 Apr 2021 08:04:23: start model_add_line... INFO @ Sat, 03 Apr 2021 08:04:24: start X-correlation... INFO @ Sat, 03 Apr 2021 08:04:24: end of X-cor INFO @ Sat, 03 Apr 2021 08:04:24: #2 finished! INFO @ Sat, 03 Apr 2021 08:04:24: #2 predicted fragment length is 58 bps INFO @ Sat, 03 Apr 2021 08:04:24: #2 alternative fragment length(s) may be 4,58,71 bps INFO @ Sat, 03 Apr 2021 08:04:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.05_model.r WARNING @ Sat, 03 Apr 2021 08:04:24: #2 Since the d (58) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:04:24: #2 You may need to consider one of the other alternative d(s): 4,58,71 WARNING @ Sat, 03 Apr 2021 08:04:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:04:24: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:04:24: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:04:25: 41000000 INFO @ Sat, 03 Apr 2021 08:04:33: 39000000 INFO @ Sat, 03 Apr 2021 08:04:35: 42000000 INFO @ Sat, 03 Apr 2021 08:04:44: 40000000 INFO @ Sat, 03 Apr 2021 08:04:46: 43000000 INFO @ Sat, 03 Apr 2021 08:04:54: 41000000 INFO @ Sat, 03 Apr 2021 08:04:55: 44000000 INFO @ Sat, 03 Apr 2021 08:05:04: 42000000 INFO @ Sat, 03 Apr 2021 08:05:04: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:05:05: 45000000 INFO @ Sat, 03 Apr 2021 08:05:09: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:05:09: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:05:09: #1 total tags in treatment: 17772629 INFO @ Sat, 03 Apr 2021 08:05:09: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:05:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:05:09: #1 tags after filtering in treatment: 13672730 INFO @ Sat, 03 Apr 2021 08:05:09: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 08:05:09: #1 finished! INFO @ Sat, 03 Apr 2021 08:05:09: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:05:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:05:10: #2 number of paired peaks: 467 WARNING @ Sat, 03 Apr 2021 08:05:10: Fewer paired peaks (467) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 467 pairs to build model! INFO @ Sat, 03 Apr 2021 08:05:10: start model_add_line... INFO @ Sat, 03 Apr 2021 08:05:10: start X-correlation... INFO @ Sat, 03 Apr 2021 08:05:10: end of X-cor INFO @ Sat, 03 Apr 2021 08:05:10: #2 finished! INFO @ Sat, 03 Apr 2021 08:05:11: #2 predicted fragment length is 58 bps INFO @ Sat, 03 Apr 2021 08:05:11: #2 alternative fragment length(s) may be 4,58,71 bps INFO @ Sat, 03 Apr 2021 08:05:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.10_model.r WARNING @ Sat, 03 Apr 2021 08:05:11: #2 Since the d (58) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:05:11: #2 You may need to consider one of the other alternative d(s): 4,58,71 WARNING @ Sat, 03 Apr 2021 08:05:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:05:11: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:05:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:05:14: 43000000 INFO @ Sat, 03 Apr 2021 08:05:23: 44000000 INFO @ Sat, 03 Apr 2021 08:05:26: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:05:26: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:05:26: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.05_summits.bed INFO @ Sat, 03 Apr 2021 08:05:26: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (5644 records, 4 fields): 18 millis CompletedMACS2peakCalling BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:05:32: 45000000 INFO @ Sat, 03 Apr 2021 08:05:34: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 08:05:34: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 08:05:34: #1 total tags in treatment: 17772629 INFO @ Sat, 03 Apr 2021 08:05:34: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:05:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:05:35: #1 tags after filtering in treatment: 13672730 INFO @ Sat, 03 Apr 2021 08:05:35: #1 Redundant rate of treatment: 0.23 INFO @ Sat, 03 Apr 2021 08:05:35: #1 finished! INFO @ Sat, 03 Apr 2021 08:05:35: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:05:35: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:05:36: #2 number of paired peaks: 467 WARNING @ Sat, 03 Apr 2021 08:05:36: Fewer paired peaks (467) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 467 pairs to build model! INFO @ Sat, 03 Apr 2021 08:05:36: start model_add_line... INFO @ Sat, 03 Apr 2021 08:05:36: start X-correlation... INFO @ Sat, 03 Apr 2021 08:05:36: end of X-cor INFO @ Sat, 03 Apr 2021 08:05:36: #2 finished! INFO @ Sat, 03 Apr 2021 08:05:36: #2 predicted fragment length is 58 bps INFO @ Sat, 03 Apr 2021 08:05:36: #2 alternative fragment length(s) may be 4,58,71 bps INFO @ Sat, 03 Apr 2021 08:05:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.20_model.r WARNING @ Sat, 03 Apr 2021 08:05:36: #2 Since the d (58) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:05:36: #2 You may need to consider one of the other alternative d(s): 4,58,71 WARNING @ Sat, 03 Apr 2021 08:05:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:05:36: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:05:36: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:05:52: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:06:14: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:06:14: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:06:14: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.10_summits.bed INFO @ Sat, 03 Apr 2021 08:06:14: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (2482 records, 4 fields): 9 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:06:17: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:06:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:06:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:06:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4664632/SRX4664632.20_summits.bed INFO @ Sat, 03 Apr 2021 08:06:38: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (610 records, 4 fields): 4 millis CompletedMACS2peakCalling