Job ID = 3785842 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... 2019-11-01T05:34:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:34:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:34:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:36:40 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:36:45 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:37:48 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:28 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:36 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:39:52 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:43:32 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:43:39 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:43:39 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:44:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:44:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:45:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:45:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:45:56 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:16 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:33 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:37 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:37 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:46:41 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:47:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:47:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:47:53 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:47:58 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:48:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:49:25 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:49:31 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:49:31 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:01 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:05 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:05 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing '130.14.250.25' from '172.19.7.10' 2019-11-01T05:50:05 fasterq-dump.2.9.6 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (130.14.250.25) from '172.19.7.10' 2019-11-01T05:50:17 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:19 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:50:19 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:51:07 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:52:24 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:53:07 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:53:15 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:53:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:54:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:55:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:55:22 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:55:25 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:55:58 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:56:00 fasterq-dump.2.9.6 sys: error unknown while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:57:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:57:44 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:58:42 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T05:58:57 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:00:04 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:04:47 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-11-01T06:05:30 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 93,741,149 reads read : 187,482,298 reads written : 93,741,149 reads 0-length : 93,741,149 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:10:56 93741149 reads; of these: 93741149 (100.00%) were unpaired; of these: 92372516 (98.54%) aligned 0 times 1069423 (1.14%) aligned exactly 1 time 299210 (0.32%) aligned >1 times 1.46% overall alignment rate Time searching: 00:10:56 Overall time: 00:10:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_rmdupse_core] 937183 / 1368633 = 0.6848 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Fri, 01 Nov 2019 15:38:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 01 Nov 2019 15:38:15: #1 read tag files... INFO @ Fri, 01 Nov 2019 15:38:15: #1 read treatment tags... INFO @ Fri, 01 Nov 2019 15:38:19: #1 tag size is determined as 50 bps INFO @ Fri, 01 Nov 2019 15:38:19: #1 tag size = 50 INFO @ Fri, 01 Nov 2019 15:38:19: #1 total tags in treatment: 431450 INFO @ Fri, 01 Nov 2019 15:38:19: #1 user defined the maximum tags... INFO @ Fri, 01 Nov 2019 15:38:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 01 Nov 2019 15:38:19: #1 tags after filtering in treatment: 431450 INFO @ Fri, 01 Nov 2019 15:38:19: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 01 Nov 2019 15:38:19: #1 finished! INFO @ Fri, 01 Nov 2019 15:38:19: #2 Build Peak Model... INFO @ Fri, 01 Nov 2019 15:38:19: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 01 Nov 2019 15:38:19: #2 number of paired peaks: 3420 INFO @ Fri, 01 Nov 2019 15:38:19: start model_add_line... INFO @ Fri, 01 Nov 2019 15:38:19: start X-correlation... INFO @ Fri, 01 Nov 2019 15:38:19: end of X-cor INFO @ Fri, 01 Nov 2019 15:38:19: #2 finished! INFO @ Fri, 01 Nov 2019 15:38:19: #2 predicted fragment length is 49 bps INFO @ Fri, 01 Nov 2019 15:38:19: #2 alternative fragment length(s) may be 49,125,167,192,253,282,385,513,573 bps INFO @ Fri, 01 Nov 2019 15:38:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.05_model.r WARNING @ Fri, 01 Nov 2019 15:38:19: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 01 Nov 2019 15:38:19: #2 You may need to consider one of the other alternative d(s): 49,125,167,192,253,282,385,513,573 WARNING @ Fri, 01 Nov 2019 15:38:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 01 Nov 2019 15:38:19: #3 Call peaks... INFO @ Fri, 01 Nov 2019 15:38:19: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 01 Nov 2019 15:38:20: #3 Call peaks for each chromosome... INFO @ Fri, 01 Nov 2019 15:38:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.05_peaks.xls INFO @ Fri, 01 Nov 2019 15:38:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.05_peaks.narrowPeak INFO @ Fri, 01 Nov 2019 15:38:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.05_summits.bed INFO @ Fri, 01 Nov 2019 15:38:21: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (580 records, 4 fields): 4 millis CompletedMACS2peakCalling INFO @ Fri, 01 Nov 2019 15:38:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 01 Nov 2019 15:38:45: #1 read tag files... INFO @ Fri, 01 Nov 2019 15:38:45: #1 read treatment tags... INFO @ Fri, 01 Nov 2019 15:38:48: #1 tag size is determined as 50 bps INFO @ Fri, 01 Nov 2019 15:38:48: #1 tag size = 50 INFO @ Fri, 01 Nov 2019 15:38:48: #1 total tags in treatment: 431450 INFO @ Fri, 01 Nov 2019 15:38:48: #1 user defined the maximum tags... INFO @ Fri, 01 Nov 2019 15:38:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 01 Nov 2019 15:38:48: #1 tags after filtering in treatment: 431450 INFO @ Fri, 01 Nov 2019 15:38:48: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 01 Nov 2019 15:38:48: #1 finished! INFO @ Fri, 01 Nov 2019 15:38:48: #2 Build Peak Model... INFO @ Fri, 01 Nov 2019 15:38:48: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 01 Nov 2019 15:38:49: #2 number of paired peaks: 3420 INFO @ Fri, 01 Nov 2019 15:38:49: start model_add_line... INFO @ Fri, 01 Nov 2019 15:38:49: start X-correlation... INFO @ Fri, 01 Nov 2019 15:38:49: end of X-cor INFO @ Fri, 01 Nov 2019 15:38:49: #2 finished! INFO @ Fri, 01 Nov 2019 15:38:49: #2 predicted fragment length is 49 bps INFO @ Fri, 01 Nov 2019 15:38:49: #2 alternative fragment length(s) may be 49,125,167,192,253,282,385,513,573 bps INFO @ Fri, 01 Nov 2019 15:38:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.10_model.r WARNING @ Fri, 01 Nov 2019 15:38:49: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 01 Nov 2019 15:38:49: #2 You may need to consider one of the other alternative d(s): 49,125,167,192,253,282,385,513,573 WARNING @ Fri, 01 Nov 2019 15:38:49: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 01 Nov 2019 15:38:49: #3 Call peaks... INFO @ Fri, 01 Nov 2019 15:38:49: #3 Pre-compute pvalue-qvalue table... INFO @ Fri, 01 Nov 2019 15:38:50: #3 Call peaks for each chromosome... INFO @ Fri, 01 Nov 2019 15:38:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.10_peaks.xls INFO @ Fri, 01 Nov 2019 15:38:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.10_peaks.narrowPeak INFO @ Fri, 01 Nov 2019 15:38:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.10_summits.bed INFO @ Fri, 01 Nov 2019 15:38:51: Done! pass1 - making usageList (11 chroms): 1 millis pass2 - checking and writing primary data (387 records, 4 fields): 3 millis CompletedMACS2peakCalling BedGraph に変換中... INFO @ Fri, 01 Nov 2019 15:39:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 01 Nov 2019 15:39:15: #1 read tag files... INFO @ Fri, 01 Nov 2019 15:39:15: #1 read treatment tags... INFO @ Fri, 01 Nov 2019 15:39:19: #1 tag size is determined as 50 bps INFO @ Fri, 01 Nov 2019 15:39:19: #1 tag size = 50 INFO @ Fri, 01 Nov 2019 15:39:19: #1 total tags in treatment: 431450 INFO @ Fri, 01 Nov 2019 15:39:19: #1 user defined the maximum tags... INFO @ Fri, 01 Nov 2019 15:39:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 01 Nov 2019 15:39:19: #1 tags after filtering in treatment: 431450 INFO @ Fri, 01 Nov 2019 15:39:19: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 01 Nov 2019 15:39:19: #1 finished! INFO @ Fri, 01 Nov 2019 15:39:19: #2 Build Peak Model... INFO @ Fri, 01 Nov 2019 15:39:19: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 01 Nov 2019 15:39:19: #2 number of paired peaks: 3420 INFO @ Fri, 01 Nov 2019 15:39:19: start model_add_line... INFO @ Fri, 01 Nov 2019 15:39:19: start X-correlation... INFO @ Fri, 01 Nov 2019 15:39:19: end of X-cor INFO @ Fri, 01 Nov 2019 15:39:19: #2 finished! INFO @ Fri, 01 Nov 2019 15:39:19: #2 predicted fragment length is 49 bps INFO @ Fri, 01 Nov 2019 15:39:19: #2 alternative fragment length(s) may be 49,125,167,192,253,282,385,513,573 bps INFO @ Fri, 01 Nov 2019 15:39:19: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.20_model.r WARNING @ Fri, 01 Nov 2019 15:39:19: #2 Since the d (49) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Fri, 01 Nov 2019 15:39:19: #2 You may need to consider one of the other alternative d(s): 49,125,167,192,253,282,385,513,573 WARNING @ Fri, 01 Nov 2019 15:39:19: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Fri, 01 Nov 2019 15:39:19: #3 Call peaks... INFO @ Fri, 01 Nov 2019 15:39:19: #3 Pre-compute pvalue-qvalue table... BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 01 Nov 2019 15:39:21: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Fri, 01 Nov 2019 15:39:21: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.20_peaks.xls INFO @ Fri, 01 Nov 2019 15:39:21: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.20_peaks.narrowPeak INFO @ Fri, 01 Nov 2019 15:39:21: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4579176/SRX4579176.20_summits.bed INFO @ Fri, 01 Nov 2019 15:39:21: Done! pass1 - making usageList (11 chroms): 4 millis pass2 - checking and writing primary data (230 records, 4 fields): 2 millis CompletedMACS2peakCalling