Job ID = 12265224 SRX = SRX4517995 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 28222289 spots for SRR7655599/SRR7655599.sra Written 28222289 spots for SRR7655599/SRR7655599.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265459 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:17:34 28222289 reads; of these: 28222289 (100.00%) were paired; of these: 3404517 (12.06%) aligned concordantly 0 times 23381299 (82.85%) aligned concordantly exactly 1 time 1436473 (5.09%) aligned concordantly >1 times ---- 3404517 pairs aligned concordantly 0 times; of these: 1634339 (48.01%) aligned discordantly 1 time ---- 1770178 pairs aligned 0 times concordantly or discordantly; of these: 3540356 mates make up the pairs; of these: 2713238 (76.64%) aligned 0 times 578486 (16.34%) aligned exactly 1 time 248632 (7.02%) aligned >1 times 95.19% overall alignment rate Time searching: 00:17:34 Overall time: 00:17:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1671576 / 26127245 = 0.0640 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:50:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:50:55: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:50:55: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:51:00: 1000000 INFO @ Sat, 03 Apr 2021 06:51:05: 2000000 INFO @ Sat, 03 Apr 2021 06:51:10: 3000000 INFO @ Sat, 03 Apr 2021 06:51:15: 4000000 INFO @ Sat, 03 Apr 2021 06:51:20: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:51:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:51:25: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:51:25: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:51:25: 6000000 INFO @ Sat, 03 Apr 2021 06:51:30: 1000000 INFO @ Sat, 03 Apr 2021 06:51:31: 7000000 INFO @ Sat, 03 Apr 2021 06:51:36: 2000000 INFO @ Sat, 03 Apr 2021 06:51:36: 8000000 INFO @ Sat, 03 Apr 2021 06:51:41: 3000000 INFO @ Sat, 03 Apr 2021 06:51:42: 9000000 INFO @ Sat, 03 Apr 2021 06:51:47: 4000000 INFO @ Sat, 03 Apr 2021 06:51:47: 10000000 INFO @ Sat, 03 Apr 2021 06:51:52: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 06:51:53: 11000000 INFO @ Sat, 03 Apr 2021 06:51:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 06:51:55: #1 read tag files... INFO @ Sat, 03 Apr 2021 06:51:55: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 06:51:58: 6000000 INFO @ Sat, 03 Apr 2021 06:51:58: 12000000 INFO @ Sat, 03 Apr 2021 06:52:00: 1000000 INFO @ Sat, 03 Apr 2021 06:52:04: 7000000 INFO @ Sat, 03 Apr 2021 06:52:04: 13000000 INFO @ Sat, 03 Apr 2021 06:52:06: 2000000 INFO @ Sat, 03 Apr 2021 06:52:09: 8000000 INFO @ Sat, 03 Apr 2021 06:52:10: 14000000 INFO @ Sat, 03 Apr 2021 06:52:11: 3000000 INFO @ Sat, 03 Apr 2021 06:52:15: 9000000 INFO @ Sat, 03 Apr 2021 06:52:15: 15000000 INFO @ Sat, 03 Apr 2021 06:52:17: 4000000 INFO @ Sat, 03 Apr 2021 06:52:21: 10000000 INFO @ Sat, 03 Apr 2021 06:52:21: 16000000 INFO @ Sat, 03 Apr 2021 06:52:23: 5000000 INFO @ Sat, 03 Apr 2021 06:52:26: 11000000 INFO @ Sat, 03 Apr 2021 06:52:27: 17000000 INFO @ Sat, 03 Apr 2021 06:52:28: 6000000 INFO @ Sat, 03 Apr 2021 06:52:32: 12000000 INFO @ Sat, 03 Apr 2021 06:52:32: 18000000 INFO @ Sat, 03 Apr 2021 06:52:34: 7000000 INFO @ Sat, 03 Apr 2021 06:52:38: 13000000 INFO @ Sat, 03 Apr 2021 06:52:38: 19000000 INFO @ Sat, 03 Apr 2021 06:52:39: 8000000 INFO @ Sat, 03 Apr 2021 06:52:43: 14000000 INFO @ Sat, 03 Apr 2021 06:52:44: 20000000 INFO @ Sat, 03 Apr 2021 06:52:45: 9000000 INFO @ Sat, 03 Apr 2021 06:52:49: 15000000 INFO @ Sat, 03 Apr 2021 06:52:49: 21000000 INFO @ Sat, 03 Apr 2021 06:52:51: 10000000 INFO @ Sat, 03 Apr 2021 06:52:55: 16000000 INFO @ Sat, 03 Apr 2021 06:52:55: 22000000 INFO @ Sat, 03 Apr 2021 06:52:56: 11000000 INFO @ Sat, 03 Apr 2021 06:53:00: 17000000 INFO @ Sat, 03 Apr 2021 06:53:01: 23000000 INFO @ Sat, 03 Apr 2021 06:53:02: 12000000 INFO @ Sat, 03 Apr 2021 06:53:06: 18000000 INFO @ Sat, 03 Apr 2021 06:53:06: 24000000 INFO @ Sat, 03 Apr 2021 06:53:08: 13000000 INFO @ Sat, 03 Apr 2021 06:53:12: 19000000 INFO @ Sat, 03 Apr 2021 06:53:12: 25000000 INFO @ Sat, 03 Apr 2021 06:53:13: 14000000 INFO @ Sat, 03 Apr 2021 06:53:18: 26000000 INFO @ Sat, 03 Apr 2021 06:53:18: 20000000 INFO @ Sat, 03 Apr 2021 06:53:19: 15000000 INFO @ Sat, 03 Apr 2021 06:53:23: 27000000 INFO @ Sat, 03 Apr 2021 06:53:24: 21000000 INFO @ Sat, 03 Apr 2021 06:53:24: 16000000 INFO @ Sat, 03 Apr 2021 06:53:29: 28000000 INFO @ Sat, 03 Apr 2021 06:53:29: 22000000 INFO @ Sat, 03 Apr 2021 06:53:30: 17000000 INFO @ Sat, 03 Apr 2021 06:53:35: 29000000 INFO @ Sat, 03 Apr 2021 06:53:35: 23000000 INFO @ Sat, 03 Apr 2021 06:53:36: 18000000 INFO @ Sat, 03 Apr 2021 06:53:40: 30000000 INFO @ Sat, 03 Apr 2021 06:53:41: 24000000 INFO @ Sat, 03 Apr 2021 06:53:41: 19000000 INFO @ Sat, 03 Apr 2021 06:53:46: 31000000 INFO @ Sat, 03 Apr 2021 06:53:46: 25000000 INFO @ Sat, 03 Apr 2021 06:53:47: 20000000 INFO @ Sat, 03 Apr 2021 06:53:51: 32000000 INFO @ Sat, 03 Apr 2021 06:53:52: 26000000 INFO @ Sat, 03 Apr 2021 06:53:52: 21000000 INFO @ Sat, 03 Apr 2021 06:53:57: 33000000 INFO @ Sat, 03 Apr 2021 06:53:58: 27000000 INFO @ Sat, 03 Apr 2021 06:53:58: 22000000 INFO @ Sat, 03 Apr 2021 06:54:03: 34000000 INFO @ Sat, 03 Apr 2021 06:54:03: 28000000 INFO @ Sat, 03 Apr 2021 06:54:04: 23000000 INFO @ Sat, 03 Apr 2021 06:54:08: 35000000 INFO @ Sat, 03 Apr 2021 06:54:09: 29000000 INFO @ Sat, 03 Apr 2021 06:54:10: 24000000 INFO @ Sat, 03 Apr 2021 06:54:14: 36000000 INFO @ Sat, 03 Apr 2021 06:54:14: 30000000 INFO @ Sat, 03 Apr 2021 06:54:15: 25000000 INFO @ Sat, 03 Apr 2021 06:54:19: 37000000 INFO @ Sat, 03 Apr 2021 06:54:20: 31000000 INFO @ Sat, 03 Apr 2021 06:54:21: 26000000 INFO @ Sat, 03 Apr 2021 06:54:25: 38000000 INFO @ Sat, 03 Apr 2021 06:54:26: 32000000 INFO @ Sat, 03 Apr 2021 06:54:26: 27000000 INFO @ Sat, 03 Apr 2021 06:54:31: 39000000 INFO @ Sat, 03 Apr 2021 06:54:31: 33000000 INFO @ Sat, 03 Apr 2021 06:54:32: 28000000 INFO @ Sat, 03 Apr 2021 06:54:36: 40000000 INFO @ Sat, 03 Apr 2021 06:54:37: 34000000 INFO @ Sat, 03 Apr 2021 06:54:38: 29000000 INFO @ Sat, 03 Apr 2021 06:54:42: 41000000 INFO @ Sat, 03 Apr 2021 06:54:43: 35000000 INFO @ Sat, 03 Apr 2021 06:54:43: 30000000 INFO @ Sat, 03 Apr 2021 06:54:48: 42000000 INFO @ Sat, 03 Apr 2021 06:54:48: 36000000 INFO @ Sat, 03 Apr 2021 06:54:49: 31000000 INFO @ Sat, 03 Apr 2021 06:54:53: 43000000 INFO @ Sat, 03 Apr 2021 06:54:54: 37000000 INFO @ Sat, 03 Apr 2021 06:54:54: 32000000 INFO @ Sat, 03 Apr 2021 06:54:59: 44000000 INFO @ Sat, 03 Apr 2021 06:55:00: 38000000 INFO @ Sat, 03 Apr 2021 06:55:00: 33000000 INFO @ Sat, 03 Apr 2021 06:55:05: 45000000 INFO @ Sat, 03 Apr 2021 06:55:05: 39000000 INFO @ Sat, 03 Apr 2021 06:55:06: 34000000 INFO @ Sat, 03 Apr 2021 06:55:10: 46000000 INFO @ Sat, 03 Apr 2021 06:55:11: 40000000 INFO @ Sat, 03 Apr 2021 06:55:11: 35000000 INFO @ Sat, 03 Apr 2021 06:55:16: 47000000 INFO @ Sat, 03 Apr 2021 06:55:16: 41000000 INFO @ Sat, 03 Apr 2021 06:55:17: 36000000 INFO @ Sat, 03 Apr 2021 06:55:22: 48000000 INFO @ Sat, 03 Apr 2021 06:55:22: 42000000 INFO @ Sat, 03 Apr 2021 06:55:22: 37000000 INFO @ Sat, 03 Apr 2021 06:55:27: 49000000 INFO @ Sat, 03 Apr 2021 06:55:28: 38000000 INFO @ Sat, 03 Apr 2021 06:55:28: 43000000 INFO @ Sat, 03 Apr 2021 06:55:33: 50000000 INFO @ Sat, 03 Apr 2021 06:55:33: 39000000 INFO @ Sat, 03 Apr 2021 06:55:33: 44000000 INFO @ Sat, 03 Apr 2021 06:55:35: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 06:55:35: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 06:55:35: #1 total tags in treatment: 23309780 INFO @ Sat, 03 Apr 2021 06:55:35: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:55:35: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:55:36: #1 tags after filtering in treatment: 16643887 INFO @ Sat, 03 Apr 2021 06:55:36: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 06:55:36: #1 finished! INFO @ Sat, 03 Apr 2021 06:55:36: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:55:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:55:37: #2 number of paired peaks: 369 WARNING @ Sat, 03 Apr 2021 06:55:37: Fewer paired peaks (369) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 369 pairs to build model! INFO @ Sat, 03 Apr 2021 06:55:37: start model_add_line... INFO @ Sat, 03 Apr 2021 06:55:37: start X-correlation... INFO @ Sat, 03 Apr 2021 06:55:37: end of X-cor INFO @ Sat, 03 Apr 2021 06:55:37: #2 finished! INFO @ Sat, 03 Apr 2021 06:55:37: #2 predicted fragment length is 67 bps INFO @ Sat, 03 Apr 2021 06:55:37: #2 alternative fragment length(s) may be 67 bps INFO @ Sat, 03 Apr 2021 06:55:37: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.05_model.r WARNING @ Sat, 03 Apr 2021 06:55:37: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 06:55:37: #2 You may need to consider one of the other alternative d(s): 67 WARNING @ Sat, 03 Apr 2021 06:55:37: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 06:55:37: #3 Call peaks... INFO @ Sat, 03 Apr 2021 06:55:37: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 06:55:39: 40000000 INFO @ Sat, 03 Apr 2021 06:55:39: 45000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 06:55:44: 41000000 INFO @ Sat, 03 Apr 2021 06:55:44: 46000000 INFO @ Sat, 03 Apr 2021 06:55:50: 42000000 INFO @ Sat, 03 Apr 2021 06:55:50: 47000000 INFO @ Sat, 03 Apr 2021 06:55:55: 48000000 INFO @ Sat, 03 Apr 2021 06:55:55: 43000000 INFO @ Sat, 03 Apr 2021 06:56:01: 49000000 INFO @ Sat, 03 Apr 2021 06:56:01: 44000000 INFO @ Sat, 03 Apr 2021 06:56:06: 50000000 INFO @ Sat, 03 Apr 2021 06:56:06: 45000000 INFO @ Sat, 03 Apr 2021 06:56:09: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 06:56:09: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 06:56:09: #1 total tags in treatment: 23309780 INFO @ Sat, 03 Apr 2021 06:56:09: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:56:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:56:09: #1 tags after filtering in treatment: 16643887 INFO @ Sat, 03 Apr 2021 06:56:09: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 06:56:09: #1 finished! INFO @ Sat, 03 Apr 2021 06:56:09: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:56:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:56:10: #2 number of paired peaks: 369 WARNING @ Sat, 03 Apr 2021 06:56:10: Fewer paired peaks (369) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 369 pairs to build model! INFO @ Sat, 03 Apr 2021 06:56:10: start model_add_line... INFO @ Sat, 03 Apr 2021 06:56:10: start X-correlation... INFO @ Sat, 03 Apr 2021 06:56:10: end of X-cor INFO @ Sat, 03 Apr 2021 06:56:10: #2 finished! INFO @ Sat, 03 Apr 2021 06:56:10: #2 predicted fragment length is 67 bps INFO @ Sat, 03 Apr 2021 06:56:10: #2 alternative fragment length(s) may be 67 bps INFO @ Sat, 03 Apr 2021 06:56:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.10_model.r WARNING @ Sat, 03 Apr 2021 06:56:10: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 06:56:10: #2 You may need to consider one of the other alternative d(s): 67 WARNING @ Sat, 03 Apr 2021 06:56:10: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 06:56:10: #3 Call peaks... INFO @ Sat, 03 Apr 2021 06:56:10: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 06:56:12: 46000000 INFO @ Sat, 03 Apr 2021 06:56:14: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 06:56:17: 47000000 INFO @ Sat, 03 Apr 2021 06:56:22: 48000000 INFO @ Sat, 03 Apr 2021 06:56:27: 49000000 INFO @ Sat, 03 Apr 2021 06:56:32: 50000000 INFO @ Sat, 03 Apr 2021 06:56:32: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.05_peaks.xls INFO @ Sat, 03 Apr 2021 06:56:32: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 06:56:32: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.05_summits.bed INFO @ Sat, 03 Apr 2021 06:56:32: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (8380 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 06:56:34: #1 tag size is determined as 50 bps INFO @ Sat, 03 Apr 2021 06:56:34: #1 tag size = 50 INFO @ Sat, 03 Apr 2021 06:56:34: #1 total tags in treatment: 23309780 INFO @ Sat, 03 Apr 2021 06:56:34: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 06:56:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 06:56:34: #1 tags after filtering in treatment: 16643887 INFO @ Sat, 03 Apr 2021 06:56:34: #1 Redundant rate of treatment: 0.29 INFO @ Sat, 03 Apr 2021 06:56:34: #1 finished! INFO @ Sat, 03 Apr 2021 06:56:34: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 06:56:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 06:56:36: #2 number of paired peaks: 369 WARNING @ Sat, 03 Apr 2021 06:56:36: Fewer paired peaks (369) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 369 pairs to build model! INFO @ Sat, 03 Apr 2021 06:56:36: start model_add_line... INFO @ Sat, 03 Apr 2021 06:56:36: start X-correlation... INFO @ Sat, 03 Apr 2021 06:56:36: end of X-cor INFO @ Sat, 03 Apr 2021 06:56:36: #2 finished! INFO @ Sat, 03 Apr 2021 06:56:36: #2 predicted fragment length is 67 bps INFO @ Sat, 03 Apr 2021 06:56:36: #2 alternative fragment length(s) may be 67 bps INFO @ Sat, 03 Apr 2021 06:56:36: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.20_model.r WARNING @ Sat, 03 Apr 2021 06:56:36: #2 Since the d (67) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 06:56:36: #2 You may need to consider one of the other alternative d(s): 67 WARNING @ Sat, 03 Apr 2021 06:56:36: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 06:56:36: #3 Call peaks... INFO @ Sat, 03 Apr 2021 06:56:36: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 06:56:47: #3 Call peaks for each chromosome... BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 06:57:06: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.10_peaks.xls INFO @ Sat, 03 Apr 2021 06:57:06: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 06:57:06: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.10_summits.bed INFO @ Sat, 03 Apr 2021 06:57:06: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (3303 records, 4 fields): 5 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 06:57:14: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 06:57:34: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.20_peaks.xls INFO @ Sat, 03 Apr 2021 06:57:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 06:57:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX4517995/SRX4517995.20_summits.bed INFO @ Sat, 03 Apr 2021 06:57:34: Done! pass1 - making usageList (10 chroms): 1 millis pass2 - checking and writing primary data (408 records, 4 fields): 2 millis CompletedMACS2peakCalling