Job ID = 11171364 sra ファイルのダウンロード中... Completed: 1042923K bytes transferred in 11 seconds (742035K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 73482378 spots for /home/okishinya/chipatlas/results/dm3/SRX4315039/SRR7444500.sra Written 73482378 spots for /home/okishinya/chipatlas/results/dm3/SRX4315039/SRR7444500.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:20:47 73482378 reads; of these: 73482378 (100.00%) were unpaired; of these: 8716 (0.01%) aligned 0 times 66255808 (90.17%) aligned exactly 1 time 7217854 (9.82%) aligned >1 times 99.99% overall alignment rate Time searching: 00:20:48 Overall time: 00:20:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdupse_core] 8119871 / 73473662 = 0.1105 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 14:47:32: # Command line: callpeak -t SRX4315039.bam -f BAM -g dm -n SRX4315039.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4315039.10 # format = BAM # ChIP-seq file = ['SRX4315039.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 14:47:32: #1 read tag files... INFO @ Sat, 08 Sep 2018 14:47:32: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 14:47:32: # Command line: callpeak -t SRX4315039.bam -f BAM -g dm -n SRX4315039.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4315039.05 # format = BAM # ChIP-seq file = ['SRX4315039.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 14:47:32: #1 read tag files... INFO @ Sat, 08 Sep 2018 14:47:32: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 14:47:32: # Command line: callpeak -t SRX4315039.bam -f BAM -g dm -n SRX4315039.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4315039.20 # format = BAM # ChIP-seq file = ['SRX4315039.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 14:47:32: #1 read tag files... INFO @ Sat, 08 Sep 2018 14:47:32: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 14:47:39: 1000000 INFO @ Sat, 08 Sep 2018 14:47:39: 1000000 INFO @ Sat, 08 Sep 2018 14:47:39: 1000000 INFO @ Sat, 08 Sep 2018 14:47:46: 2000000 INFO @ Sat, 08 Sep 2018 14:47:46: 2000000 INFO @ Sat, 08 Sep 2018 14:47:46: 2000000 INFO @ Sat, 08 Sep 2018 14:47:52: 3000000 INFO @ Sat, 08 Sep 2018 14:47:52: 3000000 INFO @ Sat, 08 Sep 2018 14:47:53: 3000000 INFO @ Sat, 08 Sep 2018 14:47:59: 4000000 INFO @ Sat, 08 Sep 2018 14:47:59: 4000000 INFO @ Sat, 08 Sep 2018 14:48:00: 4000000 INFO @ Sat, 08 Sep 2018 14:48:06: 5000000 INFO @ Sat, 08 Sep 2018 14:48:06: 5000000 INFO @ Sat, 08 Sep 2018 14:48:07: 5000000 INFO @ Sat, 08 Sep 2018 14:48:13: 6000000 INFO @ Sat, 08 Sep 2018 14:48:13: 6000000 INFO @ Sat, 08 Sep 2018 14:48:14: 6000000 INFO @ Sat, 08 Sep 2018 14:48:20: 7000000 INFO @ Sat, 08 Sep 2018 14:48:20: 7000000 INFO @ Sat, 08 Sep 2018 14:48:21: 7000000 INFO @ Sat, 08 Sep 2018 14:48:26: 8000000 INFO @ Sat, 08 Sep 2018 14:48:27: 8000000 INFO @ Sat, 08 Sep 2018 14:48:28: 8000000 INFO @ Sat, 08 Sep 2018 14:48:33: 9000000 INFO @ Sat, 08 Sep 2018 14:48:33: 9000000 INFO @ Sat, 08 Sep 2018 14:48:35: 9000000 INFO @ Sat, 08 Sep 2018 14:48:39: 10000000 INFO @ Sat, 08 Sep 2018 14:48:40: 10000000 INFO @ Sat, 08 Sep 2018 14:48:41: 10000000 INFO @ Sat, 08 Sep 2018 14:48:46: 11000000 INFO @ Sat, 08 Sep 2018 14:48:46: 11000000 INFO @ Sat, 08 Sep 2018 14:48:48: 11000000 INFO @ Sat, 08 Sep 2018 14:48:53: 12000000 INFO @ Sat, 08 Sep 2018 14:48:53: 12000000 INFO @ Sat, 08 Sep 2018 14:48:54: 12000000 INFO @ Sat, 08 Sep 2018 14:48:59: 13000000 INFO @ Sat, 08 Sep 2018 14:49:00: 13000000 INFO @ Sat, 08 Sep 2018 14:49:01: 13000000 INFO @ Sat, 08 Sep 2018 14:49:06: 14000000 INFO @ Sat, 08 Sep 2018 14:49:06: 14000000 INFO @ Sat, 08 Sep 2018 14:49:08: 14000000 INFO @ Sat, 08 Sep 2018 14:49:12: 15000000 INFO @ Sat, 08 Sep 2018 14:49:13: 15000000 INFO @ Sat, 08 Sep 2018 14:49:14: 15000000 INFO @ Sat, 08 Sep 2018 14:49:19: 16000000 INFO @ Sat, 08 Sep 2018 14:49:19: 16000000 INFO @ Sat, 08 Sep 2018 14:49:21: 16000000 INFO @ Sat, 08 Sep 2018 14:49:26: 17000000 INFO @ Sat, 08 Sep 2018 14:49:26: 17000000 INFO @ Sat, 08 Sep 2018 14:49:27: 17000000 INFO @ Sat, 08 Sep 2018 14:49:32: 18000000 INFO @ Sat, 08 Sep 2018 14:49:33: 18000000 INFO @ Sat, 08 Sep 2018 14:49:34: 18000000 INFO @ Sat, 08 Sep 2018 14:49:39: 19000000 INFO @ Sat, 08 Sep 2018 14:49:40: 19000000 INFO @ Sat, 08 Sep 2018 14:49:41: 19000000 INFO @ Sat, 08 Sep 2018 14:49:46: 20000000 INFO @ Sat, 08 Sep 2018 14:49:46: 20000000 INFO @ Sat, 08 Sep 2018 14:49:47: 20000000 INFO @ Sat, 08 Sep 2018 14:49:52: 21000000 INFO @ Sat, 08 Sep 2018 14:49:53: 21000000 INFO @ Sat, 08 Sep 2018 14:49:54: 21000000 INFO @ Sat, 08 Sep 2018 14:49:59: 22000000 INFO @ Sat, 08 Sep 2018 14:50:00: 22000000 INFO @ Sat, 08 Sep 2018 14:50:01: 22000000 INFO @ Sat, 08 Sep 2018 14:50:06: 23000000 INFO @ Sat, 08 Sep 2018 14:50:07: 23000000 INFO @ Sat, 08 Sep 2018 14:50:09: 23000000 INFO @ Sat, 08 Sep 2018 14:50:14: 24000000 INFO @ Sat, 08 Sep 2018 14:50:14: 24000000 INFO @ Sat, 08 Sep 2018 14:50:16: 24000000 INFO @ Sat, 08 Sep 2018 14:50:20: 25000000 INFO @ Sat, 08 Sep 2018 14:50:21: 25000000 INFO @ Sat, 08 Sep 2018 14:50:23: 25000000 INFO @ Sat, 08 Sep 2018 14:50:27: 26000000 INFO @ Sat, 08 Sep 2018 14:50:28: 26000000 INFO @ Sat, 08 Sep 2018 14:50:30: 26000000 INFO @ Sat, 08 Sep 2018 14:50:34: 27000000 INFO @ Sat, 08 Sep 2018 14:50:35: 27000000 INFO @ Sat, 08 Sep 2018 14:50:37: 27000000 INFO @ Sat, 08 Sep 2018 14:50:40: 28000000 INFO @ Sat, 08 Sep 2018 14:50:42: 28000000 INFO @ Sat, 08 Sep 2018 14:50:44: 28000000 INFO @ Sat, 08 Sep 2018 14:50:47: 29000000 INFO @ Sat, 08 Sep 2018 14:50:49: 29000000 INFO @ Sat, 08 Sep 2018 14:50:50: 29000000 INFO @ Sat, 08 Sep 2018 14:50:54: 30000000 INFO @ Sat, 08 Sep 2018 14:50:56: 30000000 INFO @ Sat, 08 Sep 2018 14:50:57: 30000000 INFO @ Sat, 08 Sep 2018 14:51:00: 31000000 INFO @ Sat, 08 Sep 2018 14:51:03: 31000000 INFO @ Sat, 08 Sep 2018 14:51:04: 31000000 INFO @ Sat, 08 Sep 2018 14:51:07: 32000000 INFO @ Sat, 08 Sep 2018 14:51:10: 32000000 INFO @ Sat, 08 Sep 2018 14:51:11: 32000000 INFO @ Sat, 08 Sep 2018 14:51:14: 33000000 INFO @ Sat, 08 Sep 2018 14:51:16: 33000000 INFO @ Sat, 08 Sep 2018 14:51:17: 33000000 INFO @ Sat, 08 Sep 2018 14:51:21: 34000000 INFO @ Sat, 08 Sep 2018 14:51:23: 34000000 INFO @ Sat, 08 Sep 2018 14:51:24: 34000000 INFO @ Sat, 08 Sep 2018 14:51:28: 35000000 INFO @ Sat, 08 Sep 2018 14:51:30: 35000000 INFO @ Sat, 08 Sep 2018 14:51:31: 35000000 INFO @ Sat, 08 Sep 2018 14:51:34: 36000000 INFO @ Sat, 08 Sep 2018 14:51:37: 36000000 INFO @ Sat, 08 Sep 2018 14:51:37: 36000000 INFO @ Sat, 08 Sep 2018 14:51:41: 37000000 INFO @ Sat, 08 Sep 2018 14:51:43: 37000000 INFO @ Sat, 08 Sep 2018 14:51:44: 37000000 INFO @ Sat, 08 Sep 2018 14:51:48: 38000000 INFO @ Sat, 08 Sep 2018 14:51:50: 38000000 INFO @ Sat, 08 Sep 2018 14:51:50: 38000000 INFO @ Sat, 08 Sep 2018 14:51:54: 39000000 INFO @ Sat, 08 Sep 2018 14:51:57: 39000000 INFO @ Sat, 08 Sep 2018 14:51:57: 39000000 INFO @ Sat, 08 Sep 2018 14:52:01: 40000000 INFO @ Sat, 08 Sep 2018 14:52:04: 40000000 INFO @ Sat, 08 Sep 2018 14:52:04: 40000000 INFO @ Sat, 08 Sep 2018 14:52:08: 41000000 INFO @ Sat, 08 Sep 2018 14:52:10: 41000000 INFO @ Sat, 08 Sep 2018 14:52:10: 41000000 INFO @ Sat, 08 Sep 2018 14:52:15: 42000000 INFO @ Sat, 08 Sep 2018 14:52:17: 42000000 INFO @ Sat, 08 Sep 2018 14:52:17: 42000000 INFO @ Sat, 08 Sep 2018 14:52:21: 43000000 INFO @ Sat, 08 Sep 2018 14:52:24: 43000000 INFO @ Sat, 08 Sep 2018 14:52:24: 43000000 INFO @ Sat, 08 Sep 2018 14:52:28: 44000000 INFO @ Sat, 08 Sep 2018 14:52:30: 44000000 INFO @ Sat, 08 Sep 2018 14:52:31: 44000000 INFO @ Sat, 08 Sep 2018 14:52:35: 45000000 INFO @ Sat, 08 Sep 2018 14:52:37: 45000000 INFO @ Sat, 08 Sep 2018 14:52:38: 45000000 INFO @ Sat, 08 Sep 2018 14:52:42: 46000000 INFO @ Sat, 08 Sep 2018 14:52:43: 46000000 INFO @ Sat, 08 Sep 2018 14:52:45: 46000000 INFO @ Sat, 08 Sep 2018 14:52:49: 47000000 INFO @ Sat, 08 Sep 2018 14:52:50: 47000000 INFO @ Sat, 08 Sep 2018 14:52:52: 47000000 INFO @ Sat, 08 Sep 2018 14:52:56: 48000000 INFO @ Sat, 08 Sep 2018 14:52:57: 48000000 INFO @ Sat, 08 Sep 2018 14:52:59: 48000000 INFO @ Sat, 08 Sep 2018 14:53:03: 49000000 INFO @ Sat, 08 Sep 2018 14:53:03: 49000000 INFO @ Sat, 08 Sep 2018 14:53:06: 49000000 INFO @ Sat, 08 Sep 2018 14:53:10: 50000000 INFO @ Sat, 08 Sep 2018 14:53:10: 50000000 INFO @ Sat, 08 Sep 2018 14:53:13: 50000000 INFO @ Sat, 08 Sep 2018 14:53:17: 51000000 INFO @ Sat, 08 Sep 2018 14:53:17: 51000000 INFO @ Sat, 08 Sep 2018 14:53:20: 51000000 INFO @ Sat, 08 Sep 2018 14:53:23: 52000000 INFO @ Sat, 08 Sep 2018 14:53:24: 52000000 INFO @ Sat, 08 Sep 2018 14:53:27: 52000000 INFO @ Sat, 08 Sep 2018 14:53:30: 53000000 INFO @ Sat, 08 Sep 2018 14:53:31: 53000000 INFO @ Sat, 08 Sep 2018 14:53:34: 53000000 INFO @ Sat, 08 Sep 2018 14:53:37: 54000000 INFO @ Sat, 08 Sep 2018 14:53:38: 54000000 INFO @ Sat, 08 Sep 2018 14:53:42: 54000000 INFO @ Sat, 08 Sep 2018 14:53:44: 55000000 INFO @ Sat, 08 Sep 2018 14:53:45: 55000000 INFO @ Sat, 08 Sep 2018 14:53:49: 55000000 INFO @ Sat, 08 Sep 2018 14:53:50: 56000000 INFO @ Sat, 08 Sep 2018 14:53:52: 56000000 INFO @ Sat, 08 Sep 2018 14:53:56: 56000000 INFO @ Sat, 08 Sep 2018 14:53:57: 57000000 INFO @ Sat, 08 Sep 2018 14:53:59: 57000000 INFO @ Sat, 08 Sep 2018 14:54:02: 57000000 INFO @ Sat, 08 Sep 2018 14:54:04: 58000000 INFO @ Sat, 08 Sep 2018 14:54:06: 58000000 INFO @ Sat, 08 Sep 2018 14:54:09: 58000000 INFO @ Sat, 08 Sep 2018 14:54:10: 59000000 INFO @ Sat, 08 Sep 2018 14:54:13: 59000000 INFO @ Sat, 08 Sep 2018 14:54:16: 59000000 INFO @ Sat, 08 Sep 2018 14:54:17: 60000000 INFO @ Sat, 08 Sep 2018 14:54:19: 60000000 INFO @ Sat, 08 Sep 2018 14:54:23: 60000000 INFO @ Sat, 08 Sep 2018 14:54:23: 61000000 INFO @ Sat, 08 Sep 2018 14:54:26: 61000000 INFO @ Sat, 08 Sep 2018 14:54:30: 61000000 INFO @ Sat, 08 Sep 2018 14:54:30: 62000000 INFO @ Sat, 08 Sep 2018 14:54:33: 62000000 INFO @ Sat, 08 Sep 2018 14:54:36: 62000000 INFO @ Sat, 08 Sep 2018 14:54:36: 63000000 INFO @ Sat, 08 Sep 2018 14:54:40: 63000000 INFO @ Sat, 08 Sep 2018 14:54:43: 64000000 INFO @ Sat, 08 Sep 2018 14:54:43: 63000000 INFO @ Sat, 08 Sep 2018 14:54:46: 64000000 INFO @ Sat, 08 Sep 2018 14:54:50: 64000000 INFO @ Sat, 08 Sep 2018 14:54:50: 65000000 INFO @ Sat, 08 Sep 2018 14:54:53: #1 tag size is determined as 68 bps INFO @ Sat, 08 Sep 2018 14:54:53: #1 tag size = 68 INFO @ Sat, 08 Sep 2018 14:54:53: #1 total tags in treatment: 65353791 INFO @ Sat, 08 Sep 2018 14:54:53: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 14:54:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 14:54:53: 65000000 INFO @ Sat, 08 Sep 2018 14:54:54: #1 tags after filtering in treatment: 65353791 INFO @ Sat, 08 Sep 2018 14:54:54: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 14:54:54: #1 finished! INFO @ Sat, 08 Sep 2018 14:54:54: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 14:54:54: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 14:54:56: #1 tag size is determined as 68 bps INFO @ Sat, 08 Sep 2018 14:54:56: #1 tag size = 68 INFO @ Sat, 08 Sep 2018 14:54:56: #1 total tags in treatment: 65353791 INFO @ Sat, 08 Sep 2018 14:54:56: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 14:54:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 14:54:56: 65000000 INFO @ Sat, 08 Sep 2018 14:54:58: #1 tags after filtering in treatment: 65353791 INFO @ Sat, 08 Sep 2018 14:54:58: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 14:54:58: #1 finished! INFO @ Sat, 08 Sep 2018 14:54:58: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 14:54:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 14:54:58: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 14:54:58: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 14:54:58: Process for pairing-model is terminated! cat: SRX4315039.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4315039.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4315039.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4315039.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 14:54:59: #1 tag size is determined as 68 bps INFO @ Sat, 08 Sep 2018 14:54:59: #1 tag size = 68 INFO @ Sat, 08 Sep 2018 14:54:59: #1 total tags in treatment: 65353791 INFO @ Sat, 08 Sep 2018 14:54:59: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 14:54:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 14:55:01: #1 tags after filtering in treatment: 65353791 INFO @ Sat, 08 Sep 2018 14:55:01: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 14:55:01: #1 finished! INFO @ Sat, 08 Sep 2018 14:55:01: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 14:55:01: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 14:55:02: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 14:55:02: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 14:55:02: Process for pairing-model is terminated! cat: SRX4315039.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4315039.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4315039.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4315039.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 14:55:05: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 14:55:05: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 14:55:05: Process for pairing-model is terminated! cat: SRX4315039.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4315039.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4315039.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4315039.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。