Job ID = 10714563 sra ファイルのダウンロード中... Completed: 2749663K bytes transferred in 27 seconds (827057K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 123043731 spots for /home/okishinya/chipatlas/results/dm3/SRX4047185/SRR7126166.sra Written 123043731 spots for /home/okishinya/chipatlas/results/dm3/SRX4047185/SRR7126166.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:31:35 123043731 reads; of these: 123043731 (100.00%) were unpaired; of these: 29923125 (24.32%) aligned 0 times 74359479 (60.43%) aligned exactly 1 time 18761127 (15.25%) aligned >1 times 75.68% overall alignment rate Time searching: 00:31:35 Overall time: 00:31:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 24720696 / 93120606 = 0.2655 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 03 Jun 2018 14:30:26: # Command line: callpeak -t SRX4047185.bam -f BAM -g dm -n SRX4047185.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX4047185.05 # format = BAM # ChIP-seq file = ['SRX4047185.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 14:30:26: #1 read tag files... INFO @ Sun, 03 Jun 2018 14:30:26: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 14:30:26: # Command line: callpeak -t SRX4047185.bam -f BAM -g dm -n SRX4047185.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX4047185.20 # format = BAM # ChIP-seq file = ['SRX4047185.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 14:30:26: #1 read tag files... INFO @ Sun, 03 Jun 2018 14:30:26: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 14:30:26: # Command line: callpeak -t SRX4047185.bam -f BAM -g dm -n SRX4047185.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX4047185.10 # format = BAM # ChIP-seq file = ['SRX4047185.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 03 Jun 2018 14:30:26: #1 read tag files... INFO @ Sun, 03 Jun 2018 14:30:26: #1 read treatment tags... INFO @ Sun, 03 Jun 2018 14:30:35: 1000000 INFO @ Sun, 03 Jun 2018 14:30:35: 1000000 INFO @ Sun, 03 Jun 2018 14:30:35: 1000000 INFO @ Sun, 03 Jun 2018 14:30:44: 2000000 INFO @ Sun, 03 Jun 2018 14:30:44: 2000000 INFO @ Sun, 03 Jun 2018 14:30:44: 2000000 INFO @ Sun, 03 Jun 2018 14:30:53: 3000000 INFO @ Sun, 03 Jun 2018 14:30:53: 3000000 INFO @ Sun, 03 Jun 2018 14:30:53: 3000000 INFO @ Sun, 03 Jun 2018 14:31:02: 4000000 INFO @ Sun, 03 Jun 2018 14:31:02: 4000000 INFO @ Sun, 03 Jun 2018 14:31:02: 4000000 INFO @ Sun, 03 Jun 2018 14:31:11: 5000000 INFO @ Sun, 03 Jun 2018 14:31:11: 5000000 INFO @ Sun, 03 Jun 2018 14:31:11: 5000000 INFO @ Sun, 03 Jun 2018 14:31:20: 6000000 INFO @ Sun, 03 Jun 2018 14:31:20: 6000000 INFO @ Sun, 03 Jun 2018 14:31:20: 6000000 INFO @ Sun, 03 Jun 2018 14:31:29: 7000000 INFO @ Sun, 03 Jun 2018 14:31:29: 7000000 INFO @ Sun, 03 Jun 2018 14:31:29: 7000000 INFO @ Sun, 03 Jun 2018 14:31:40: 8000000 INFO @ Sun, 03 Jun 2018 14:31:40: 8000000 INFO @ Sun, 03 Jun 2018 14:31:40: 8000000 INFO @ Sun, 03 Jun 2018 14:31:50: 9000000 INFO @ Sun, 03 Jun 2018 14:31:52: 9000000 INFO @ Sun, 03 Jun 2018 14:31:52: 9000000 INFO @ Sun, 03 Jun 2018 14:32:01: 10000000 INFO @ Sun, 03 Jun 2018 14:32:03: 10000000 INFO @ Sun, 03 Jun 2018 14:32:03: 10000000 INFO @ Sun, 03 Jun 2018 14:32:11: 11000000 INFO @ Sun, 03 Jun 2018 14:32:14: 11000000 INFO @ Sun, 03 Jun 2018 14:32:14: 11000000 INFO @ Sun, 03 Jun 2018 14:32:22: 12000000 INFO @ Sun, 03 Jun 2018 14:32:26: 12000000 INFO @ Sun, 03 Jun 2018 14:32:26: 12000000 INFO @ Sun, 03 Jun 2018 14:32:32: 13000000 INFO @ Sun, 03 Jun 2018 14:32:36: 13000000 INFO @ Sun, 03 Jun 2018 14:32:36: 13000000 INFO @ Sun, 03 Jun 2018 14:32:41: 14000000 INFO @ Sun, 03 Jun 2018 14:32:45: 14000000 INFO @ Sun, 03 Jun 2018 14:32:45: 14000000 INFO @ Sun, 03 Jun 2018 14:32:50: 15000000 INFO @ Sun, 03 Jun 2018 14:32:55: 15000000 INFO @ Sun, 03 Jun 2018 14:32:55: 15000000 INFO @ Sun, 03 Jun 2018 14:32:59: 16000000 INFO @ Sun, 03 Jun 2018 14:33:04: 16000000 INFO @ Sun, 03 Jun 2018 14:33:04: 16000000 INFO @ Sun, 03 Jun 2018 14:33:07: 17000000 INFO @ Sun, 03 Jun 2018 14:33:13: 17000000 INFO @ Sun, 03 Jun 2018 14:33:13: 17000000 INFO @ Sun, 03 Jun 2018 14:33:16: 18000000 INFO @ Sun, 03 Jun 2018 14:33:22: 18000000 INFO @ Sun, 03 Jun 2018 14:33:22: 18000000 INFO @ Sun, 03 Jun 2018 14:33:25: 19000000 INFO @ Sun, 03 Jun 2018 14:33:32: 19000000 INFO @ Sun, 03 Jun 2018 14:33:32: 19000000 INFO @ Sun, 03 Jun 2018 14:33:33: 20000000 INFO @ Sun, 03 Jun 2018 14:33:41: 20000000 INFO @ Sun, 03 Jun 2018 14:33:41: 20000000 INFO @ Sun, 03 Jun 2018 14:33:42: 21000000 INFO @ Sun, 03 Jun 2018 14:33:50: 21000000 INFO @ Sun, 03 Jun 2018 14:33:50: 21000000 INFO @ Sun, 03 Jun 2018 14:33:51: 22000000 INFO @ Sun, 03 Jun 2018 14:33:59: 22000000 INFO @ Sun, 03 Jun 2018 14:33:59: 22000000 INFO @ Sun, 03 Jun 2018 14:34:00: 23000000 INFO @ Sun, 03 Jun 2018 14:34:08: 24000000 INFO @ Sun, 03 Jun 2018 14:34:08: 23000000 INFO @ Sun, 03 Jun 2018 14:34:08: 23000000 INFO @ Sun, 03 Jun 2018 14:34:17: 25000000 INFO @ Sun, 03 Jun 2018 14:34:18: 24000000 INFO @ Sun, 03 Jun 2018 14:34:18: 24000000 INFO @ Sun, 03 Jun 2018 14:34:26: 26000000 INFO @ Sun, 03 Jun 2018 14:34:27: 25000000 INFO @ Sun, 03 Jun 2018 14:34:27: 25000000 INFO @ Sun, 03 Jun 2018 14:34:35: 27000000 INFO @ Sun, 03 Jun 2018 14:34:36: 26000000 INFO @ Sun, 03 Jun 2018 14:34:36: 26000000 INFO @ Sun, 03 Jun 2018 14:34:43: 28000000 INFO @ Sun, 03 Jun 2018 14:34:46: 27000000 INFO @ Sun, 03 Jun 2018 14:34:46: 27000000 INFO @ Sun, 03 Jun 2018 14:34:52: 29000000 INFO @ Sun, 03 Jun 2018 14:34:55: 28000000 INFO @ Sun, 03 Jun 2018 14:34:55: 28000000 INFO @ Sun, 03 Jun 2018 14:35:01: 30000000 INFO @ Sun, 03 Jun 2018 14:35:04: 29000000 INFO @ Sun, 03 Jun 2018 14:35:04: 29000000 INFO @ Sun, 03 Jun 2018 14:35:10: 31000000 INFO @ Sun, 03 Jun 2018 14:35:13: 30000000 INFO @ Sun, 03 Jun 2018 14:35:13: 30000000 INFO @ Sun, 03 Jun 2018 14:35:18: 32000000 INFO @ Sun, 03 Jun 2018 14:35:22: 31000000 INFO @ Sun, 03 Jun 2018 14:35:22: 31000000 INFO @ Sun, 03 Jun 2018 14:35:27: 33000000 INFO @ Sun, 03 Jun 2018 14:35:32: 32000000 INFO @ Sun, 03 Jun 2018 14:35:32: 32000000 INFO @ Sun, 03 Jun 2018 14:35:36: 34000000 INFO @ Sun, 03 Jun 2018 14:35:41: 33000000 INFO @ Sun, 03 Jun 2018 14:35:41: 33000000 INFO @ Sun, 03 Jun 2018 14:35:44: 35000000 INFO @ Sun, 03 Jun 2018 14:35:50: 34000000 INFO @ Sun, 03 Jun 2018 14:35:50: 34000000 INFO @ Sun, 03 Jun 2018 14:35:53: 36000000 INFO @ Sun, 03 Jun 2018 14:36:00: 35000000 INFO @ Sun, 03 Jun 2018 14:36:00: 35000000 INFO @ Sun, 03 Jun 2018 14:36:02: 37000000 INFO @ Sun, 03 Jun 2018 14:36:09: 36000000 INFO @ Sun, 03 Jun 2018 14:36:09: 36000000 INFO @ Sun, 03 Jun 2018 14:36:12: 38000000 INFO @ Sun, 03 Jun 2018 14:36:19: 37000000 INFO @ Sun, 03 Jun 2018 14:36:19: 37000000 INFO @ Sun, 03 Jun 2018 14:36:21: 39000000 INFO @ Sun, 03 Jun 2018 14:36:28: 38000000 INFO @ Sun, 03 Jun 2018 14:36:28: 38000000 INFO @ Sun, 03 Jun 2018 14:36:30: 40000000 INFO @ Sun, 03 Jun 2018 14:36:38: 39000000 INFO @ Sun, 03 Jun 2018 14:36:38: 39000000 INFO @ Sun, 03 Jun 2018 14:36:39: 41000000 INFO @ Sun, 03 Jun 2018 14:36:47: 40000000 INFO @ Sun, 03 Jun 2018 14:36:47: 40000000 INFO @ Sun, 03 Jun 2018 14:36:48: 42000000 INFO @ Sun, 03 Jun 2018 14:36:57: 41000000 INFO @ Sun, 03 Jun 2018 14:36:57: 41000000 INFO @ Sun, 03 Jun 2018 14:36:57: 43000000 INFO @ Sun, 03 Jun 2018 14:37:06: 44000000 INFO @ Sun, 03 Jun 2018 14:37:06: 42000000 INFO @ Sun, 03 Jun 2018 14:37:06: 42000000 INFO @ Sun, 03 Jun 2018 14:37:15: 45000000 INFO @ Sun, 03 Jun 2018 14:37:16: 43000000 INFO @ Sun, 03 Jun 2018 14:37:16: 43000000 INFO @ Sun, 03 Jun 2018 14:37:24: 46000000 INFO @ Sun, 03 Jun 2018 14:37:25: 44000000 INFO @ Sun, 03 Jun 2018 14:37:25: 44000000 INFO @ Sun, 03 Jun 2018 14:37:34: 47000000 INFO @ Sun, 03 Jun 2018 14:37:35: 45000000 INFO @ Sun, 03 Jun 2018 14:37:35: 45000000 INFO @ Sun, 03 Jun 2018 14:37:43: 46000000 INFO @ Sun, 03 Jun 2018 14:37:43: 46000000 INFO @ Sun, 03 Jun 2018 14:37:43: 48000000 INFO @ Sun, 03 Jun 2018 14:37:51: 47000000 INFO @ Sun, 03 Jun 2018 14:37:51: 47000000 INFO @ Sun, 03 Jun 2018 14:37:52: 49000000 INFO @ Sun, 03 Jun 2018 14:37:58: 48000000 INFO @ Sun, 03 Jun 2018 14:37:58: 48000000 INFO @ Sun, 03 Jun 2018 14:38:01: 50000000 INFO @ Sun, 03 Jun 2018 14:38:06: 49000000 INFO @ Sun, 03 Jun 2018 14:38:06: 49000000 INFO @ Sun, 03 Jun 2018 14:38:10: 51000000 INFO @ Sun, 03 Jun 2018 14:38:14: 50000000 INFO @ Sun, 03 Jun 2018 14:38:14: 50000000 INFO @ Sun, 03 Jun 2018 14:38:19: 52000000 INFO @ Sun, 03 Jun 2018 14:38:22: 51000000 INFO @ Sun, 03 Jun 2018 14:38:22: 51000000 INFO @ Sun, 03 Jun 2018 14:38:27: 53000000 INFO @ Sun, 03 Jun 2018 14:38:29: 52000000 INFO @ Sun, 03 Jun 2018 14:38:29: 52000000 INFO @ Sun, 03 Jun 2018 14:38:36: 54000000 INFO @ Sun, 03 Jun 2018 14:38:37: 53000000 INFO @ Sun, 03 Jun 2018 14:38:37: 53000000 INFO @ Sun, 03 Jun 2018 14:38:45: 54000000 INFO @ Sun, 03 Jun 2018 14:38:45: 54000000 INFO @ Sun, 03 Jun 2018 14:38:45: 55000000 INFO @ Sun, 03 Jun 2018 14:38:53: 55000000 INFO @ Sun, 03 Jun 2018 14:38:53: 55000000 INFO @ Sun, 03 Jun 2018 14:38:54: 56000000 INFO @ Sun, 03 Jun 2018 14:39:00: 56000000 INFO @ Sun, 03 Jun 2018 14:39:00: 56000000 INFO @ Sun, 03 Jun 2018 14:39:02: 57000000 INFO @ Sun, 03 Jun 2018 14:39:08: 57000000 INFO @ Sun, 03 Jun 2018 14:39:08: 57000000 INFO @ Sun, 03 Jun 2018 14:39:09: 58000000 INFO @ Sun, 03 Jun 2018 14:39:16: 58000000 INFO @ Sun, 03 Jun 2018 14:39:16: 58000000 INFO @ Sun, 03 Jun 2018 14:39:17: 59000000 INFO @ Sun, 03 Jun 2018 14:39:23: 59000000 INFO @ Sun, 03 Jun 2018 14:39:23: 59000000 INFO @ Sun, 03 Jun 2018 14:39:24: 60000000 INFO @ Sun, 03 Jun 2018 14:39:31: 60000000 INFO @ Sun, 03 Jun 2018 14:39:31: 60000000 INFO @ Sun, 03 Jun 2018 14:39:32: 61000000 INFO @ Sun, 03 Jun 2018 14:39:39: 61000000 INFO @ Sun, 03 Jun 2018 14:39:39: 61000000 INFO @ Sun, 03 Jun 2018 14:39:40: 62000000 INFO @ Sun, 03 Jun 2018 14:39:47: 62000000 INFO @ Sun, 03 Jun 2018 14:39:47: 62000000 INFO @ Sun, 03 Jun 2018 14:39:47: 63000000 INFO @ Sun, 03 Jun 2018 14:39:54: 63000000 INFO @ Sun, 03 Jun 2018 14:39:54: 63000000 INFO @ Sun, 03 Jun 2018 14:39:55: 64000000 INFO @ Sun, 03 Jun 2018 14:40:02: 64000000 INFO @ Sun, 03 Jun 2018 14:40:02: 64000000 INFO @ Sun, 03 Jun 2018 14:40:03: 65000000 INFO @ Sun, 03 Jun 2018 14:40:10: 65000000 INFO @ Sun, 03 Jun 2018 14:40:10: 65000000 INFO @ Sun, 03 Jun 2018 14:40:10: 66000000 INFO @ Sun, 03 Jun 2018 14:40:17: 66000000 INFO @ Sun, 03 Jun 2018 14:40:17: 66000000 INFO @ Sun, 03 Jun 2018 14:40:18: 67000000 INFO @ Sun, 03 Jun 2018 14:40:25: 67000000 INFO @ Sun, 03 Jun 2018 14:40:25: 67000000 INFO @ Sun, 03 Jun 2018 14:40:26: 68000000 INFO @ Sun, 03 Jun 2018 14:40:29: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 14:40:29: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 14:40:29: #1 total tags in treatment: 68399910 INFO @ Sun, 03 Jun 2018 14:40:29: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 14:40:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 14:40:31: #1 tags after filtering in treatment: 68399910 INFO @ Sun, 03 Jun 2018 14:40:31: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 03 Jun 2018 14:40:31: #1 finished! INFO @ Sun, 03 Jun 2018 14:40:31: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 14:40:31: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 14:40:33: 68000000 INFO @ Sun, 03 Jun 2018 14:40:33: 68000000 INFO @ Sun, 03 Jun 2018 14:40:35: #2 number of paired peaks: 0 WARNING @ Sun, 03 Jun 2018 14:40:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 14:40:35: Process for pairing-model is terminated! cat: SRX4047185.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4047185.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4047185.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4047185.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 14:40:36: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 14:40:36: #1 tag size is determined as 51 bps INFO @ Sun, 03 Jun 2018 14:40:36: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 14:40:36: #1 tag size = 51 INFO @ Sun, 03 Jun 2018 14:40:36: #1 total tags in treatment: 68399910 INFO @ Sun, 03 Jun 2018 14:40:36: #1 total tags in treatment: 68399910 INFO @ Sun, 03 Jun 2018 14:40:36: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 14:40:36: #1 user defined the maximum tags... INFO @ Sun, 03 Jun 2018 14:40:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 14:40:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 03 Jun 2018 14:40:38: #1 tags after filtering in treatment: 68399910 INFO @ Sun, 03 Jun 2018 14:40:38: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 03 Jun 2018 14:40:38: #1 finished! INFO @ Sun, 03 Jun 2018 14:40:38: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 14:40:38: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 14:40:38: #1 tags after filtering in treatment: 68399910 INFO @ Sun, 03 Jun 2018 14:40:38: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 03 Jun 2018 14:40:38: #1 finished! INFO @ Sun, 03 Jun 2018 14:40:38: #2 Build Peak Model... INFO @ Sun, 03 Jun 2018 14:40:38: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 03 Jun 2018 14:40:42: #2 number of paired peaks: 0 WARNING @ Sun, 03 Jun 2018 14:40:42: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 14:40:42: Process for pairing-model is terminated! cat: SRX4047185.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4047185.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4047185.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4047185.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sun, 03 Jun 2018 14:40:43: #2 number of paired peaks: 0 WARNING @ Sun, 03 Jun 2018 14:40:43: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 03 Jun 2018 14:40:43: Process for pairing-model is terminated! cat: SRX4047185.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX4047185.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4047185.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX4047185.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。