Job ID = 1295418 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-03T04:37:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T04:37:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T04:37:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T04:37:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T04:37:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-03T04:37:09 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 47,473,525 reads read : 94,947,050 reads written : 94,947,050 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:14:48 47473525 reads; of these: 47473525 (100.00%) were paired; of these: 7357961 (15.50%) aligned concordantly 0 times 31346067 (66.03%) aligned concordantly exactly 1 time 8769497 (18.47%) aligned concordantly >1 times ---- 7357961 pairs aligned concordantly 0 times; of these: 83466 (1.13%) aligned discordantly 1 time ---- 7274495 pairs aligned 0 times concordantly or discordantly; of these: 14548990 mates make up the pairs; of these: 12993621 (89.31%) aligned 0 times 933984 (6.42%) aligned exactly 1 time 621385 (4.27%) aligned >1 times 86.31% overall alignment rate Time searching: 01:14:48 Overall time: 01:14:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1323274 / 40150831 = 0.0330 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 15:48:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:48:41: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:48:41: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:48:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:48:41: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:48:41: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:48:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 15:48:41: #1 read tag files... INFO @ Mon, 03 Jun 2019 15:48:41: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 15:48:48: 1000000 INFO @ Mon, 03 Jun 2019 15:48:49: 1000000 INFO @ Mon, 03 Jun 2019 15:48:50: 1000000 INFO @ Mon, 03 Jun 2019 15:48:56: 2000000 INFO @ Mon, 03 Jun 2019 15:48:56: 2000000 INFO @ Mon, 03 Jun 2019 15:48:59: 2000000 INFO @ Mon, 03 Jun 2019 15:49:03: 3000000 INFO @ Mon, 03 Jun 2019 15:49:03: 3000000 INFO @ Mon, 03 Jun 2019 15:49:08: 3000000 INFO @ Mon, 03 Jun 2019 15:49:10: 4000000 INFO @ Mon, 03 Jun 2019 15:49:10: 4000000 INFO @ Mon, 03 Jun 2019 15:49:17: 5000000 INFO @ Mon, 03 Jun 2019 15:49:17: 4000000 INFO @ Mon, 03 Jun 2019 15:49:17: 5000000 INFO @ Mon, 03 Jun 2019 15:49:24: 6000000 INFO @ Mon, 03 Jun 2019 15:49:24: 6000000 INFO @ Mon, 03 Jun 2019 15:49:26: 5000000 INFO @ Mon, 03 Jun 2019 15:49:30: 7000000 INFO @ Mon, 03 Jun 2019 15:49:31: 7000000 INFO @ Mon, 03 Jun 2019 15:49:35: 6000000 INFO @ Mon, 03 Jun 2019 15:49:37: 8000000 INFO @ Mon, 03 Jun 2019 15:49:38: 8000000 INFO @ Mon, 03 Jun 2019 15:49:44: 9000000 INFO @ Mon, 03 Jun 2019 15:49:44: 7000000 INFO @ Mon, 03 Jun 2019 15:49:45: 9000000 INFO @ Mon, 03 Jun 2019 15:49:51: 10000000 INFO @ Mon, 03 Jun 2019 15:49:52: 10000000 INFO @ Mon, 03 Jun 2019 15:49:53: 8000000 INFO @ Mon, 03 Jun 2019 15:49:58: 11000000 INFO @ Mon, 03 Jun 2019 15:49:59: 11000000 INFO @ Mon, 03 Jun 2019 15:50:02: 9000000 INFO @ Mon, 03 Jun 2019 15:50:04: 12000000 INFO @ Mon, 03 Jun 2019 15:50:06: 12000000 INFO @ Mon, 03 Jun 2019 15:50:11: 13000000 INFO @ Mon, 03 Jun 2019 15:50:11: 10000000 INFO @ Mon, 03 Jun 2019 15:50:13: 13000000 INFO @ Mon, 03 Jun 2019 15:50:18: 14000000 INFO @ Mon, 03 Jun 2019 15:50:20: 14000000 INFO @ Mon, 03 Jun 2019 15:50:20: 11000000 INFO @ Mon, 03 Jun 2019 15:50:25: 15000000 INFO @ Mon, 03 Jun 2019 15:50:27: 15000000 INFO @ Mon, 03 Jun 2019 15:50:29: 12000000 INFO @ Mon, 03 Jun 2019 15:50:32: 16000000 INFO @ Mon, 03 Jun 2019 15:50:34: 16000000 INFO @ Mon, 03 Jun 2019 15:50:38: 17000000 INFO @ Mon, 03 Jun 2019 15:50:39: 13000000 INFO @ Mon, 03 Jun 2019 15:50:41: 17000000 INFO @ Mon, 03 Jun 2019 15:50:45: 18000000 INFO @ Mon, 03 Jun 2019 15:50:47: 14000000 INFO @ Mon, 03 Jun 2019 15:50:48: 18000000 INFO @ Mon, 03 Jun 2019 15:50:52: 19000000 INFO @ Mon, 03 Jun 2019 15:50:55: 19000000 INFO @ Mon, 03 Jun 2019 15:50:56: 15000000 INFO @ Mon, 03 Jun 2019 15:50:59: 20000000 INFO @ Mon, 03 Jun 2019 15:51:02: 20000000 INFO @ Mon, 03 Jun 2019 15:51:04: 16000000 INFO @ Mon, 03 Jun 2019 15:51:05: 21000000 INFO @ Mon, 03 Jun 2019 15:51:09: 21000000 INFO @ Mon, 03 Jun 2019 15:51:12: 22000000 INFO @ Mon, 03 Jun 2019 15:51:14: 17000000 INFO @ Mon, 03 Jun 2019 15:51:16: 22000000 INFO @ Mon, 03 Jun 2019 15:51:19: 23000000 INFO @ Mon, 03 Jun 2019 15:51:22: 18000000 INFO @ Mon, 03 Jun 2019 15:51:23: 23000000 INFO @ Mon, 03 Jun 2019 15:51:26: 24000000 INFO @ Mon, 03 Jun 2019 15:51:30: 24000000 INFO @ Mon, 03 Jun 2019 15:51:31: 19000000 INFO @ Mon, 03 Jun 2019 15:51:33: 25000000 INFO @ Mon, 03 Jun 2019 15:51:37: 25000000 INFO @ Mon, 03 Jun 2019 15:51:39: 26000000 INFO @ Mon, 03 Jun 2019 15:51:40: 20000000 INFO @ Mon, 03 Jun 2019 15:51:44: 26000000 INFO @ Mon, 03 Jun 2019 15:51:46: 27000000 INFO @ Mon, 03 Jun 2019 15:51:49: 21000000 INFO @ Mon, 03 Jun 2019 15:51:50: 27000000 INFO @ Mon, 03 Jun 2019 15:51:53: 28000000 INFO @ Mon, 03 Jun 2019 15:51:57: 28000000 INFO @ Mon, 03 Jun 2019 15:51:58: 22000000 INFO @ Mon, 03 Jun 2019 15:52:00: 29000000 INFO @ Mon, 03 Jun 2019 15:52:04: 29000000 INFO @ Mon, 03 Jun 2019 15:52:06: 30000000 INFO @ Mon, 03 Jun 2019 15:52:07: 23000000 INFO @ Mon, 03 Jun 2019 15:52:11: 30000000 INFO @ Mon, 03 Jun 2019 15:52:13: 31000000 INFO @ Mon, 03 Jun 2019 15:52:16: 24000000 INFO @ Mon, 03 Jun 2019 15:52:18: 31000000 INFO @ Mon, 03 Jun 2019 15:52:21: 32000000 INFO @ Mon, 03 Jun 2019 15:52:25: 32000000 INFO @ Mon, 03 Jun 2019 15:52:26: 25000000 INFO @ Mon, 03 Jun 2019 15:52:28: 33000000 INFO @ Mon, 03 Jun 2019 15:52:32: 33000000 INFO @ Mon, 03 Jun 2019 15:52:34: 26000000 INFO @ Mon, 03 Jun 2019 15:52:35: 34000000 INFO @ Mon, 03 Jun 2019 15:52:39: 34000000 INFO @ Mon, 03 Jun 2019 15:52:43: 35000000 INFO @ Mon, 03 Jun 2019 15:52:43: 27000000 INFO @ Mon, 03 Jun 2019 15:52:46: 35000000 INFO @ Mon, 03 Jun 2019 15:52:50: 36000000 INFO @ Mon, 03 Jun 2019 15:52:52: 28000000 INFO @ Mon, 03 Jun 2019 15:52:53: 36000000 INFO @ Mon, 03 Jun 2019 15:52:57: 37000000 INFO @ Mon, 03 Jun 2019 15:53:00: 37000000 INFO @ Mon, 03 Jun 2019 15:53:00: 29000000 INFO @ Mon, 03 Jun 2019 15:53:04: 38000000 INFO @ Mon, 03 Jun 2019 15:53:06: 38000000 INFO @ Mon, 03 Jun 2019 15:53:08: 30000000 INFO @ Mon, 03 Jun 2019 15:53:11: 39000000 INFO @ Mon, 03 Jun 2019 15:53:13: 39000000 INFO @ Mon, 03 Jun 2019 15:53:15: 31000000 INFO @ Mon, 03 Jun 2019 15:53:19: 40000000 INFO @ Mon, 03 Jun 2019 15:53:20: 40000000 INFO @ Mon, 03 Jun 2019 15:53:25: 32000000 INFO @ Mon, 03 Jun 2019 15:53:26: 41000000 INFO @ Mon, 03 Jun 2019 15:53:27: 41000000 INFO @ Mon, 03 Jun 2019 15:53:34: 42000000 INFO @ Mon, 03 Jun 2019 15:53:34: 42000000 INFO @ Mon, 03 Jun 2019 15:53:34: 33000000 INFO @ Mon, 03 Jun 2019 15:53:41: 43000000 INFO @ Mon, 03 Jun 2019 15:53:41: 43000000 INFO @ Mon, 03 Jun 2019 15:53:44: 34000000 INFO @ Mon, 03 Jun 2019 15:53:49: 44000000 INFO @ Mon, 03 Jun 2019 15:53:49: 44000000 INFO @ Mon, 03 Jun 2019 15:53:53: 35000000 INFO @ Mon, 03 Jun 2019 15:53:56: 45000000 INFO @ Mon, 03 Jun 2019 15:53:56: 45000000 INFO @ Mon, 03 Jun 2019 15:54:02: 36000000 INFO @ Mon, 03 Jun 2019 15:54:03: 46000000 INFO @ Mon, 03 Jun 2019 15:54:04: 46000000 INFO @ Mon, 03 Jun 2019 15:54:11: 47000000 INFO @ Mon, 03 Jun 2019 15:54:11: 47000000 INFO @ Mon, 03 Jun 2019 15:54:11: 37000000 INFO @ Mon, 03 Jun 2019 15:54:17: 48000000 INFO @ Mon, 03 Jun 2019 15:54:18: 48000000 INFO @ Mon, 03 Jun 2019 15:54:20: 38000000 INFO @ Mon, 03 Jun 2019 15:54:24: 49000000 INFO @ Mon, 03 Jun 2019 15:54:26: 49000000 INFO @ Mon, 03 Jun 2019 15:54:29: 39000000 INFO @ Mon, 03 Jun 2019 15:54:31: 50000000 INFO @ Mon, 03 Jun 2019 15:54:33: 50000000 INFO @ Mon, 03 Jun 2019 15:54:38: 40000000 INFO @ Mon, 03 Jun 2019 15:54:38: 51000000 INFO @ Mon, 03 Jun 2019 15:54:40: 51000000 INFO @ Mon, 03 Jun 2019 15:54:45: 52000000 INFO @ Mon, 03 Jun 2019 15:54:47: 41000000 INFO @ Mon, 03 Jun 2019 15:54:48: 52000000 INFO @ Mon, 03 Jun 2019 15:54:52: 53000000 INFO @ Mon, 03 Jun 2019 15:54:55: 53000000 INFO @ Mon, 03 Jun 2019 15:54:56: 42000000 INFO @ Mon, 03 Jun 2019 15:54:59: 54000000 INFO @ Mon, 03 Jun 2019 15:55:02: 54000000 INFO @ Mon, 03 Jun 2019 15:55:05: 43000000 INFO @ Mon, 03 Jun 2019 15:55:06: 55000000 INFO @ Mon, 03 Jun 2019 15:55:09: 55000000 INFO @ Mon, 03 Jun 2019 15:55:14: 56000000 INFO @ Mon, 03 Jun 2019 15:55:15: 44000000 INFO @ Mon, 03 Jun 2019 15:55:16: 56000000 INFO @ Mon, 03 Jun 2019 15:55:21: 57000000 INFO @ Mon, 03 Jun 2019 15:55:23: 57000000 INFO @ Mon, 03 Jun 2019 15:55:24: 45000000 INFO @ Mon, 03 Jun 2019 15:55:28: 58000000 INFO @ Mon, 03 Jun 2019 15:55:30: 58000000 INFO @ Mon, 03 Jun 2019 15:55:33: 46000000 INFO @ Mon, 03 Jun 2019 15:55:36: 59000000 INFO @ Mon, 03 Jun 2019 15:55:38: 59000000 INFO @ Mon, 03 Jun 2019 15:55:43: 47000000 INFO @ Mon, 03 Jun 2019 15:55:43: 60000000 INFO @ Mon, 03 Jun 2019 15:55:45: 60000000 INFO @ Mon, 03 Jun 2019 15:55:51: 61000000 INFO @ Mon, 03 Jun 2019 15:55:52: 48000000 INFO @ Mon, 03 Jun 2019 15:55:52: 61000000 INFO @ Mon, 03 Jun 2019 15:55:58: 62000000 INFO @ Mon, 03 Jun 2019 15:55:59: 62000000 INFO @ Mon, 03 Jun 2019 15:56:01: 49000000 INFO @ Mon, 03 Jun 2019 15:56:06: 63000000 INFO @ Mon, 03 Jun 2019 15:56:07: 63000000 INFO @ Mon, 03 Jun 2019 15:56:10: 50000000 INFO @ Mon, 03 Jun 2019 15:56:13: 64000000 INFO @ Mon, 03 Jun 2019 15:56:14: 64000000 INFO @ Mon, 03 Jun 2019 15:56:19: 51000000 INFO @ Mon, 03 Jun 2019 15:56:21: 65000000 INFO @ Mon, 03 Jun 2019 15:56:21: 65000000 INFO @ Mon, 03 Jun 2019 15:56:28: 52000000 INFO @ Mon, 03 Jun 2019 15:56:29: 66000000 INFO @ Mon, 03 Jun 2019 15:56:29: 66000000 INFO @ Mon, 03 Jun 2019 15:56:36: 67000000 INFO @ Mon, 03 Jun 2019 15:56:37: 67000000 INFO @ Mon, 03 Jun 2019 15:56:37: 53000000 INFO @ Mon, 03 Jun 2019 15:56:43: 68000000 INFO @ Mon, 03 Jun 2019 15:56:44: 68000000 INFO @ Mon, 03 Jun 2019 15:56:46: 54000000 INFO @ Mon, 03 Jun 2019 15:56:50: 69000000 INFO @ Mon, 03 Jun 2019 15:56:51: 69000000 INFO @ Mon, 03 Jun 2019 15:56:55: 55000000 INFO @ Mon, 03 Jun 2019 15:56:58: 70000000 INFO @ Mon, 03 Jun 2019 15:56:59: 70000000 INFO @ Mon, 03 Jun 2019 15:57:04: 56000000 INFO @ Mon, 03 Jun 2019 15:57:05: 71000000 INFO @ Mon, 03 Jun 2019 15:57:07: 71000000 INFO @ Mon, 03 Jun 2019 15:57:12: 72000000 INFO @ Mon, 03 Jun 2019 15:57:13: 57000000 INFO @ Mon, 03 Jun 2019 15:57:14: 72000000 INFO @ Mon, 03 Jun 2019 15:57:19: 73000000 INFO @ Mon, 03 Jun 2019 15:57:21: 73000000 INFO @ Mon, 03 Jun 2019 15:57:22: 58000000 INFO @ Mon, 03 Jun 2019 15:57:27: 74000000 INFO @ Mon, 03 Jun 2019 15:57:29: 74000000 INFO @ Mon, 03 Jun 2019 15:57:31: 59000000 INFO @ Mon, 03 Jun 2019 15:57:34: 75000000 INFO @ Mon, 03 Jun 2019 15:57:36: 75000000 INFO @ Mon, 03 Jun 2019 15:57:40: 60000000 INFO @ Mon, 03 Jun 2019 15:57:41: 76000000 INFO @ Mon, 03 Jun 2019 15:57:44: 76000000 INFO @ Mon, 03 Jun 2019 15:57:48: 77000000 INFO @ Mon, 03 Jun 2019 15:57:49: 61000000 INFO @ Mon, 03 Jun 2019 15:57:51: 77000000 INFO @ Mon, 03 Jun 2019 15:57:55: 78000000 INFO @ Mon, 03 Jun 2019 15:57:57: 62000000 INFO @ Mon, 03 Jun 2019 15:57:59: 78000000 INFO @ Mon, 03 Jun 2019 15:58:03: 79000000 INFO @ Mon, 03 Jun 2019 15:58:05: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:58:05: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:58:05: #1 total tags in treatment: 38792840 INFO @ Mon, 03 Jun 2019 15:58:05: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:58:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:58:06: 63000000 INFO @ Mon, 03 Jun 2019 15:58:06: #1 tags after filtering in treatment: 20871568 INFO @ Mon, 03 Jun 2019 15:58:06: #1 Redundant rate of treatment: 0.46 INFO @ Mon, 03 Jun 2019 15:58:06: #1 finished! INFO @ Mon, 03 Jun 2019 15:58:06: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:58:06: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:58:07: 79000000 INFO @ Mon, 03 Jun 2019 15:58:10: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 15:58:10: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 15:58:10: #1 total tags in treatment: 38792840 INFO @ Mon, 03 Jun 2019 15:58:10: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 15:58:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 15:58:10: #2 number of paired peaks: 11539 INFO @ Mon, 03 Jun 2019 15:58:10: start model_add_line... INFO @ Mon, 03 Jun 2019 15:58:10: start X-correlation... INFO @ Mon, 03 Jun 2019 15:58:10: end of X-cor INFO @ Mon, 03 Jun 2019 15:58:10: #2 finished! INFO @ Mon, 03 Jun 2019 15:58:10: #2 predicted fragment length is 106 bps INFO @ Mon, 03 Jun 2019 15:58:10: #2 alternative fragment length(s) may be 106 bps INFO @ Mon, 03 Jun 2019 15:58:10: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.20_model.r INFO @ Mon, 03 Jun 2019 15:58:10: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:58:10: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:58:11: #1 tags after filtering in treatment: 20871568 INFO @ Mon, 03 Jun 2019 15:58:11: #1 Redundant rate of treatment: 0.46 INFO @ Mon, 03 Jun 2019 15:58:11: #1 finished! INFO @ Mon, 03 Jun 2019 15:58:11: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 15:58:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 15:58:14: #2 number of paired peaks: 11539 INFO @ Mon, 03 Jun 2019 15:58:14: start model_add_line... INFO @ Mon, 03 Jun 2019 15:58:15: start X-correlation... INFO @ Mon, 03 Jun 2019 15:58:15: end of X-cor INFO @ Mon, 03 Jun 2019 15:58:15: #2 finished! INFO @ Mon, 03 Jun 2019 15:58:15: #2 predicted fragment length is 106 bps INFO @ Mon, 03 Jun 2019 15:58:15: #2 alternative fragment length(s) may be 106 bps INFO @ Mon, 03 Jun 2019 15:58:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.05_model.r INFO @ Mon, 03 Jun 2019 15:58:15: #3 Call peaks... INFO @ Mon, 03 Jun 2019 15:58:15: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 15:58:15: 64000000 INFO @ Mon, 03 Jun 2019 15:58:24: 65000000 INFO @ Mon, 03 Jun 2019 15:58:32: 66000000 INFO @ Mon, 03 Jun 2019 15:58:41: 67000000 INFO @ Mon, 03 Jun 2019 15:58:49: 68000000 INFO @ Mon, 03 Jun 2019 15:58:58: 69000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 15:59:07: 70000000 INFO @ Mon, 03 Jun 2019 15:59:07: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:59:12: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 15:59:15: 71000000 INFO @ Mon, 03 Jun 2019 15:59:24: 72000000 INFO @ Mon, 03 Jun 2019 15:59:30: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.20_peaks.xls INFO @ Mon, 03 Jun 2019 15:59:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:59:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.20_summits.bed INFO @ Mon, 03 Jun 2019 15:59:31: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (9804 records, 4 fields): 14 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:59:32: 73000000 INFO @ Mon, 03 Jun 2019 15:59:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.05_peaks.xls INFO @ Mon, 03 Jun 2019 15:59:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 15:59:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.05_summits.bed INFO @ Mon, 03 Jun 2019 15:59:35: Done! pass1 - making usageList (14 chroms): 6 millis pass2 - checking and writing primary data (13994 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 15:59:41: 74000000 INFO @ Mon, 03 Jun 2019 15:59:48: 75000000 INFO @ Mon, 03 Jun 2019 15:59:55: 76000000 INFO @ Mon, 03 Jun 2019 16:00:02: 77000000 INFO @ Mon, 03 Jun 2019 16:00:08: 78000000 INFO @ Mon, 03 Jun 2019 16:00:16: 79000000 INFO @ Mon, 03 Jun 2019 16:00:19: #1 tag size is determined as 42 bps INFO @ Mon, 03 Jun 2019 16:00:19: #1 tag size = 42 INFO @ Mon, 03 Jun 2019 16:00:19: #1 total tags in treatment: 38792840 INFO @ Mon, 03 Jun 2019 16:00:19: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 16:00:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 16:00:19: #1 tags after filtering in treatment: 20871568 INFO @ Mon, 03 Jun 2019 16:00:19: #1 Redundant rate of treatment: 0.46 INFO @ Mon, 03 Jun 2019 16:00:19: #1 finished! INFO @ Mon, 03 Jun 2019 16:00:19: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 16:00:19: #2 looking for paired plus/minus strand peaks... BigWig に変換しました。 INFO @ Mon, 03 Jun 2019 16:00:23: #2 number of paired peaks: 11539 INFO @ Mon, 03 Jun 2019 16:00:23: start model_add_line... INFO @ Mon, 03 Jun 2019 16:00:23: start X-correlation... INFO @ Mon, 03 Jun 2019 16:00:23: end of X-cor INFO @ Mon, 03 Jun 2019 16:00:23: #2 finished! INFO @ Mon, 03 Jun 2019 16:00:23: #2 predicted fragment length is 106 bps INFO @ Mon, 03 Jun 2019 16:00:23: #2 alternative fragment length(s) may be 106 bps INFO @ Mon, 03 Jun 2019 16:00:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.10_model.r INFO @ Mon, 03 Jun 2019 16:00:23: #3 Call peaks... INFO @ Mon, 03 Jun 2019 16:00:23: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 16:01:21: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 16:01:44: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.10_peaks.xls INFO @ Mon, 03 Jun 2019 16:01:45: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 16:01:45: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3393637/SRX3393637.10_summits.bed INFO @ Mon, 03 Jun 2019 16:01:45: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (12122 records, 4 fields): 17 millis CompletedMACS2peakCalling