Job ID = 12265174 SRX = SRX3104591 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 31165523 spots for SRR5946196/SRR5946196.sra Written 31165523 spots for SRR5946196/SRR5946196.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265581 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:35:19 31165523 reads; of these: 31165523 (100.00%) were paired; of these: 9827007 (31.53%) aligned concordantly 0 times 19359254 (62.12%) aligned concordantly exactly 1 time 1979262 (6.35%) aligned concordantly >1 times ---- 9827007 pairs aligned concordantly 0 times; of these: 3757256 (38.23%) aligned discordantly 1 time ---- 6069751 pairs aligned 0 times concordantly or discordantly; of these: 12139502 mates make up the pairs; of these: 10719338 (88.30%) aligned 0 times 736030 (6.06%) aligned exactly 1 time 684134 (5.64%) aligned >1 times 82.80% overall alignment rate Time searching: 00:35:19 Overall time: 00:35:19 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2343559 / 24906046 = 0.0941 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:30:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:30:17: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:30:17: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:30:24: 1000000 INFO @ Sat, 03 Apr 2021 07:30:31: 2000000 INFO @ Sat, 03 Apr 2021 07:30:38: 3000000 INFO @ Sat, 03 Apr 2021 07:30:45: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:30:47: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:30:47: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:30:47: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:30:53: 5000000 INFO @ Sat, 03 Apr 2021 07:30:55: 1000000 INFO @ Sat, 03 Apr 2021 07:31:00: 6000000 INFO @ Sat, 03 Apr 2021 07:31:01: 2000000 INFO @ Sat, 03 Apr 2021 07:31:07: 7000000 INFO @ Sat, 03 Apr 2021 07:31:08: 3000000 INFO @ Sat, 03 Apr 2021 07:31:15: 4000000 INFO @ Sat, 03 Apr 2021 07:31:15: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:31:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:31:17: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:31:17: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:31:21: 5000000 INFO @ Sat, 03 Apr 2021 07:31:22: 9000000 INFO @ Sat, 03 Apr 2021 07:31:25: 1000000 INFO @ Sat, 03 Apr 2021 07:31:28: 6000000 INFO @ Sat, 03 Apr 2021 07:31:30: 10000000 INFO @ Sat, 03 Apr 2021 07:31:32: 2000000 INFO @ Sat, 03 Apr 2021 07:31:35: 7000000 INFO @ Sat, 03 Apr 2021 07:31:38: 11000000 INFO @ Sat, 03 Apr 2021 07:31:38: 3000000 INFO @ Sat, 03 Apr 2021 07:31:42: 8000000 INFO @ Sat, 03 Apr 2021 07:31:45: 12000000 INFO @ Sat, 03 Apr 2021 07:31:45: 4000000 INFO @ Sat, 03 Apr 2021 07:31:48: 9000000 INFO @ Sat, 03 Apr 2021 07:31:52: 5000000 INFO @ Sat, 03 Apr 2021 07:31:53: 13000000 INFO @ Sat, 03 Apr 2021 07:31:55: 10000000 INFO @ Sat, 03 Apr 2021 07:31:59: 6000000 INFO @ Sat, 03 Apr 2021 07:32:00: 14000000 INFO @ Sat, 03 Apr 2021 07:32:02: 11000000 INFO @ Sat, 03 Apr 2021 07:32:06: 7000000 INFO @ Sat, 03 Apr 2021 07:32:08: 15000000 INFO @ Sat, 03 Apr 2021 07:32:09: 12000000 INFO @ Sat, 03 Apr 2021 07:32:12: 8000000 INFO @ Sat, 03 Apr 2021 07:32:16: 13000000 INFO @ Sat, 03 Apr 2021 07:32:16: 16000000 INFO @ Sat, 03 Apr 2021 07:32:19: 9000000 INFO @ Sat, 03 Apr 2021 07:32:22: 14000000 INFO @ Sat, 03 Apr 2021 07:32:24: 17000000 INFO @ Sat, 03 Apr 2021 07:32:26: 10000000 INFO @ Sat, 03 Apr 2021 07:32:29: 15000000 INFO @ Sat, 03 Apr 2021 07:32:31: 18000000 INFO @ Sat, 03 Apr 2021 07:32:33: 11000000 INFO @ Sat, 03 Apr 2021 07:32:36: 16000000 INFO @ Sat, 03 Apr 2021 07:32:39: 19000000 INFO @ Sat, 03 Apr 2021 07:32:39: 12000000 INFO @ Sat, 03 Apr 2021 07:32:42: 17000000 INFO @ Sat, 03 Apr 2021 07:32:46: 13000000 INFO @ Sat, 03 Apr 2021 07:32:46: 20000000 INFO @ Sat, 03 Apr 2021 07:32:49: 18000000 INFO @ Sat, 03 Apr 2021 07:32:53: 14000000 INFO @ Sat, 03 Apr 2021 07:32:54: 21000000 INFO @ Sat, 03 Apr 2021 07:32:56: 19000000 INFO @ Sat, 03 Apr 2021 07:33:00: 15000000 INFO @ Sat, 03 Apr 2021 07:33:01: 22000000 INFO @ Sat, 03 Apr 2021 07:33:03: 20000000 INFO @ Sat, 03 Apr 2021 07:33:06: 16000000 INFO @ Sat, 03 Apr 2021 07:33:09: 23000000 INFO @ Sat, 03 Apr 2021 07:33:09: 21000000 INFO @ Sat, 03 Apr 2021 07:33:13: 17000000 INFO @ Sat, 03 Apr 2021 07:33:16: 22000000 INFO @ Sat, 03 Apr 2021 07:33:17: 24000000 INFO @ Sat, 03 Apr 2021 07:33:20: 18000000 INFO @ Sat, 03 Apr 2021 07:33:23: 23000000 INFO @ Sat, 03 Apr 2021 07:33:24: 25000000 INFO @ Sat, 03 Apr 2021 07:33:26: 19000000 INFO @ Sat, 03 Apr 2021 07:33:30: 24000000 INFO @ Sat, 03 Apr 2021 07:33:32: 26000000 INFO @ Sat, 03 Apr 2021 07:33:33: 20000000 INFO @ Sat, 03 Apr 2021 07:33:36: 25000000 INFO @ Sat, 03 Apr 2021 07:33:39: 27000000 INFO @ Sat, 03 Apr 2021 07:33:40: 21000000 INFO @ Sat, 03 Apr 2021 07:33:43: 26000000 INFO @ Sat, 03 Apr 2021 07:33:47: 22000000 INFO @ Sat, 03 Apr 2021 07:33:47: 28000000 INFO @ Sat, 03 Apr 2021 07:33:50: 27000000 INFO @ Sat, 03 Apr 2021 07:33:53: 23000000 INFO @ Sat, 03 Apr 2021 07:33:54: 29000000 INFO @ Sat, 03 Apr 2021 07:33:56: 28000000 INFO @ Sat, 03 Apr 2021 07:34:00: 24000000 INFO @ Sat, 03 Apr 2021 07:34:02: 30000000 INFO @ Sat, 03 Apr 2021 07:34:03: 29000000 INFO @ Sat, 03 Apr 2021 07:34:06: 25000000 INFO @ Sat, 03 Apr 2021 07:34:09: 31000000 INFO @ Sat, 03 Apr 2021 07:34:10: 30000000 INFO @ Sat, 03 Apr 2021 07:34:13: 26000000 INFO @ Sat, 03 Apr 2021 07:34:16: 31000000 INFO @ Sat, 03 Apr 2021 07:34:17: 32000000 INFO @ Sat, 03 Apr 2021 07:34:20: 27000000 INFO @ Sat, 03 Apr 2021 07:34:23: 32000000 INFO @ Sat, 03 Apr 2021 07:34:25: 33000000 INFO @ Sat, 03 Apr 2021 07:34:26: 28000000 INFO @ Sat, 03 Apr 2021 07:34:30: 33000000 INFO @ Sat, 03 Apr 2021 07:34:32: 34000000 INFO @ Sat, 03 Apr 2021 07:34:33: 29000000 INFO @ Sat, 03 Apr 2021 07:34:36: 34000000 INFO @ Sat, 03 Apr 2021 07:34:40: 35000000 INFO @ Sat, 03 Apr 2021 07:34:40: 30000000 INFO @ Sat, 03 Apr 2021 07:34:43: 35000000 INFO @ Sat, 03 Apr 2021 07:34:46: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:34:47: 36000000 INFO @ Sat, 03 Apr 2021 07:34:49: 36000000 INFO @ Sat, 03 Apr 2021 07:34:53: 32000000 INFO @ Sat, 03 Apr 2021 07:34:55: 37000000 INFO @ Sat, 03 Apr 2021 07:34:56: 37000000 INFO @ Sat, 03 Apr 2021 07:35:00: 33000000 INFO @ Sat, 03 Apr 2021 07:35:02: 38000000 INFO @ Sat, 03 Apr 2021 07:35:03: 38000000 INFO @ Sat, 03 Apr 2021 07:35:07: 34000000 INFO @ Sat, 03 Apr 2021 07:35:10: 39000000 INFO @ Sat, 03 Apr 2021 07:35:10: 39000000 INFO @ Sat, 03 Apr 2021 07:35:13: 35000000 INFO @ Sat, 03 Apr 2021 07:35:18: 40000000 INFO @ Sat, 03 Apr 2021 07:35:18: 40000000 INFO @ Sat, 03 Apr 2021 07:35:20: 36000000 INFO @ Sat, 03 Apr 2021 07:35:25: 41000000 INFO @ Sat, 03 Apr 2021 07:35:26: 41000000 INFO @ Sat, 03 Apr 2021 07:35:26: 37000000 INFO @ Sat, 03 Apr 2021 07:35:33: 42000000 INFO @ Sat, 03 Apr 2021 07:35:33: 38000000 INFO @ Sat, 03 Apr 2021 07:35:33: 42000000 INFO @ Sat, 03 Apr 2021 07:35:40: 39000000 INFO @ Sat, 03 Apr 2021 07:35:40: 43000000 INFO @ Sat, 03 Apr 2021 07:35:41: 43000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:35:47: 40000000 INFO @ Sat, 03 Apr 2021 07:35:48: 44000000 INFO @ Sat, 03 Apr 2021 07:35:48: 44000000 INFO @ Sat, 03 Apr 2021 07:35:53: 41000000 INFO @ Sat, 03 Apr 2021 07:35:55: 45000000 INFO @ Sat, 03 Apr 2021 07:35:56: 45000000 INFO @ Sat, 03 Apr 2021 07:36:00: 42000000 INFO @ Sat, 03 Apr 2021 07:36:03: 46000000 INFO @ Sat, 03 Apr 2021 07:36:04: 46000000 INFO @ Sat, 03 Apr 2021 07:36:06: 43000000 INFO @ Sat, 03 Apr 2021 07:36:10: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:36:10: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:36:10: #1 total tags in treatment: 19386255 INFO @ Sat, 03 Apr 2021 07:36:10: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:36:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:36:11: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:36:11: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:36:11: #1 total tags in treatment: 19386255 INFO @ Sat, 03 Apr 2021 07:36:11: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:36:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:36:11: #1 tags after filtering in treatment: 12145211 INFO @ Sat, 03 Apr 2021 07:36:11: #1 Redundant rate of treatment: 0.37 INFO @ Sat, 03 Apr 2021 07:36:11: #1 finished! INFO @ Sat, 03 Apr 2021 07:36:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:36:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:36:11: #1 tags after filtering in treatment: 12145211 INFO @ Sat, 03 Apr 2021 07:36:11: #1 Redundant rate of treatment: 0.37 INFO @ Sat, 03 Apr 2021 07:36:11: #1 finished! INFO @ Sat, 03 Apr 2021 07:36:11: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:36:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:36:12: #2 number of paired peaks: 3527 INFO @ Sat, 03 Apr 2021 07:36:12: start model_add_line... INFO @ Sat, 03 Apr 2021 07:36:12: start X-correlation... INFO @ Sat, 03 Apr 2021 07:36:12: end of X-cor INFO @ Sat, 03 Apr 2021 07:36:12: #2 finished! INFO @ Sat, 03 Apr 2021 07:36:12: #2 predicted fragment length is 116 bps INFO @ Sat, 03 Apr 2021 07:36:12: #2 alternative fragment length(s) may be 116 bps INFO @ Sat, 03 Apr 2021 07:36:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.05_model.r WARNING @ Sat, 03 Apr 2021 07:36:12: #2 Since the d (116) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:36:12: #2 You may need to consider one of the other alternative d(s): 116 WARNING @ Sat, 03 Apr 2021 07:36:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:36:12: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:36:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:36:12: #2 number of paired peaks: 3527 INFO @ Sat, 03 Apr 2021 07:36:12: start model_add_line... INFO @ Sat, 03 Apr 2021 07:36:12: start X-correlation... INFO @ Sat, 03 Apr 2021 07:36:12: end of X-cor INFO @ Sat, 03 Apr 2021 07:36:12: #2 finished! INFO @ Sat, 03 Apr 2021 07:36:12: #2 predicted fragment length is 116 bps INFO @ Sat, 03 Apr 2021 07:36:12: #2 alternative fragment length(s) may be 116 bps INFO @ Sat, 03 Apr 2021 07:36:12: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.10_model.r WARNING @ Sat, 03 Apr 2021 07:36:12: #2 Since the d (116) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:36:12: #2 You may need to consider one of the other alternative d(s): 116 WARNING @ Sat, 03 Apr 2021 07:36:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:36:12: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:36:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:36:13: 44000000 INFO @ Sat, 03 Apr 2021 07:36:19: 45000000 INFO @ Sat, 03 Apr 2021 07:36:25: 46000000 INFO @ Sat, 03 Apr 2021 07:36:31: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:36:31: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:36:31: #1 total tags in treatment: 19386255 INFO @ Sat, 03 Apr 2021 07:36:31: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:36:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:36:31: #1 tags after filtering in treatment: 12145211 INFO @ Sat, 03 Apr 2021 07:36:31: #1 Redundant rate of treatment: 0.37 INFO @ Sat, 03 Apr 2021 07:36:31: #1 finished! INFO @ Sat, 03 Apr 2021 07:36:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:36:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:36:32: #2 number of paired peaks: 3527 INFO @ Sat, 03 Apr 2021 07:36:32: start model_add_line... INFO @ Sat, 03 Apr 2021 07:36:32: start X-correlation... INFO @ Sat, 03 Apr 2021 07:36:32: end of X-cor INFO @ Sat, 03 Apr 2021 07:36:32: #2 finished! INFO @ Sat, 03 Apr 2021 07:36:32: #2 predicted fragment length is 116 bps INFO @ Sat, 03 Apr 2021 07:36:32: #2 alternative fragment length(s) may be 116 bps INFO @ Sat, 03 Apr 2021 07:36:32: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.20_model.r WARNING @ Sat, 03 Apr 2021 07:36:32: #2 Since the d (116) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:36:32: #2 You may need to consider one of the other alternative d(s): 116 WARNING @ Sat, 03 Apr 2021 07:36:32: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:36:32: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:36:32: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:36:41: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:36:42: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:36:57: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:36:57: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:36:57: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.10_summits.bed INFO @ Sat, 03 Apr 2021 07:36:57: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (11062 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:36:58: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:36:58: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:36:58: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.05_summits.bed INFO @ Sat, 03 Apr 2021 07:36:58: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (16162 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:37:01: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:37:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:37:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:37:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104591/SRX3104591.20_summits.bed INFO @ Sat, 03 Apr 2021 07:37:17: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (5329 records, 4 fields): 6 millis CompletedMACS2peakCalling