Job ID = 12265170 SRX = SRX3104587 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 36511208 spots for SRR5946192/SRR5946192.sra Written 36511208 spots for SRR5946192/SRR5946192.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265662 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:01:56 36511208 reads; of these: 36511208 (100.00%) were paired; of these: 10816631 (29.63%) aligned concordantly 0 times 22737562 (62.28%) aligned concordantly exactly 1 time 2957015 (8.10%) aligned concordantly >1 times ---- 10816631 pairs aligned concordantly 0 times; of these: 5557462 (51.38%) aligned discordantly 1 time ---- 5259169 pairs aligned 0 times concordantly or discordantly; of these: 10518338 mates make up the pairs; of these: 8560014 (81.38%) aligned 0 times 879076 (8.36%) aligned exactly 1 time 1079248 (10.26%) aligned >1 times 88.28% overall alignment rate Time searching: 01:01:56 Overall time: 01:01:56 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 4984460 / 31088330 = 0.1603 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:03:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:03:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:03:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:03:34: 1000000 INFO @ Sat, 03 Apr 2021 08:03:45: 2000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:03:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:03:53: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:03:53: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:03:56: 3000000 INFO @ Sat, 03 Apr 2021 08:04:04: 1000000 INFO @ Sat, 03 Apr 2021 08:04:07: 4000000 INFO @ Sat, 03 Apr 2021 08:04:16: 2000000 INFO @ Sat, 03 Apr 2021 08:04:18: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:04:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:04:23: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:04:23: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:04:28: 3000000 INFO @ Sat, 03 Apr 2021 08:04:29: 6000000 INFO @ Sat, 03 Apr 2021 08:04:36: 1000000 INFO @ Sat, 03 Apr 2021 08:04:41: 7000000 INFO @ Sat, 03 Apr 2021 08:04:42: 4000000 INFO @ Sat, 03 Apr 2021 08:04:49: 2000000 INFO @ Sat, 03 Apr 2021 08:04:51: 8000000 INFO @ Sat, 03 Apr 2021 08:04:55: 5000000 INFO @ Sat, 03 Apr 2021 08:05:02: 9000000 INFO @ Sat, 03 Apr 2021 08:05:02: 3000000 INFO @ Sat, 03 Apr 2021 08:05:08: 6000000 INFO @ Sat, 03 Apr 2021 08:05:13: 10000000 INFO @ Sat, 03 Apr 2021 08:05:15: 4000000 INFO @ Sat, 03 Apr 2021 08:05:21: 7000000 INFO @ Sat, 03 Apr 2021 08:05:23: 11000000 INFO @ Sat, 03 Apr 2021 08:05:28: 5000000 INFO @ Sat, 03 Apr 2021 08:05:33: 8000000 INFO @ Sat, 03 Apr 2021 08:05:33: 12000000 INFO @ Sat, 03 Apr 2021 08:05:40: 6000000 INFO @ Sat, 03 Apr 2021 08:05:44: 9000000 INFO @ Sat, 03 Apr 2021 08:05:44: 13000000 INFO @ Sat, 03 Apr 2021 08:05:53: 7000000 INFO @ Sat, 03 Apr 2021 08:05:55: 14000000 INFO @ Sat, 03 Apr 2021 08:05:56: 10000000 INFO @ Sat, 03 Apr 2021 08:06:05: 8000000 INFO @ Sat, 03 Apr 2021 08:06:05: 15000000 INFO @ Sat, 03 Apr 2021 08:06:07: 11000000 INFO @ Sat, 03 Apr 2021 08:06:17: 16000000 INFO @ Sat, 03 Apr 2021 08:06:17: 9000000 INFO @ Sat, 03 Apr 2021 08:06:19: 12000000 INFO @ Sat, 03 Apr 2021 08:06:28: 17000000 INFO @ Sat, 03 Apr 2021 08:06:29: 10000000 INFO @ Sat, 03 Apr 2021 08:06:30: 13000000 INFO @ Sat, 03 Apr 2021 08:06:39: 18000000 INFO @ Sat, 03 Apr 2021 08:06:40: 11000000 INFO @ Sat, 03 Apr 2021 08:06:41: 14000000 INFO @ Sat, 03 Apr 2021 08:06:49: 19000000 INFO @ Sat, 03 Apr 2021 08:06:50: 15000000 INFO @ Sat, 03 Apr 2021 08:06:50: 12000000 INFO @ Sat, 03 Apr 2021 08:06:59: 20000000 INFO @ Sat, 03 Apr 2021 08:06:59: 16000000 INFO @ Sat, 03 Apr 2021 08:07:01: 13000000 INFO @ Sat, 03 Apr 2021 08:07:08: 17000000 INFO @ Sat, 03 Apr 2021 08:07:09: 21000000 INFO @ Sat, 03 Apr 2021 08:07:12: 14000000 INFO @ Sat, 03 Apr 2021 08:07:17: 18000000 INFO @ Sat, 03 Apr 2021 08:07:20: 22000000 INFO @ Sat, 03 Apr 2021 08:07:23: 15000000 INFO @ Sat, 03 Apr 2021 08:07:26: 19000000 INFO @ Sat, 03 Apr 2021 08:07:30: 23000000 INFO @ Sat, 03 Apr 2021 08:07:34: 16000000 INFO @ Sat, 03 Apr 2021 08:07:34: 20000000 INFO @ Sat, 03 Apr 2021 08:07:41: 24000000 INFO @ Sat, 03 Apr 2021 08:07:43: 21000000 INFO @ Sat, 03 Apr 2021 08:07:46: 17000000 INFO @ Sat, 03 Apr 2021 08:07:51: 25000000 INFO @ Sat, 03 Apr 2021 08:07:52: 22000000 INFO @ Sat, 03 Apr 2021 08:07:57: 18000000 INFO @ Sat, 03 Apr 2021 08:08:01: 23000000 INFO @ Sat, 03 Apr 2021 08:08:01: 26000000 INFO @ Sat, 03 Apr 2021 08:08:07: 19000000 INFO @ Sat, 03 Apr 2021 08:08:09: 24000000 INFO @ Sat, 03 Apr 2021 08:08:11: 27000000 INFO @ Sat, 03 Apr 2021 08:08:18: 25000000 INFO @ Sat, 03 Apr 2021 08:08:18: 20000000 INFO @ Sat, 03 Apr 2021 08:08:21: 28000000 INFO @ Sat, 03 Apr 2021 08:08:27: 26000000 INFO @ Sat, 03 Apr 2021 08:08:29: 21000000 INFO @ Sat, 03 Apr 2021 08:08:31: 29000000 INFO @ Sat, 03 Apr 2021 08:08:35: 27000000 INFO @ Sat, 03 Apr 2021 08:08:40: 30000000 INFO @ Sat, 03 Apr 2021 08:08:40: 22000000 INFO @ Sat, 03 Apr 2021 08:08:43: 28000000 INFO @ Sat, 03 Apr 2021 08:08:50: 31000000 INFO @ Sat, 03 Apr 2021 08:08:52: 23000000 INFO @ Sat, 03 Apr 2021 08:08:52: 29000000 INFO @ Sat, 03 Apr 2021 08:08:59: 32000000 INFO @ Sat, 03 Apr 2021 08:09:01: 30000000 INFO @ Sat, 03 Apr 2021 08:09:03: 24000000 INFO @ Sat, 03 Apr 2021 08:09:09: 33000000 INFO @ Sat, 03 Apr 2021 08:09:09: 31000000 INFO @ Sat, 03 Apr 2021 08:09:14: 25000000 INFO @ Sat, 03 Apr 2021 08:09:18: 32000000 INFO @ Sat, 03 Apr 2021 08:09:18: 34000000 INFO @ Sat, 03 Apr 2021 08:09:25: 26000000 INFO @ Sat, 03 Apr 2021 08:09:26: 33000000 INFO @ Sat, 03 Apr 2021 08:09:28: 35000000 INFO @ Sat, 03 Apr 2021 08:09:34: 34000000 INFO @ Sat, 03 Apr 2021 08:09:35: 27000000 INFO @ Sat, 03 Apr 2021 08:09:38: 36000000 INFO @ Sat, 03 Apr 2021 08:09:43: 35000000 INFO @ Sat, 03 Apr 2021 08:09:45: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:09:47: 37000000 INFO @ Sat, 03 Apr 2021 08:09:51: 36000000 INFO @ Sat, 03 Apr 2021 08:09:55: 29000000 INFO @ Sat, 03 Apr 2021 08:09:57: 38000000 INFO @ Sat, 03 Apr 2021 08:10:00: 37000000 INFO @ Sat, 03 Apr 2021 08:10:05: 30000000 INFO @ Sat, 03 Apr 2021 08:10:08: 39000000 INFO @ Sat, 03 Apr 2021 08:10:08: 38000000 INFO @ Sat, 03 Apr 2021 08:10:15: 31000000 INFO @ Sat, 03 Apr 2021 08:10:17: 39000000 INFO @ Sat, 03 Apr 2021 08:10:18: 40000000 INFO @ Sat, 03 Apr 2021 08:10:25: 32000000 INFO @ Sat, 03 Apr 2021 08:10:26: 40000000 INFO @ Sat, 03 Apr 2021 08:10:28: 41000000 INFO @ Sat, 03 Apr 2021 08:10:34: 41000000 INFO @ Sat, 03 Apr 2021 08:10:35: 33000000 INFO @ Sat, 03 Apr 2021 08:10:37: 42000000 INFO @ Sat, 03 Apr 2021 08:10:43: 42000000 INFO @ Sat, 03 Apr 2021 08:10:45: 34000000 INFO @ Sat, 03 Apr 2021 08:10:47: 43000000 INFO @ Sat, 03 Apr 2021 08:10:51: 43000000 INFO @ Sat, 03 Apr 2021 08:10:55: 35000000 INFO @ Sat, 03 Apr 2021 08:10:57: 44000000 INFO @ Sat, 03 Apr 2021 08:11:00: 44000000 INFO @ Sat, 03 Apr 2021 08:11:05: 36000000 INFO @ Sat, 03 Apr 2021 08:11:07: 45000000 INFO @ Sat, 03 Apr 2021 08:11:09: 45000000 INFO @ Sat, 03 Apr 2021 08:11:15: 37000000 INFO @ Sat, 03 Apr 2021 08:11:17: 46000000 INFO @ Sat, 03 Apr 2021 08:11:17: 46000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:11:26: 38000000 INFO @ Sat, 03 Apr 2021 08:11:26: 47000000 INFO @ Sat, 03 Apr 2021 08:11:27: 47000000 INFO @ Sat, 03 Apr 2021 08:11:34: 48000000 INFO @ Sat, 03 Apr 2021 08:11:37: 48000000 INFO @ Sat, 03 Apr 2021 08:11:37: 39000000 INFO @ Sat, 03 Apr 2021 08:11:43: 49000000 INFO @ Sat, 03 Apr 2021 08:11:47: 49000000 INFO @ Sat, 03 Apr 2021 08:11:47: 40000000 INFO @ Sat, 03 Apr 2021 08:11:51: 50000000 INFO @ Sat, 03 Apr 2021 08:11:57: 41000000 INFO @ Sat, 03 Apr 2021 08:11:57: 50000000 INFO @ Sat, 03 Apr 2021 08:12:00: 51000000 INFO @ Sat, 03 Apr 2021 08:12:07: 51000000 INFO @ Sat, 03 Apr 2021 08:12:07: 42000000 INFO @ Sat, 03 Apr 2021 08:12:08: 52000000 INFO @ Sat, 03 Apr 2021 08:12:17: 52000000 INFO @ Sat, 03 Apr 2021 08:12:17: 53000000 INFO @ Sat, 03 Apr 2021 08:12:18: 43000000 INFO @ Sat, 03 Apr 2021 08:12:26: 54000000 INFO @ Sat, 03 Apr 2021 08:12:27: 53000000 INFO @ Sat, 03 Apr 2021 08:12:28: 44000000 INFO @ Sat, 03 Apr 2021 08:12:30: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:12:30: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:12:30: #1 total tags in treatment: 21376542 INFO @ Sat, 03 Apr 2021 08:12:30: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:12:30: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:12:31: #1 tags after filtering in treatment: 13707391 INFO @ Sat, 03 Apr 2021 08:12:31: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 08:12:31: #1 finished! INFO @ Sat, 03 Apr 2021 08:12:31: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:12:31: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:12:32: #2 number of paired peaks: 2400 INFO @ Sat, 03 Apr 2021 08:12:32: start model_add_line... INFO @ Sat, 03 Apr 2021 08:12:33: start X-correlation... INFO @ Sat, 03 Apr 2021 08:12:33: end of X-cor INFO @ Sat, 03 Apr 2021 08:12:33: #2 finished! INFO @ Sat, 03 Apr 2021 08:12:33: #2 predicted fragment length is 121 bps INFO @ Sat, 03 Apr 2021 08:12:33: #2 alternative fragment length(s) may be 121 bps INFO @ Sat, 03 Apr 2021 08:12:33: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.10_model.r WARNING @ Sat, 03 Apr 2021 08:12:33: #2 Since the d (121) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:12:33: #2 You may need to consider one of the other alternative d(s): 121 WARNING @ Sat, 03 Apr 2021 08:12:33: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:12:33: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:12:33: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:12:36: 54000000 INFO @ Sat, 03 Apr 2021 08:12:38: 45000000 INFO @ Sat, 03 Apr 2021 08:12:41: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:12:41: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:12:41: #1 total tags in treatment: 21376542 INFO @ Sat, 03 Apr 2021 08:12:41: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:12:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:12:42: #1 tags after filtering in treatment: 13707391 INFO @ Sat, 03 Apr 2021 08:12:42: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 08:12:42: #1 finished! INFO @ Sat, 03 Apr 2021 08:12:42: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:12:42: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:12:43: #2 number of paired peaks: 2400 INFO @ Sat, 03 Apr 2021 08:12:43: start model_add_line... INFO @ Sat, 03 Apr 2021 08:12:43: start X-correlation... INFO @ Sat, 03 Apr 2021 08:12:43: end of X-cor INFO @ Sat, 03 Apr 2021 08:12:43: #2 finished! INFO @ Sat, 03 Apr 2021 08:12:43: #2 predicted fragment length is 121 bps INFO @ Sat, 03 Apr 2021 08:12:43: #2 alternative fragment length(s) may be 121 bps INFO @ Sat, 03 Apr 2021 08:12:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.05_model.r WARNING @ Sat, 03 Apr 2021 08:12:43: #2 Since the d (121) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:12:43: #2 You may need to consider one of the other alternative d(s): 121 WARNING @ Sat, 03 Apr 2021 08:12:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:12:43: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:12:43: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:12:48: 46000000 INFO @ Sat, 03 Apr 2021 08:12:58: 47000000 INFO @ Sat, 03 Apr 2021 08:13:08: 48000000 INFO @ Sat, 03 Apr 2021 08:13:15: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:13:18: 49000000 INFO @ Sat, 03 Apr 2021 08:13:25: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:13:27: 50000000 INFO @ Sat, 03 Apr 2021 08:13:37: 51000000 INFO @ Sat, 03 Apr 2021 08:13:38: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:13:38: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:13:38: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.10_summits.bed INFO @ Sat, 03 Apr 2021 08:13:38: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (9101 records, 4 fields): 24 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:13:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:13:47: 52000000 INFO @ Sat, 03 Apr 2021 08:13:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:13:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.05_summits.bed INFO @ Sat, 03 Apr 2021 08:13:47: Done! pass1 - making usageList (15 chroms): 5 millis pass2 - checking and writing primary data (13788 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:13:57: 53000000 INFO @ Sat, 03 Apr 2021 08:14:07: 54000000 INFO @ Sat, 03 Apr 2021 08:14:12: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:14:12: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:14:12: #1 total tags in treatment: 21376542 INFO @ Sat, 03 Apr 2021 08:14:12: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:14:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:14:13: #1 tags after filtering in treatment: 13707391 INFO @ Sat, 03 Apr 2021 08:14:13: #1 Redundant rate of treatment: 0.36 INFO @ Sat, 03 Apr 2021 08:14:13: #1 finished! INFO @ Sat, 03 Apr 2021 08:14:13: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:14:13: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:14:14: #2 number of paired peaks: 2400 INFO @ Sat, 03 Apr 2021 08:14:14: start model_add_line... INFO @ Sat, 03 Apr 2021 08:14:15: start X-correlation... INFO @ Sat, 03 Apr 2021 08:14:15: end of X-cor INFO @ Sat, 03 Apr 2021 08:14:15: #2 finished! INFO @ Sat, 03 Apr 2021 08:14:15: #2 predicted fragment length is 121 bps INFO @ Sat, 03 Apr 2021 08:14:15: #2 alternative fragment length(s) may be 121 bps INFO @ Sat, 03 Apr 2021 08:14:15: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.20_model.r WARNING @ Sat, 03 Apr 2021 08:14:15: #2 Since the d (121) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:14:15: #2 You may need to consider one of the other alternative d(s): 121 WARNING @ Sat, 03 Apr 2021 08:14:15: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:14:15: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:14:15: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:14:56: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:15:17: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:15:17: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:15:17: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104587/SRX3104587.20_summits.bed INFO @ Sat, 03 Apr 2021 08:15:17: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (4073 records, 4 fields): 11 millis CompletedMACS2peakCalling