Job ID = 12265168 SRX = SRX3104585 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 34716712 spots for SRR5946190/SRR5946190.sra Written 34716712 spots for SRR5946190/SRR5946190.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265674 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:05:41 34716712 reads; of these: 34716712 (100.00%) were paired; of these: 7720535 (22.24%) aligned concordantly 0 times 23279520 (67.06%) aligned concordantly exactly 1 time 3716657 (10.71%) aligned concordantly >1 times ---- 7720535 pairs aligned concordantly 0 times; of these: 4046341 (52.41%) aligned discordantly 1 time ---- 3674194 pairs aligned 0 times concordantly or discordantly; of these: 7348388 mates make up the pairs; of these: 5487302 (74.67%) aligned 0 times 876258 (11.92%) aligned exactly 1 time 984828 (13.40%) aligned >1 times 92.10% overall alignment rate Time searching: 01:05:41 Overall time: 01:05:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2590312 / 30860361 = 0.0839 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:06:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:06:22: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:06:22: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:06:29: 1000000 INFO @ Sat, 03 Apr 2021 08:06:37: 2000000 INFO @ Sat, 03 Apr 2021 08:06:44: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:06:51: 4000000 INFO @ Sat, 03 Apr 2021 08:06:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:06:52: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:06:52: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:06:59: 5000000 INFO @ Sat, 03 Apr 2021 08:07:00: 1000000 INFO @ Sat, 03 Apr 2021 08:07:06: 6000000 INFO @ Sat, 03 Apr 2021 08:07:08: 2000000 INFO @ Sat, 03 Apr 2021 08:07:13: 7000000 INFO @ Sat, 03 Apr 2021 08:07:16: 3000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 08:07:21: 8000000 INFO @ Sat, 03 Apr 2021 08:07:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 08:07:22: #1 read tag files... INFO @ Sat, 03 Apr 2021 08:07:22: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 08:07:25: 4000000 INFO @ Sat, 03 Apr 2021 08:07:29: 9000000 INFO @ Sat, 03 Apr 2021 08:07:31: 1000000 INFO @ Sat, 03 Apr 2021 08:07:33: 5000000 INFO @ Sat, 03 Apr 2021 08:07:38: 10000000 INFO @ Sat, 03 Apr 2021 08:07:40: 2000000 INFO @ Sat, 03 Apr 2021 08:07:41: 6000000 INFO @ Sat, 03 Apr 2021 08:07:47: 11000000 INFO @ Sat, 03 Apr 2021 08:07:48: 3000000 INFO @ Sat, 03 Apr 2021 08:07:50: 7000000 INFO @ Sat, 03 Apr 2021 08:07:56: 12000000 INFO @ Sat, 03 Apr 2021 08:07:57: 4000000 INFO @ Sat, 03 Apr 2021 08:07:58: 8000000 INFO @ Sat, 03 Apr 2021 08:08:05: 13000000 INFO @ Sat, 03 Apr 2021 08:08:06: 5000000 INFO @ Sat, 03 Apr 2021 08:08:07: 9000000 INFO @ Sat, 03 Apr 2021 08:08:13: 14000000 INFO @ Sat, 03 Apr 2021 08:08:15: 6000000 INFO @ Sat, 03 Apr 2021 08:08:15: 10000000 INFO @ Sat, 03 Apr 2021 08:08:22: 15000000 INFO @ Sat, 03 Apr 2021 08:08:23: 11000000 INFO @ Sat, 03 Apr 2021 08:08:23: 7000000 INFO @ Sat, 03 Apr 2021 08:08:31: 16000000 INFO @ Sat, 03 Apr 2021 08:08:32: 12000000 INFO @ Sat, 03 Apr 2021 08:08:32: 8000000 INFO @ Sat, 03 Apr 2021 08:08:39: 17000000 INFO @ Sat, 03 Apr 2021 08:08:40: 13000000 INFO @ Sat, 03 Apr 2021 08:08:41: 9000000 INFO @ Sat, 03 Apr 2021 08:08:48: 18000000 INFO @ Sat, 03 Apr 2021 08:08:48: 14000000 INFO @ Sat, 03 Apr 2021 08:08:49: 10000000 INFO @ Sat, 03 Apr 2021 08:08:57: 15000000 INFO @ Sat, 03 Apr 2021 08:08:57: 19000000 INFO @ Sat, 03 Apr 2021 08:08:58: 11000000 INFO @ Sat, 03 Apr 2021 08:09:05: 16000000 INFO @ Sat, 03 Apr 2021 08:09:05: 20000000 INFO @ Sat, 03 Apr 2021 08:09:07: 12000000 INFO @ Sat, 03 Apr 2021 08:09:13: 17000000 INFO @ Sat, 03 Apr 2021 08:09:14: 21000000 INFO @ Sat, 03 Apr 2021 08:09:15: 13000000 INFO @ Sat, 03 Apr 2021 08:09:22: 18000000 INFO @ Sat, 03 Apr 2021 08:09:23: 22000000 INFO @ Sat, 03 Apr 2021 08:09:24: 14000000 INFO @ Sat, 03 Apr 2021 08:09:30: 19000000 INFO @ Sat, 03 Apr 2021 08:09:31: 23000000 INFO @ Sat, 03 Apr 2021 08:09:32: 15000000 INFO @ Sat, 03 Apr 2021 08:09:38: 20000000 INFO @ Sat, 03 Apr 2021 08:09:40: 24000000 INFO @ Sat, 03 Apr 2021 08:09:41: 16000000 INFO @ Sat, 03 Apr 2021 08:09:47: 21000000 INFO @ Sat, 03 Apr 2021 08:09:49: 25000000 INFO @ Sat, 03 Apr 2021 08:09:49: 17000000 INFO @ Sat, 03 Apr 2021 08:09:55: 22000000 INFO @ Sat, 03 Apr 2021 08:09:57: 26000000 INFO @ Sat, 03 Apr 2021 08:09:58: 18000000 INFO @ Sat, 03 Apr 2021 08:10:03: 23000000 INFO @ Sat, 03 Apr 2021 08:10:06: 27000000 INFO @ Sat, 03 Apr 2021 08:10:06: 19000000 INFO @ Sat, 03 Apr 2021 08:10:12: 24000000 INFO @ Sat, 03 Apr 2021 08:10:14: 28000000 INFO @ Sat, 03 Apr 2021 08:10:15: 20000000 INFO @ Sat, 03 Apr 2021 08:10:20: 25000000 INFO @ Sat, 03 Apr 2021 08:10:23: 29000000 INFO @ Sat, 03 Apr 2021 08:10:23: 21000000 INFO @ Sat, 03 Apr 2021 08:10:28: 26000000 INFO @ Sat, 03 Apr 2021 08:10:31: 30000000 INFO @ Sat, 03 Apr 2021 08:10:32: 22000000 INFO @ Sat, 03 Apr 2021 08:10:37: 27000000 INFO @ Sat, 03 Apr 2021 08:10:40: 31000000 INFO @ Sat, 03 Apr 2021 08:10:40: 23000000 INFO @ Sat, 03 Apr 2021 08:10:45: 28000000 INFO @ Sat, 03 Apr 2021 08:10:48: 32000000 INFO @ Sat, 03 Apr 2021 08:10:49: 24000000 INFO @ Sat, 03 Apr 2021 08:10:53: 29000000 INFO @ Sat, 03 Apr 2021 08:10:57: 33000000 INFO @ Sat, 03 Apr 2021 08:10:58: 25000000 INFO @ Sat, 03 Apr 2021 08:11:01: 30000000 INFO @ Sat, 03 Apr 2021 08:11:06: 34000000 INFO @ Sat, 03 Apr 2021 08:11:06: 26000000 INFO @ Sat, 03 Apr 2021 08:11:10: 31000000 INFO @ Sat, 03 Apr 2021 08:11:14: 35000000 INFO @ Sat, 03 Apr 2021 08:11:15: 27000000 INFO @ Sat, 03 Apr 2021 08:11:18: 32000000 INFO @ Sat, 03 Apr 2021 08:11:23: 36000000 INFO @ Sat, 03 Apr 2021 08:11:23: 28000000 INFO @ Sat, 03 Apr 2021 08:11:26: 33000000 INFO @ Sat, 03 Apr 2021 08:11:31: 37000000 INFO @ Sat, 03 Apr 2021 08:11:32: 29000000 INFO @ Sat, 03 Apr 2021 08:11:35: 34000000 INFO @ Sat, 03 Apr 2021 08:11:40: 38000000 INFO @ Sat, 03 Apr 2021 08:11:40: 30000000 INFO @ Sat, 03 Apr 2021 08:11:43: 35000000 INFO @ Sat, 03 Apr 2021 08:11:48: 39000000 INFO @ Sat, 03 Apr 2021 08:11:49: 31000000 INFO @ Sat, 03 Apr 2021 08:11:51: 36000000 INFO @ Sat, 03 Apr 2021 08:11:57: 40000000 INFO @ Sat, 03 Apr 2021 08:11:57: 32000000 INFO @ Sat, 03 Apr 2021 08:12:00: 37000000 INFO @ Sat, 03 Apr 2021 08:12:05: 33000000 INFO @ Sat, 03 Apr 2021 08:12:05: 41000000 INFO @ Sat, 03 Apr 2021 08:12:08: 38000000 INFO @ Sat, 03 Apr 2021 08:12:14: 34000000 INFO @ Sat, 03 Apr 2021 08:12:14: 42000000 INFO @ Sat, 03 Apr 2021 08:12:16: 39000000 INFO @ Sat, 03 Apr 2021 08:12:22: 35000000 INFO @ Sat, 03 Apr 2021 08:12:23: 43000000 INFO @ Sat, 03 Apr 2021 08:12:25: 40000000 INFO @ Sat, 03 Apr 2021 08:12:31: 36000000 INFO @ Sat, 03 Apr 2021 08:12:31: 44000000 INFO @ Sat, 03 Apr 2021 08:12:33: 41000000 INFO @ Sat, 03 Apr 2021 08:12:39: 37000000 INFO @ Sat, 03 Apr 2021 08:12:40: 45000000 INFO @ Sat, 03 Apr 2021 08:12:41: 42000000 INFO @ Sat, 03 Apr 2021 08:12:48: 38000000 INFO @ Sat, 03 Apr 2021 08:12:48: 46000000 INFO @ Sat, 03 Apr 2021 08:12:50: 43000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 08:12:56: 39000000 INFO @ Sat, 03 Apr 2021 08:12:57: 47000000 INFO @ Sat, 03 Apr 2021 08:12:58: 44000000 INFO @ Sat, 03 Apr 2021 08:13:04: 40000000 INFO @ Sat, 03 Apr 2021 08:13:05: 48000000 INFO @ Sat, 03 Apr 2021 08:13:06: 45000000 INFO @ Sat, 03 Apr 2021 08:13:13: 41000000 INFO @ Sat, 03 Apr 2021 08:13:14: 46000000 INFO @ Sat, 03 Apr 2021 08:13:14: 49000000 INFO @ Sat, 03 Apr 2021 08:13:21: 42000000 INFO @ Sat, 03 Apr 2021 08:13:22: 47000000 INFO @ Sat, 03 Apr 2021 08:13:23: 50000000 INFO @ Sat, 03 Apr 2021 08:13:29: 43000000 INFO @ Sat, 03 Apr 2021 08:13:31: 48000000 INFO @ Sat, 03 Apr 2021 08:13:31: 51000000 INFO @ Sat, 03 Apr 2021 08:13:38: 44000000 INFO @ Sat, 03 Apr 2021 08:13:39: 49000000 INFO @ Sat, 03 Apr 2021 08:13:40: 52000000 INFO @ Sat, 03 Apr 2021 08:13:46: 45000000 INFO @ Sat, 03 Apr 2021 08:13:48: 50000000 INFO @ Sat, 03 Apr 2021 08:13:49: 53000000 INFO @ Sat, 03 Apr 2021 08:13:55: 46000000 INFO @ Sat, 03 Apr 2021 08:13:56: 51000000 INFO @ Sat, 03 Apr 2021 08:13:57: 54000000 INFO @ Sat, 03 Apr 2021 08:14:03: 47000000 INFO @ Sat, 03 Apr 2021 08:14:05: 52000000 INFO @ Sat, 03 Apr 2021 08:14:06: 55000000 INFO @ Sat, 03 Apr 2021 08:14:12: 48000000 INFO @ Sat, 03 Apr 2021 08:14:13: 53000000 INFO @ Sat, 03 Apr 2021 08:14:15: 56000000 INFO @ Sat, 03 Apr 2021 08:14:21: 49000000 INFO @ Sat, 03 Apr 2021 08:14:22: 54000000 INFO @ Sat, 03 Apr 2021 08:14:23: 57000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 08:14:30: 50000000 INFO @ Sat, 03 Apr 2021 08:14:30: 55000000 INFO @ Sat, 03 Apr 2021 08:14:32: 58000000 INFO @ Sat, 03 Apr 2021 08:14:38: 51000000 INFO @ Sat, 03 Apr 2021 08:14:38: 56000000 INFO @ Sat, 03 Apr 2021 08:14:39: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:14:39: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:14:39: #1 total tags in treatment: 24651923 INFO @ Sat, 03 Apr 2021 08:14:39: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:14:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:14:40: #1 tags after filtering in treatment: 16724866 INFO @ Sat, 03 Apr 2021 08:14:40: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 08:14:40: #1 finished! INFO @ Sat, 03 Apr 2021 08:14:40: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:14:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:14:41: #2 number of paired peaks: 754 WARNING @ Sat, 03 Apr 2021 08:14:41: Fewer paired peaks (754) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 754 pairs to build model! INFO @ Sat, 03 Apr 2021 08:14:41: start model_add_line... INFO @ Sat, 03 Apr 2021 08:14:42: start X-correlation... INFO @ Sat, 03 Apr 2021 08:14:42: end of X-cor INFO @ Sat, 03 Apr 2021 08:14:42: #2 finished! INFO @ Sat, 03 Apr 2021 08:14:42: #2 predicted fragment length is 111 bps INFO @ Sat, 03 Apr 2021 08:14:42: #2 alternative fragment length(s) may be 111 bps INFO @ Sat, 03 Apr 2021 08:14:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.05_model.r WARNING @ Sat, 03 Apr 2021 08:14:42: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:14:42: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Sat, 03 Apr 2021 08:14:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:14:42: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:14:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:14:46: 52000000 INFO @ Sat, 03 Apr 2021 08:14:47: 57000000 INFO @ Sat, 03 Apr 2021 08:14:53: 53000000 INFO @ Sat, 03 Apr 2021 08:14:55: 58000000 INFO @ Sat, 03 Apr 2021 08:15:01: 54000000 INFO @ Sat, 03 Apr 2021 08:15:01: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:15:01: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:15:01: #1 total tags in treatment: 24651923 INFO @ Sat, 03 Apr 2021 08:15:01: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:15:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:15:02: #1 tags after filtering in treatment: 16724866 INFO @ Sat, 03 Apr 2021 08:15:02: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 08:15:02: #1 finished! INFO @ Sat, 03 Apr 2021 08:15:02: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:15:02: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:15:04: #2 number of paired peaks: 754 WARNING @ Sat, 03 Apr 2021 08:15:04: Fewer paired peaks (754) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 754 pairs to build model! INFO @ Sat, 03 Apr 2021 08:15:04: start model_add_line... INFO @ Sat, 03 Apr 2021 08:15:04: start X-correlation... INFO @ Sat, 03 Apr 2021 08:15:04: end of X-cor INFO @ Sat, 03 Apr 2021 08:15:04: #2 finished! INFO @ Sat, 03 Apr 2021 08:15:04: #2 predicted fragment length is 111 bps INFO @ Sat, 03 Apr 2021 08:15:04: #2 alternative fragment length(s) may be 111 bps INFO @ Sat, 03 Apr 2021 08:15:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.10_model.r WARNING @ Sat, 03 Apr 2021 08:15:04: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:15:04: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Sat, 03 Apr 2021 08:15:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:15:04: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:15:04: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:15:08: 55000000 INFO @ Sat, 03 Apr 2021 08:15:15: 56000000 INFO @ Sat, 03 Apr 2021 08:15:23: 57000000 INFO @ Sat, 03 Apr 2021 08:15:28: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:15:30: 58000000 INFO @ Sat, 03 Apr 2021 08:15:36: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 08:15:36: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 08:15:36: #1 total tags in treatment: 24651923 INFO @ Sat, 03 Apr 2021 08:15:36: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 08:15:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 08:15:37: #1 tags after filtering in treatment: 16724866 INFO @ Sat, 03 Apr 2021 08:15:37: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 03 Apr 2021 08:15:37: #1 finished! INFO @ Sat, 03 Apr 2021 08:15:37: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 08:15:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 08:15:38: #2 number of paired peaks: 754 WARNING @ Sat, 03 Apr 2021 08:15:38: Fewer paired peaks (754) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 754 pairs to build model! INFO @ Sat, 03 Apr 2021 08:15:38: start model_add_line... INFO @ Sat, 03 Apr 2021 08:15:38: start X-correlation... INFO @ Sat, 03 Apr 2021 08:15:38: end of X-cor INFO @ Sat, 03 Apr 2021 08:15:38: #2 finished! INFO @ Sat, 03 Apr 2021 08:15:38: #2 predicted fragment length is 111 bps INFO @ Sat, 03 Apr 2021 08:15:38: #2 alternative fragment length(s) may be 111 bps INFO @ Sat, 03 Apr 2021 08:15:38: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.20_model.r WARNING @ Sat, 03 Apr 2021 08:15:38: #2 Since the d (111) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 08:15:38: #2 You may need to consider one of the other alternative d(s): 111 WARNING @ Sat, 03 Apr 2021 08:15:38: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 08:15:38: #3 Call peaks... INFO @ Sat, 03 Apr 2021 08:15:38: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 08:15:48: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:15:54: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.05_peaks.xls INFO @ Sat, 03 Apr 2021 08:15:54: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:15:54: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.05_summits.bed INFO @ Sat, 03 Apr 2021 08:15:54: Done! pass1 - making usageList (15 chroms): 6 millis pass2 - checking and writing primary data (14120 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:16:13: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.10_peaks.xls INFO @ Sat, 03 Apr 2021 08:16:13: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:16:13: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.10_summits.bed INFO @ Sat, 03 Apr 2021 08:16:13: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (8815 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 08:16:23: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 08:16:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.20_peaks.xls INFO @ Sat, 03 Apr 2021 08:16:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 08:16:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104585/SRX3104585.20_summits.bed INFO @ Sat, 03 Apr 2021 08:16:47: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (3467 records, 4 fields): 10 millis CompletedMACS2peakCalling