Job ID = 12265165 SRX = SRX3104582 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 39498659 spots for SRR5946187/SRR5946187.sra Written 39498659 spots for SRR5946187/SRR5946187.sra fastq に変換しました。 bowtie でマッピング中... Your job 12265583 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:39:41 39498659 reads; of these: 39498659 (100.00%) were paired; of these: 15048214 (38.10%) aligned concordantly 0 times 21785281 (55.15%) aligned concordantly exactly 1 time 2665164 (6.75%) aligned concordantly >1 times ---- 15048214 pairs aligned concordantly 0 times; of these: 3724626 (24.75%) aligned discordantly 1 time ---- 11323588 pairs aligned 0 times concordantly or discordantly; of these: 22647176 mates make up the pairs; of these: 21050735 (92.95%) aligned 0 times 805234 (3.56%) aligned exactly 1 time 791207 (3.49%) aligned >1 times 73.35% overall alignment rate Time searching: 00:39:41 Overall time: 00:39:41 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 24 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3596514 / 27968970 = 0.1286 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:33:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:33:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:33:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:33:42: 1000000 INFO @ Sat, 03 Apr 2021 07:33:47: 2000000 INFO @ Sat, 03 Apr 2021 07:33:52: 3000000 INFO @ Sat, 03 Apr 2021 07:33:58: 4000000 INFO @ Sat, 03 Apr 2021 07:34:03: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:34:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:34:06: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:34:06: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:34:09: 6000000 INFO @ Sat, 03 Apr 2021 07:34:12: 1000000 INFO @ Sat, 03 Apr 2021 07:34:15: 7000000 INFO @ Sat, 03 Apr 2021 07:34:18: 2000000 INFO @ Sat, 03 Apr 2021 07:34:21: 8000000 INFO @ Sat, 03 Apr 2021 07:34:24: 3000000 INFO @ Sat, 03 Apr 2021 07:34:27: 9000000 INFO @ Sat, 03 Apr 2021 07:34:30: 4000000 INFO @ Sat, 03 Apr 2021 07:34:33: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.7.1/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 03 Apr 2021 07:34:36: 5000000 INFO @ Sat, 03 Apr 2021 07:34:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 03 Apr 2021 07:34:36: #1 read tag files... INFO @ Sat, 03 Apr 2021 07:34:36: #1 read treatment tags... INFO @ Sat, 03 Apr 2021 07:34:40: 11000000 INFO @ Sat, 03 Apr 2021 07:34:42: 6000000 INFO @ Sat, 03 Apr 2021 07:34:42: 1000000 INFO @ Sat, 03 Apr 2021 07:34:46: 12000000 INFO @ Sat, 03 Apr 2021 07:34:48: 7000000 INFO @ Sat, 03 Apr 2021 07:34:49: 2000000 INFO @ Sat, 03 Apr 2021 07:34:53: 13000000 INFO @ Sat, 03 Apr 2021 07:34:54: 8000000 INFO @ Sat, 03 Apr 2021 07:34:55: 3000000 INFO @ Sat, 03 Apr 2021 07:34:59: 14000000 INFO @ Sat, 03 Apr 2021 07:35:00: 9000000 INFO @ Sat, 03 Apr 2021 07:35:01: 4000000 INFO @ Sat, 03 Apr 2021 07:35:05: 15000000 INFO @ Sat, 03 Apr 2021 07:35:06: 10000000 INFO @ Sat, 03 Apr 2021 07:35:07: 5000000 INFO @ Sat, 03 Apr 2021 07:35:12: 16000000 INFO @ Sat, 03 Apr 2021 07:35:12: 11000000 INFO @ Sat, 03 Apr 2021 07:35:13: 6000000 INFO @ Sat, 03 Apr 2021 07:35:18: 17000000 INFO @ Sat, 03 Apr 2021 07:35:18: 12000000 INFO @ Sat, 03 Apr 2021 07:35:19: 7000000 INFO @ Sat, 03 Apr 2021 07:35:24: 13000000 INFO @ Sat, 03 Apr 2021 07:35:25: 18000000 INFO @ Sat, 03 Apr 2021 07:35:25: 8000000 INFO @ Sat, 03 Apr 2021 07:35:30: 14000000 INFO @ Sat, 03 Apr 2021 07:35:31: 19000000 INFO @ Sat, 03 Apr 2021 07:35:31: 9000000 INFO @ Sat, 03 Apr 2021 07:35:36: 15000000 INFO @ Sat, 03 Apr 2021 07:35:37: 20000000 INFO @ Sat, 03 Apr 2021 07:35:37: 10000000 INFO @ Sat, 03 Apr 2021 07:35:42: 16000000 INFO @ Sat, 03 Apr 2021 07:35:43: 21000000 INFO @ Sat, 03 Apr 2021 07:35:44: 11000000 INFO @ Sat, 03 Apr 2021 07:35:48: 17000000 INFO @ Sat, 03 Apr 2021 07:35:49: 22000000 INFO @ Sat, 03 Apr 2021 07:35:50: 12000000 INFO @ Sat, 03 Apr 2021 07:35:54: 18000000 INFO @ Sat, 03 Apr 2021 07:35:55: 23000000 INFO @ Sat, 03 Apr 2021 07:35:56: 13000000 INFO @ Sat, 03 Apr 2021 07:36:00: 19000000 INFO @ Sat, 03 Apr 2021 07:36:01: 24000000 INFO @ Sat, 03 Apr 2021 07:36:02: 14000000 INFO @ Sat, 03 Apr 2021 07:36:06: 20000000 INFO @ Sat, 03 Apr 2021 07:36:07: 25000000 INFO @ Sat, 03 Apr 2021 07:36:08: 15000000 INFO @ Sat, 03 Apr 2021 07:36:12: 21000000 INFO @ Sat, 03 Apr 2021 07:36:13: 26000000 INFO @ Sat, 03 Apr 2021 07:36:14: 16000000 INFO @ Sat, 03 Apr 2021 07:36:18: 22000000 INFO @ Sat, 03 Apr 2021 07:36:19: 27000000 INFO @ Sat, 03 Apr 2021 07:36:20: 17000000 INFO @ Sat, 03 Apr 2021 07:36:24: 23000000 INFO @ Sat, 03 Apr 2021 07:36:25: 28000000 INFO @ Sat, 03 Apr 2021 07:36:26: 18000000 INFO @ Sat, 03 Apr 2021 07:36:29: 24000000 INFO @ Sat, 03 Apr 2021 07:36:31: 29000000 INFO @ Sat, 03 Apr 2021 07:36:32: 19000000 INFO @ Sat, 03 Apr 2021 07:36:35: 25000000 INFO @ Sat, 03 Apr 2021 07:36:37: 30000000 INFO @ Sat, 03 Apr 2021 07:36:38: 20000000 INFO @ Sat, 03 Apr 2021 07:36:41: 26000000 INFO @ Sat, 03 Apr 2021 07:36:43: 31000000 INFO @ Sat, 03 Apr 2021 07:36:43: 21000000 INFO @ Sat, 03 Apr 2021 07:36:47: 27000000 INFO @ Sat, 03 Apr 2021 07:36:49: 32000000 INFO @ Sat, 03 Apr 2021 07:36:49: 22000000 INFO @ Sat, 03 Apr 2021 07:36:53: 28000000 INFO @ Sat, 03 Apr 2021 07:36:55: 33000000 INFO @ Sat, 03 Apr 2021 07:36:55: 23000000 INFO @ Sat, 03 Apr 2021 07:36:59: 29000000 INFO @ Sat, 03 Apr 2021 07:37:01: 34000000 INFO @ Sat, 03 Apr 2021 07:37:01: 24000000 INFO @ Sat, 03 Apr 2021 07:37:05: 30000000 INFO @ Sat, 03 Apr 2021 07:37:07: 25000000 INFO @ Sat, 03 Apr 2021 07:37:07: 35000000 INFO @ Sat, 03 Apr 2021 07:37:10: 31000000 INFO @ Sat, 03 Apr 2021 07:37:13: 36000000 INFO @ Sat, 03 Apr 2021 07:37:13: 26000000 INFO @ Sat, 03 Apr 2021 07:37:16: 32000000 INFO @ Sat, 03 Apr 2021 07:37:19: 37000000 INFO @ Sat, 03 Apr 2021 07:37:19: 27000000 INFO @ Sat, 03 Apr 2021 07:37:22: 33000000 INFO @ Sat, 03 Apr 2021 07:37:25: 38000000 INFO @ Sat, 03 Apr 2021 07:37:25: 28000000 INFO @ Sat, 03 Apr 2021 07:37:28: 34000000 INFO @ Sat, 03 Apr 2021 07:37:31: 39000000 INFO @ Sat, 03 Apr 2021 07:37:31: 29000000 INFO @ Sat, 03 Apr 2021 07:37:34: 35000000 INFO @ Sat, 03 Apr 2021 07:37:37: 40000000 INFO @ Sat, 03 Apr 2021 07:37:37: 30000000 INFO @ Sat, 03 Apr 2021 07:37:39: 36000000 INFO @ Sat, 03 Apr 2021 07:37:42: 41000000 INFO @ Sat, 03 Apr 2021 07:37:43: 31000000 INFO @ Sat, 03 Apr 2021 07:37:45: 37000000 INFO @ Sat, 03 Apr 2021 07:37:48: 42000000 INFO @ Sat, 03 Apr 2021 07:37:48: 32000000 INFO @ Sat, 03 Apr 2021 07:37:51: 38000000 INFO @ Sat, 03 Apr 2021 07:37:54: 33000000 INFO @ Sat, 03 Apr 2021 07:37:54: 43000000 INFO @ Sat, 03 Apr 2021 07:37:57: 39000000 INFO @ Sat, 03 Apr 2021 07:38:00: 34000000 INFO @ Sat, 03 Apr 2021 07:38:00: 44000000 INFO @ Sat, 03 Apr 2021 07:38:03: 40000000 INFO @ Sat, 03 Apr 2021 07:38:06: 35000000 INFO @ Sat, 03 Apr 2021 07:38:06: 45000000 INFO @ Sat, 03 Apr 2021 07:38:09: 41000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 03 Apr 2021 07:38:12: 36000000 INFO @ Sat, 03 Apr 2021 07:38:12: 46000000 INFO @ Sat, 03 Apr 2021 07:38:14: 42000000 INFO @ Sat, 03 Apr 2021 07:38:18: 37000000 INFO @ Sat, 03 Apr 2021 07:38:18: 47000000 INFO @ Sat, 03 Apr 2021 07:38:20: 43000000 INFO @ Sat, 03 Apr 2021 07:38:23: 48000000 INFO @ Sat, 03 Apr 2021 07:38:24: 38000000 INFO @ Sat, 03 Apr 2021 07:38:26: 44000000 INFO @ Sat, 03 Apr 2021 07:38:29: 49000000 INFO @ Sat, 03 Apr 2021 07:38:29: 39000000 INFO @ Sat, 03 Apr 2021 07:38:32: 45000000 INFO @ Sat, 03 Apr 2021 07:38:35: 50000000 INFO @ Sat, 03 Apr 2021 07:38:35: 40000000 INFO @ Sat, 03 Apr 2021 07:38:38: 46000000 INFO @ Sat, 03 Apr 2021 07:38:40: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:38:40: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:38:40: #1 total tags in treatment: 21304136 INFO @ Sat, 03 Apr 2021 07:38:40: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:38:40: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:38:40: #1 tags after filtering in treatment: 12137527 INFO @ Sat, 03 Apr 2021 07:38:40: #1 Redundant rate of treatment: 0.43 INFO @ Sat, 03 Apr 2021 07:38:40: #1 finished! INFO @ Sat, 03 Apr 2021 07:38:40: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:38:40: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:38:41: 41000000 INFO @ Sat, 03 Apr 2021 07:38:42: #2 number of paired peaks: 4434 INFO @ Sat, 03 Apr 2021 07:38:42: start model_add_line... INFO @ Sat, 03 Apr 2021 07:38:42: start X-correlation... INFO @ Sat, 03 Apr 2021 07:38:42: end of X-cor INFO @ Sat, 03 Apr 2021 07:38:42: #2 finished! INFO @ Sat, 03 Apr 2021 07:38:42: #2 predicted fragment length is 122 bps INFO @ Sat, 03 Apr 2021 07:38:42: #2 alternative fragment length(s) may be 122 bps INFO @ Sat, 03 Apr 2021 07:38:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.05_model.r WARNING @ Sat, 03 Apr 2021 07:38:42: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:38:42: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Sat, 03 Apr 2021 07:38:42: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:38:42: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:38:42: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:38:43: 47000000 INFO @ Sat, 03 Apr 2021 07:38:47: 42000000 INFO @ Sat, 03 Apr 2021 07:38:49: 48000000 INFO @ Sat, 03 Apr 2021 07:38:53: 43000000 INFO @ Sat, 03 Apr 2021 07:38:55: 49000000 INFO @ Sat, 03 Apr 2021 07:38:59: 44000000 INFO @ Sat, 03 Apr 2021 07:39:01: 50000000 BigWig に変換しました。 INFO @ Sat, 03 Apr 2021 07:39:04: 45000000 INFO @ Sat, 03 Apr 2021 07:39:05: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:39:05: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:39:05: #1 total tags in treatment: 21304136 INFO @ Sat, 03 Apr 2021 07:39:05: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:39:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:39:06: #1 tags after filtering in treatment: 12137527 INFO @ Sat, 03 Apr 2021 07:39:06: #1 Redundant rate of treatment: 0.43 INFO @ Sat, 03 Apr 2021 07:39:06: #1 finished! INFO @ Sat, 03 Apr 2021 07:39:06: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:39:06: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:39:07: #2 number of paired peaks: 4434 INFO @ Sat, 03 Apr 2021 07:39:07: start model_add_line... INFO @ Sat, 03 Apr 2021 07:39:07: start X-correlation... INFO @ Sat, 03 Apr 2021 07:39:07: end of X-cor INFO @ Sat, 03 Apr 2021 07:39:07: #2 finished! INFO @ Sat, 03 Apr 2021 07:39:07: #2 predicted fragment length is 122 bps INFO @ Sat, 03 Apr 2021 07:39:07: #2 alternative fragment length(s) may be 122 bps INFO @ Sat, 03 Apr 2021 07:39:07: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.10_model.r WARNING @ Sat, 03 Apr 2021 07:39:07: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:39:07: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Sat, 03 Apr 2021 07:39:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:39:07: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:39:07: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:39:10: 46000000 INFO @ Sat, 03 Apr 2021 07:39:11: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:39:15: 47000000 INFO @ Sat, 03 Apr 2021 07:39:21: 48000000 INFO @ Sat, 03 Apr 2021 07:39:27: 49000000 INFO @ Sat, 03 Apr 2021 07:39:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.05_peaks.xls INFO @ Sat, 03 Apr 2021 07:39:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.05_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:39:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.05_summits.bed INFO @ Sat, 03 Apr 2021 07:39:27: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (17247 records, 4 fields): 28 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:39:32: 50000000 INFO @ Sat, 03 Apr 2021 07:39:37: #1 tag size is determined as 76 bps INFO @ Sat, 03 Apr 2021 07:39:37: #1 tag size = 76 INFO @ Sat, 03 Apr 2021 07:39:37: #1 total tags in treatment: 21304136 INFO @ Sat, 03 Apr 2021 07:39:37: #1 user defined the maximum tags... INFO @ Sat, 03 Apr 2021 07:39:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 03 Apr 2021 07:39:37: #1 tags after filtering in treatment: 12137527 INFO @ Sat, 03 Apr 2021 07:39:37: #1 Redundant rate of treatment: 0.43 INFO @ Sat, 03 Apr 2021 07:39:37: #1 finished! INFO @ Sat, 03 Apr 2021 07:39:37: #2 Build Peak Model... INFO @ Sat, 03 Apr 2021 07:39:37: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 03 Apr 2021 07:39:37: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:39:38: #2 number of paired peaks: 4434 INFO @ Sat, 03 Apr 2021 07:39:38: start model_add_line... INFO @ Sat, 03 Apr 2021 07:39:39: start X-correlation... INFO @ Sat, 03 Apr 2021 07:39:39: end of X-cor INFO @ Sat, 03 Apr 2021 07:39:39: #2 finished! INFO @ Sat, 03 Apr 2021 07:39:39: #2 predicted fragment length is 122 bps INFO @ Sat, 03 Apr 2021 07:39:39: #2 alternative fragment length(s) may be 122 bps INFO @ Sat, 03 Apr 2021 07:39:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.20_model.r WARNING @ Sat, 03 Apr 2021 07:39:39: #2 Since the d (122) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 03 Apr 2021 07:39:39: #2 You may need to consider one of the other alternative d(s): 122 WARNING @ Sat, 03 Apr 2021 07:39:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 03 Apr 2021 07:39:39: #3 Call peaks... INFO @ Sat, 03 Apr 2021 07:39:39: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 03 Apr 2021 07:39:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.10_peaks.xls INFO @ Sat, 03 Apr 2021 07:39:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.10_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:39:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.10_summits.bed INFO @ Sat, 03 Apr 2021 07:39:53: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (12504 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 03 Apr 2021 07:40:08: #3 Call peaks for each chromosome... INFO @ Sat, 03 Apr 2021 07:40:23: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.20_peaks.xls INFO @ Sat, 03 Apr 2021 07:40:23: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.20_peaks.narrowPeak INFO @ Sat, 03 Apr 2021 07:40:23: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX3104582/SRX3104582.20_summits.bed INFO @ Sat, 03 Apr 2021 07:40:23: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (6792 records, 4 fields): 8 millis CompletedMACS2peakCalling