Job ID = 10924622 sra ファイルのダウンロード中... Completed: 3385605K bytes transferred in 97 seconds (285431K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 81452587 spots for /home/okishinya/chipatlas/results/dm3/SRX2998859/SRR5820981.sra Written 81452587 spots for /home/okishinya/chipatlas/results/dm3/SRX2998859/SRR5820981.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:33:52 81452587 reads; of these: 81452587 (100.00%) were unpaired; of these: 1884959 (2.31%) aligned 0 times 54391801 (66.78%) aligned exactly 1 time 25175827 (30.91%) aligned >1 times 97.69% overall alignment rate Time searching: 00:33:53 Overall time: 00:33:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdupse_core] 22040344 / 79567628 = 0.2770 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 06 Aug 2018 11:23:42: # Command line: callpeak -t SRX2998859.bam -f BAM -g dm -n SRX2998859.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2998859.05 # format = BAM # ChIP-seq file = ['SRX2998859.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Aug 2018 11:23:42: # Command line: callpeak -t SRX2998859.bam -f BAM -g dm -n SRX2998859.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2998859.20 # format = BAM # ChIP-seq file = ['SRX2998859.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Aug 2018 11:23:42: # Command line: callpeak -t SRX2998859.bam -f BAM -g dm -n SRX2998859.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2998859.10 # format = BAM # ChIP-seq file = ['SRX2998859.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Aug 2018 11:23:42: #1 read tag files... INFO @ Mon, 06 Aug 2018 11:23:42: #1 read tag files... INFO @ Mon, 06 Aug 2018 11:23:42: #1 read tag files... INFO @ Mon, 06 Aug 2018 11:23:42: #1 read treatment tags... INFO @ Mon, 06 Aug 2018 11:23:42: #1 read treatment tags... INFO @ Mon, 06 Aug 2018 11:23:42: #1 read treatment tags... INFO @ Mon, 06 Aug 2018 11:23:49: 1000000 INFO @ Mon, 06 Aug 2018 11:23:49: 1000000 INFO @ Mon, 06 Aug 2018 11:23:49: 1000000 INFO @ Mon, 06 Aug 2018 11:23:56: 2000000 INFO @ Mon, 06 Aug 2018 11:23:56: 2000000 INFO @ Mon, 06 Aug 2018 11:23:56: 2000000 INFO @ Mon, 06 Aug 2018 11:24:02: 3000000 INFO @ Mon, 06 Aug 2018 11:24:03: 3000000 INFO @ Mon, 06 Aug 2018 11:24:03: 3000000 INFO @ Mon, 06 Aug 2018 11:24:09: 4000000 INFO @ Mon, 06 Aug 2018 11:24:09: 4000000 INFO @ Mon, 06 Aug 2018 11:24:09: 4000000 INFO @ Mon, 06 Aug 2018 11:24:15: 5000000 INFO @ Mon, 06 Aug 2018 11:24:16: 5000000 INFO @ Mon, 06 Aug 2018 11:24:16: 5000000 INFO @ Mon, 06 Aug 2018 11:24:22: 6000000 INFO @ Mon, 06 Aug 2018 11:24:23: 6000000 INFO @ Mon, 06 Aug 2018 11:24:23: 6000000 INFO @ Mon, 06 Aug 2018 11:24:29: 7000000 INFO @ Mon, 06 Aug 2018 11:24:29: 7000000 INFO @ Mon, 06 Aug 2018 11:24:30: 7000000 INFO @ Mon, 06 Aug 2018 11:24:35: 8000000 INFO @ Mon, 06 Aug 2018 11:24:36: 8000000 INFO @ Mon, 06 Aug 2018 11:24:37: 8000000 INFO @ Mon, 06 Aug 2018 11:24:42: 9000000 INFO @ Mon, 06 Aug 2018 11:24:43: 9000000 INFO @ Mon, 06 Aug 2018 11:24:43: 9000000 INFO @ Mon, 06 Aug 2018 11:24:49: 10000000 INFO @ Mon, 06 Aug 2018 11:24:49: 10000000 INFO @ Mon, 06 Aug 2018 11:24:50: 10000000 INFO @ Mon, 06 Aug 2018 11:24:55: 11000000 INFO @ Mon, 06 Aug 2018 11:24:56: 11000000 INFO @ Mon, 06 Aug 2018 11:24:57: 11000000 INFO @ Mon, 06 Aug 2018 11:25:02: 12000000 INFO @ Mon, 06 Aug 2018 11:25:03: 12000000 INFO @ Mon, 06 Aug 2018 11:25:04: 12000000 INFO @ Mon, 06 Aug 2018 11:25:09: 13000000 INFO @ Mon, 06 Aug 2018 11:25:09: 13000000 INFO @ Mon, 06 Aug 2018 11:25:11: 13000000 INFO @ Mon, 06 Aug 2018 11:25:15: 14000000 INFO @ Mon, 06 Aug 2018 11:25:16: 14000000 INFO @ Mon, 06 Aug 2018 11:25:17: 14000000 INFO @ Mon, 06 Aug 2018 11:25:22: 15000000 INFO @ Mon, 06 Aug 2018 11:25:23: 15000000 INFO @ Mon, 06 Aug 2018 11:25:24: 15000000 INFO @ Mon, 06 Aug 2018 11:25:29: 16000000 INFO @ Mon, 06 Aug 2018 11:25:29: 16000000 INFO @ Mon, 06 Aug 2018 11:25:31: 16000000 INFO @ Mon, 06 Aug 2018 11:25:35: 17000000 INFO @ Mon, 06 Aug 2018 11:25:36: 17000000 INFO @ Mon, 06 Aug 2018 11:25:37: 17000000 INFO @ Mon, 06 Aug 2018 11:25:42: 18000000 INFO @ Mon, 06 Aug 2018 11:25:42: 18000000 INFO @ Mon, 06 Aug 2018 11:25:44: 18000000 INFO @ Mon, 06 Aug 2018 11:25:48: 19000000 INFO @ Mon, 06 Aug 2018 11:25:49: 19000000 INFO @ Mon, 06 Aug 2018 11:25:51: 19000000 INFO @ Mon, 06 Aug 2018 11:25:55: 20000000 INFO @ Mon, 06 Aug 2018 11:25:55: 20000000 INFO @ Mon, 06 Aug 2018 11:25:58: 20000000 INFO @ Mon, 06 Aug 2018 11:26:02: 21000000 INFO @ Mon, 06 Aug 2018 11:26:02: 21000000 INFO @ Mon, 06 Aug 2018 11:26:04: 21000000 INFO @ Mon, 06 Aug 2018 11:26:08: 22000000 INFO @ Mon, 06 Aug 2018 11:26:09: 22000000 INFO @ Mon, 06 Aug 2018 11:26:11: 22000000 INFO @ Mon, 06 Aug 2018 11:26:15: 23000000 INFO @ Mon, 06 Aug 2018 11:26:15: 23000000 INFO @ Mon, 06 Aug 2018 11:26:18: 23000000 INFO @ Mon, 06 Aug 2018 11:26:21: 24000000 INFO @ Mon, 06 Aug 2018 11:26:22: 24000000 INFO @ Mon, 06 Aug 2018 11:26:25: 24000000 INFO @ Mon, 06 Aug 2018 11:26:28: 25000000 INFO @ Mon, 06 Aug 2018 11:26:28: 25000000 INFO @ Mon, 06 Aug 2018 11:26:31: 25000000 INFO @ Mon, 06 Aug 2018 11:26:35: 26000000 INFO @ Mon, 06 Aug 2018 11:26:35: 26000000 INFO @ Mon, 06 Aug 2018 11:26:38: 26000000 INFO @ Mon, 06 Aug 2018 11:26:41: 27000000 INFO @ Mon, 06 Aug 2018 11:26:42: 27000000 INFO @ Mon, 06 Aug 2018 11:26:45: 27000000 INFO @ Mon, 06 Aug 2018 11:26:48: 28000000 INFO @ Mon, 06 Aug 2018 11:26:48: 28000000 INFO @ Mon, 06 Aug 2018 11:26:52: 28000000 INFO @ Mon, 06 Aug 2018 11:26:54: 29000000 INFO @ Mon, 06 Aug 2018 11:26:55: 29000000 INFO @ Mon, 06 Aug 2018 11:26:58: 29000000 INFO @ Mon, 06 Aug 2018 11:27:01: 30000000 INFO @ Mon, 06 Aug 2018 11:27:01: 30000000 INFO @ Mon, 06 Aug 2018 11:27:05: 30000000 INFO @ Mon, 06 Aug 2018 11:27:08: 31000000 INFO @ Mon, 06 Aug 2018 11:27:08: 31000000 INFO @ Mon, 06 Aug 2018 11:27:12: 31000000 INFO @ Mon, 06 Aug 2018 11:27:14: 32000000 INFO @ Mon, 06 Aug 2018 11:27:15: 32000000 INFO @ Mon, 06 Aug 2018 11:27:19: 32000000 INFO @ Mon, 06 Aug 2018 11:27:21: 33000000 INFO @ Mon, 06 Aug 2018 11:27:21: 33000000 INFO @ Mon, 06 Aug 2018 11:27:25: 33000000 INFO @ Mon, 06 Aug 2018 11:27:28: 34000000 INFO @ Mon, 06 Aug 2018 11:27:28: 34000000 INFO @ Mon, 06 Aug 2018 11:27:32: 34000000 INFO @ Mon, 06 Aug 2018 11:27:34: 35000000 INFO @ Mon, 06 Aug 2018 11:27:35: 35000000 INFO @ Mon, 06 Aug 2018 11:27:39: 35000000 INFO @ Mon, 06 Aug 2018 11:27:41: 36000000 INFO @ Mon, 06 Aug 2018 11:27:41: 36000000 INFO @ Mon, 06 Aug 2018 11:27:46: 36000000 INFO @ Mon, 06 Aug 2018 11:27:48: 37000000 INFO @ Mon, 06 Aug 2018 11:27:48: 37000000 INFO @ Mon, 06 Aug 2018 11:27:53: 37000000 INFO @ Mon, 06 Aug 2018 11:27:54: 38000000 INFO @ Mon, 06 Aug 2018 11:27:55: 38000000 INFO @ Mon, 06 Aug 2018 11:28:00: 38000000 INFO @ Mon, 06 Aug 2018 11:28:01: 39000000 INFO @ Mon, 06 Aug 2018 11:28:01: 39000000 INFO @ Mon, 06 Aug 2018 11:28:06: 39000000 INFO @ Mon, 06 Aug 2018 11:28:08: 40000000 INFO @ Mon, 06 Aug 2018 11:28:08: 40000000 INFO @ Mon, 06 Aug 2018 11:28:13: 40000000 INFO @ Mon, 06 Aug 2018 11:28:14: 41000000 INFO @ Mon, 06 Aug 2018 11:28:14: 41000000 INFO @ Mon, 06 Aug 2018 11:28:20: 41000000 INFO @ Mon, 06 Aug 2018 11:28:21: 42000000 INFO @ Mon, 06 Aug 2018 11:28:21: 42000000 INFO @ Mon, 06 Aug 2018 11:28:26: 42000000 INFO @ Mon, 06 Aug 2018 11:28:28: 43000000 INFO @ Mon, 06 Aug 2018 11:28:28: 43000000 INFO @ Mon, 06 Aug 2018 11:28:33: 43000000 INFO @ Mon, 06 Aug 2018 11:28:34: 44000000 INFO @ Mon, 06 Aug 2018 11:28:34: 44000000 INFO @ Mon, 06 Aug 2018 11:28:40: 44000000 INFO @ Mon, 06 Aug 2018 11:28:41: 45000000 INFO @ Mon, 06 Aug 2018 11:28:41: 45000000 INFO @ Mon, 06 Aug 2018 11:28:46: 45000000 INFO @ Mon, 06 Aug 2018 11:28:48: 46000000 INFO @ Mon, 06 Aug 2018 11:28:48: 46000000 INFO @ Mon, 06 Aug 2018 11:28:53: 46000000 INFO @ Mon, 06 Aug 2018 11:28:54: 47000000 INFO @ Mon, 06 Aug 2018 11:28:55: 47000000 INFO @ Mon, 06 Aug 2018 11:29:00: 47000000 INFO @ Mon, 06 Aug 2018 11:29:01: 48000000 INFO @ Mon, 06 Aug 2018 11:29:02: 48000000 INFO @ Mon, 06 Aug 2018 11:29:06: 48000000 INFO @ Mon, 06 Aug 2018 11:29:08: 49000000 INFO @ Mon, 06 Aug 2018 11:29:09: 49000000 INFO @ Mon, 06 Aug 2018 11:29:13: 49000000 INFO @ Mon, 06 Aug 2018 11:29:15: 50000000 INFO @ Mon, 06 Aug 2018 11:29:17: 50000000 INFO @ Mon, 06 Aug 2018 11:29:19: 50000000 INFO @ Mon, 06 Aug 2018 11:29:22: 51000000 INFO @ Mon, 06 Aug 2018 11:29:24: 51000000 INFO @ Mon, 06 Aug 2018 11:29:26: 51000000 INFO @ Mon, 06 Aug 2018 11:29:29: 52000000 INFO @ Mon, 06 Aug 2018 11:29:31: 52000000 INFO @ Mon, 06 Aug 2018 11:29:32: 52000000 INFO @ Mon, 06 Aug 2018 11:29:37: 53000000 INFO @ Mon, 06 Aug 2018 11:29:38: 53000000 INFO @ Mon, 06 Aug 2018 11:29:39: 53000000 INFO @ Mon, 06 Aug 2018 11:29:43: 54000000 INFO @ Mon, 06 Aug 2018 11:29:45: 54000000 INFO @ Mon, 06 Aug 2018 11:29:46: 54000000 INFO @ Mon, 06 Aug 2018 11:29:50: 55000000 INFO @ Mon, 06 Aug 2018 11:29:51: 55000000 INFO @ Mon, 06 Aug 2018 11:29:52: 55000000 INFO @ Mon, 06 Aug 2018 11:29:56: 56000000 INFO @ Mon, 06 Aug 2018 11:29:58: 56000000 INFO @ Mon, 06 Aug 2018 11:29:59: 56000000 INFO @ Mon, 06 Aug 2018 11:30:03: 57000000 INFO @ Mon, 06 Aug 2018 11:30:04: 57000000 INFO @ Mon, 06 Aug 2018 11:30:06: 57000000 INFO @ Mon, 06 Aug 2018 11:30:07: #1 tag size is determined as 49 bps INFO @ Mon, 06 Aug 2018 11:30:07: #1 tag size = 49 INFO @ Mon, 06 Aug 2018 11:30:07: #1 total tags in treatment: 57527284 INFO @ Mon, 06 Aug 2018 11:30:07: #1 user defined the maximum tags... INFO @ Mon, 06 Aug 2018 11:30:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Aug 2018 11:30:08: #1 tag size is determined as 49 bps INFO @ Mon, 06 Aug 2018 11:30:08: #1 tag size = 49 INFO @ Mon, 06 Aug 2018 11:30:08: #1 total tags in treatment: 57527284 INFO @ Mon, 06 Aug 2018 11:30:08: #1 user defined the maximum tags... INFO @ Mon, 06 Aug 2018 11:30:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Aug 2018 11:30:08: #1 tags after filtering in treatment: 57527284 INFO @ Mon, 06 Aug 2018 11:30:08: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Aug 2018 11:30:08: #1 finished! INFO @ Mon, 06 Aug 2018 11:30:08: #2 Build Peak Model... INFO @ Mon, 06 Aug 2018 11:30:08: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Aug 2018 11:30:09: #1 tags after filtering in treatment: 57527284 INFO @ Mon, 06 Aug 2018 11:30:09: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Aug 2018 11:30:09: #1 finished! INFO @ Mon, 06 Aug 2018 11:30:09: #2 Build Peak Model... INFO @ Mon, 06 Aug 2018 11:30:09: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Aug 2018 11:30:10: #1 tag size is determined as 49 bps INFO @ Mon, 06 Aug 2018 11:30:10: #1 tag size = 49 INFO @ Mon, 06 Aug 2018 11:30:10: #1 total tags in treatment: 57527284 INFO @ Mon, 06 Aug 2018 11:30:10: #1 user defined the maximum tags... INFO @ Mon, 06 Aug 2018 11:30:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Aug 2018 11:30:11: #1 tags after filtering in treatment: 57527284 INFO @ Mon, 06 Aug 2018 11:30:11: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Aug 2018 11:30:11: #1 finished! INFO @ Mon, 06 Aug 2018 11:30:11: #2 Build Peak Model... INFO @ Mon, 06 Aug 2018 11:30:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Aug 2018 11:30:12: #2 number of paired peaks: 0 WARNING @ Mon, 06 Aug 2018 11:30:12: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Aug 2018 11:30:12: Process for pairing-model is terminated! cat: SRX2998859.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2998859.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2998859.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2998859.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Aug 2018 11:30:13: #2 number of paired peaks: 0 WARNING @ Mon, 06 Aug 2018 11:30:13: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Aug 2018 11:30:13: Process for pairing-model is terminated! cat: SRX2998859.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2998859.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2998859.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2998859.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Aug 2018 11:30:14: #2 number of paired peaks: 0 WARNING @ Mon, 06 Aug 2018 11:30:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Aug 2018 11:30:14: Process for pairing-model is terminated! cat: SRX2998859.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2998859.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2998859.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2998859.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。