Job ID = 10175248 sra ファイルのダウンロード中... Completed: 1339112K bytes transferred in 55 seconds (196550K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 70289234 spots for /home/okishinya/chipatlas/results/dm3/SRX2804226/SRR5534654.sra Written 70289234 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:31:14 70289234 reads; of these: 70289234 (100.00%) were unpaired; of these: 2175256 (3.09%) aligned 0 times 45976010 (65.41%) aligned exactly 1 time 22137968 (31.50%) aligned >1 times 96.91% overall alignment rate Time searching: 00:31:14 Overall time: 00:31:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdupse_core] 11282542 / 68113978 = 0.1656 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 06 Nov 2017 12:42:48: # Command line: callpeak -t SRX2804226.bam -f BAM -g dm -n SRX2804226.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2804226.20 # format = BAM # ChIP-seq file = ['SRX2804226.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 12:42:48: #1 read tag files... INFO @ Mon, 06 Nov 2017 12:42:48: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 12:42:48: # Command line: callpeak -t SRX2804226.bam -f BAM -g dm -n SRX2804226.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2804226.10 # format = BAM # ChIP-seq file = ['SRX2804226.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 12:42:48: #1 read tag files... INFO @ Mon, 06 Nov 2017 12:42:48: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 12:42:48: # Command line: callpeak -t SRX2804226.bam -f BAM -g dm -n SRX2804226.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2804226.05 # format = BAM # ChIP-seq file = ['SRX2804226.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 06 Nov 2017 12:42:48: #1 read tag files... INFO @ Mon, 06 Nov 2017 12:42:48: #1 read treatment tags... INFO @ Mon, 06 Nov 2017 12:42:56: 1000000 INFO @ Mon, 06 Nov 2017 12:42:57: 1000000 INFO @ Mon, 06 Nov 2017 12:42:58: 1000000 INFO @ Mon, 06 Nov 2017 12:43:05: 2000000 INFO @ Mon, 06 Nov 2017 12:43:06: 2000000 INFO @ Mon, 06 Nov 2017 12:43:08: 2000000 INFO @ Mon, 06 Nov 2017 12:43:13: 3000000 INFO @ Mon, 06 Nov 2017 12:43:14: 3000000 INFO @ Mon, 06 Nov 2017 12:43:17: 3000000 INFO @ Mon, 06 Nov 2017 12:43:21: 4000000 INFO @ Mon, 06 Nov 2017 12:43:23: 4000000 INFO @ Mon, 06 Nov 2017 12:43:27: 4000000 INFO @ Mon, 06 Nov 2017 12:43:29: 5000000 INFO @ Mon, 06 Nov 2017 12:43:32: 5000000 INFO @ Mon, 06 Nov 2017 12:43:37: 5000000 INFO @ Mon, 06 Nov 2017 12:43:38: 6000000 INFO @ Mon, 06 Nov 2017 12:43:40: 6000000 INFO @ Mon, 06 Nov 2017 12:43:46: 6000000 INFO @ Mon, 06 Nov 2017 12:43:47: 7000000 INFO @ Mon, 06 Nov 2017 12:43:48: 7000000 INFO @ Mon, 06 Nov 2017 12:43:55: 8000000 INFO @ Mon, 06 Nov 2017 12:43:56: 7000000 INFO @ Mon, 06 Nov 2017 12:43:57: 8000000 INFO @ Mon, 06 Nov 2017 12:44:04: 9000000 INFO @ Mon, 06 Nov 2017 12:44:05: 8000000 INFO @ Mon, 06 Nov 2017 12:44:05: 9000000 INFO @ Mon, 06 Nov 2017 12:44:13: 10000000 INFO @ Mon, 06 Nov 2017 12:44:14: 10000000 INFO @ Mon, 06 Nov 2017 12:44:14: 9000000 INFO @ Mon, 06 Nov 2017 12:44:21: 11000000 INFO @ Mon, 06 Nov 2017 12:44:22: 11000000 INFO @ Mon, 06 Nov 2017 12:44:24: 10000000 INFO @ Mon, 06 Nov 2017 12:44:30: 12000000 INFO @ Mon, 06 Nov 2017 12:44:30: 12000000 INFO @ Mon, 06 Nov 2017 12:44:33: 11000000 INFO @ Mon, 06 Nov 2017 12:44:38: 13000000 INFO @ Mon, 06 Nov 2017 12:44:39: 13000000 INFO @ Mon, 06 Nov 2017 12:44:42: 12000000 INFO @ Mon, 06 Nov 2017 12:44:47: 14000000 INFO @ Mon, 06 Nov 2017 12:44:47: 14000000 INFO @ Mon, 06 Nov 2017 12:44:52: 13000000 INFO @ Mon, 06 Nov 2017 12:44:56: 15000000 INFO @ Mon, 06 Nov 2017 12:44:56: 15000000 INFO @ Mon, 06 Nov 2017 12:45:01: 14000000 INFO @ Mon, 06 Nov 2017 12:45:04: 16000000 INFO @ Mon, 06 Nov 2017 12:45:04: 16000000 INFO @ Mon, 06 Nov 2017 12:45:10: 15000000 INFO @ Mon, 06 Nov 2017 12:45:12: 17000000 INFO @ Mon, 06 Nov 2017 12:45:13: 17000000 INFO @ Mon, 06 Nov 2017 12:45:20: 16000000 INFO @ Mon, 06 Nov 2017 12:45:21: 18000000 INFO @ Mon, 06 Nov 2017 12:45:21: 18000000 INFO @ Mon, 06 Nov 2017 12:45:29: 17000000 INFO @ Mon, 06 Nov 2017 12:45:29: 19000000 INFO @ Mon, 06 Nov 2017 12:45:30: 19000000 INFO @ Mon, 06 Nov 2017 12:45:38: 20000000 INFO @ Mon, 06 Nov 2017 12:45:38: 18000000 INFO @ Mon, 06 Nov 2017 12:45:38: 20000000 INFO @ Mon, 06 Nov 2017 12:45:46: 21000000 INFO @ Mon, 06 Nov 2017 12:45:47: 21000000 INFO @ Mon, 06 Nov 2017 12:45:47: 19000000 INFO @ Mon, 06 Nov 2017 12:45:54: 22000000 INFO @ Mon, 06 Nov 2017 12:45:55: 22000000 INFO @ Mon, 06 Nov 2017 12:45:57: 20000000 INFO @ Mon, 06 Nov 2017 12:46:03: 23000000 INFO @ Mon, 06 Nov 2017 12:46:04: 23000000 INFO @ Mon, 06 Nov 2017 12:46:06: 21000000 INFO @ Mon, 06 Nov 2017 12:46:11: 24000000 INFO @ Mon, 06 Nov 2017 12:46:13: 24000000 INFO @ Mon, 06 Nov 2017 12:46:15: 22000000 INFO @ Mon, 06 Nov 2017 12:46:19: 25000000 INFO @ Mon, 06 Nov 2017 12:46:21: 25000000 INFO @ Mon, 06 Nov 2017 12:46:25: 23000000 INFO @ Mon, 06 Nov 2017 12:46:28: 26000000 INFO @ Mon, 06 Nov 2017 12:46:30: 26000000 INFO @ Mon, 06 Nov 2017 12:46:34: 24000000 INFO @ Mon, 06 Nov 2017 12:46:36: 27000000 INFO @ Mon, 06 Nov 2017 12:46:38: 27000000 INFO @ Mon, 06 Nov 2017 12:46:43: 25000000 INFO @ Mon, 06 Nov 2017 12:46:45: 28000000 INFO @ Mon, 06 Nov 2017 12:46:47: 28000000 INFO @ Mon, 06 Nov 2017 12:46:51: 26000000 INFO @ Mon, 06 Nov 2017 12:46:54: 29000000 INFO @ Mon, 06 Nov 2017 12:46:56: 29000000 INFO @ Mon, 06 Nov 2017 12:46:59: 27000000 INFO @ Mon, 06 Nov 2017 12:47:03: 30000000 INFO @ Mon, 06 Nov 2017 12:47:05: 30000000 INFO @ Mon, 06 Nov 2017 12:47:07: 28000000 INFO @ Mon, 06 Nov 2017 12:47:11: 31000000 INFO @ Mon, 06 Nov 2017 12:47:14: 31000000 INFO @ Mon, 06 Nov 2017 12:47:15: 29000000 INFO @ Mon, 06 Nov 2017 12:47:20: 32000000 INFO @ Mon, 06 Nov 2017 12:47:22: 32000000 INFO @ Mon, 06 Nov 2017 12:47:23: 30000000 INFO @ Mon, 06 Nov 2017 12:47:29: 33000000 INFO @ Mon, 06 Nov 2017 12:47:31: 31000000 INFO @ Mon, 06 Nov 2017 12:47:31: 33000000 INFO @ Mon, 06 Nov 2017 12:47:38: 34000000 INFO @ Mon, 06 Nov 2017 12:47:39: 32000000 INFO @ Mon, 06 Nov 2017 12:47:40: 34000000 INFO @ Mon, 06 Nov 2017 12:47:47: 33000000 INFO @ Mon, 06 Nov 2017 12:47:47: 35000000 INFO @ Mon, 06 Nov 2017 12:47:49: 35000000 INFO @ Mon, 06 Nov 2017 12:47:55: 34000000 INFO @ Mon, 06 Nov 2017 12:47:56: 36000000 INFO @ Mon, 06 Nov 2017 12:47:58: 36000000 INFO @ Mon, 06 Nov 2017 12:48:03: 35000000 INFO @ Mon, 06 Nov 2017 12:48:05: 37000000 INFO @ Mon, 06 Nov 2017 12:48:06: 37000000 INFO @ Mon, 06 Nov 2017 12:48:10: 36000000 INFO @ Mon, 06 Nov 2017 12:48:14: 38000000 INFO @ Mon, 06 Nov 2017 12:48:15: 38000000 INFO @ Mon, 06 Nov 2017 12:48:18: 37000000 INFO @ Mon, 06 Nov 2017 12:48:23: 39000000 INFO @ Mon, 06 Nov 2017 12:48:24: 39000000 INFO @ Mon, 06 Nov 2017 12:48:26: 38000000 INFO @ Mon, 06 Nov 2017 12:48:32: 40000000 INFO @ Mon, 06 Nov 2017 12:48:33: 40000000 INFO @ Mon, 06 Nov 2017 12:48:34: 39000000 INFO @ Mon, 06 Nov 2017 12:48:40: 41000000 INFO @ Mon, 06 Nov 2017 12:48:41: 41000000 INFO @ Mon, 06 Nov 2017 12:48:42: 40000000 INFO @ Mon, 06 Nov 2017 12:48:49: 42000000 INFO @ Mon, 06 Nov 2017 12:48:50: 42000000 INFO @ Mon, 06 Nov 2017 12:48:51: 41000000 INFO @ Mon, 06 Nov 2017 12:48:57: 43000000 INFO @ Mon, 06 Nov 2017 12:48:58: 43000000 INFO @ Mon, 06 Nov 2017 12:48:59: 42000000 INFO @ Mon, 06 Nov 2017 12:49:06: 44000000 INFO @ Mon, 06 Nov 2017 12:49:07: 44000000 INFO @ Mon, 06 Nov 2017 12:49:07: 43000000 INFO @ Mon, 06 Nov 2017 12:49:14: 45000000 INFO @ Mon, 06 Nov 2017 12:49:15: 45000000 INFO @ Mon, 06 Nov 2017 12:49:16: 44000000 INFO @ Mon, 06 Nov 2017 12:49:23: 46000000 INFO @ Mon, 06 Nov 2017 12:49:24: 46000000 INFO @ Mon, 06 Nov 2017 12:49:24: 45000000 INFO @ Mon, 06 Nov 2017 12:49:31: 47000000 INFO @ Mon, 06 Nov 2017 12:49:32: 47000000 INFO @ Mon, 06 Nov 2017 12:49:33: 46000000 INFO @ Mon, 06 Nov 2017 12:49:40: 48000000 INFO @ Mon, 06 Nov 2017 12:49:40: 48000000 INFO @ Mon, 06 Nov 2017 12:49:41: 47000000 INFO @ Mon, 06 Nov 2017 12:49:48: 49000000 INFO @ Mon, 06 Nov 2017 12:49:49: 49000000 INFO @ Mon, 06 Nov 2017 12:49:49: 48000000 INFO @ Mon, 06 Nov 2017 12:49:56: 50000000 INFO @ Mon, 06 Nov 2017 12:49:57: 50000000 INFO @ Mon, 06 Nov 2017 12:49:58: 49000000 INFO @ Mon, 06 Nov 2017 12:50:05: 51000000 INFO @ Mon, 06 Nov 2017 12:50:06: 51000000 INFO @ Mon, 06 Nov 2017 12:50:06: 50000000 INFO @ Mon, 06 Nov 2017 12:50:15: 52000000 INFO @ Mon, 06 Nov 2017 12:50:15: 52000000 INFO @ Mon, 06 Nov 2017 12:50:16: 51000000 INFO @ Mon, 06 Nov 2017 12:50:25: 53000000 INFO @ Mon, 06 Nov 2017 12:50:25: 53000000 INFO @ Mon, 06 Nov 2017 12:50:26: 52000000 INFO @ Mon, 06 Nov 2017 12:50:35: 54000000 INFO @ Mon, 06 Nov 2017 12:50:35: 54000000 INFO @ Mon, 06 Nov 2017 12:50:35: 53000000 INFO @ Mon, 06 Nov 2017 12:50:44: 55000000 INFO @ Mon, 06 Nov 2017 12:50:44: 55000000 INFO @ Mon, 06 Nov 2017 12:50:45: 54000000 INFO @ Mon, 06 Nov 2017 12:50:54: 56000000 INFO @ Mon, 06 Nov 2017 12:50:54: 56000000 INFO @ Mon, 06 Nov 2017 12:50:54: 55000000 INFO @ Mon, 06 Nov 2017 12:51:02: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 12:51:02: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 12:51:02: #1 total tags in treatment: 56831436 INFO @ Mon, 06 Nov 2017 12:51:02: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 12:51:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 12:51:03: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 12:51:03: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 12:51:03: #1 total tags in treatment: 56831436 INFO @ Mon, 06 Nov 2017 12:51:03: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 12:51:03: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 12:51:03: #1 tags after filtering in treatment: 56831436 INFO @ Mon, 06 Nov 2017 12:51:03: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 12:51:03: #1 finished! INFO @ Mon, 06 Nov 2017 12:51:03: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 12:51:03: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 12:51:04: 56000000 INFO @ Mon, 06 Nov 2017 12:51:04: #1 tags after filtering in treatment: 56831436 INFO @ Mon, 06 Nov 2017 12:51:04: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 12:51:04: #1 finished! INFO @ Mon, 06 Nov 2017 12:51:04: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 12:51:04: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 12:51:06: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 12:51:06: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 12:51:06: Process for pairing-model is terminated! cat: SRX2804226.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2804226.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804226.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804226.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Nov 2017 12:51:07: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 12:51:07: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 12:51:07: Process for pairing-model is terminated! cat: SRX2804226.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2804226.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804226.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804226.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Mon, 06 Nov 2017 12:51:10: #1 tag size is determined as 51 bps INFO @ Mon, 06 Nov 2017 12:51:10: #1 tag size = 51 INFO @ Mon, 06 Nov 2017 12:51:10: #1 total tags in treatment: 56831436 INFO @ Mon, 06 Nov 2017 12:51:10: #1 user defined the maximum tags... INFO @ Mon, 06 Nov 2017 12:51:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 06 Nov 2017 12:51:11: #1 tags after filtering in treatment: 56831436 INFO @ Mon, 06 Nov 2017 12:51:11: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 06 Nov 2017 12:51:11: #1 finished! INFO @ Mon, 06 Nov 2017 12:51:11: #2 Build Peak Model... INFO @ Mon, 06 Nov 2017 12:51:11: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 06 Nov 2017 12:51:15: #2 number of paired peaks: 0 WARNING @ Mon, 06 Nov 2017 12:51:15: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 06 Nov 2017 12:51:15: Process for pairing-model is terminated! cat: SRX2804226.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2804226.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804226.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2804226.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。