Job ID = 11171254 sra ファイルのダウンロード中... Completed: 3184385K bytes transferred in 130 seconds (200112K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 56238207 spots for /home/okishinya/chipatlas/results/dm3/SRX2659845/SRR5364418.sra Written 56238207 spots for /home/okishinya/chipatlas/results/dm3/SRX2659845/SRR5364418.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:24:17 56238207 reads; of these: 56238207 (100.00%) were paired; of these: 25716138 (45.73%) aligned concordantly 0 times 26791818 (47.64%) aligned concordantly exactly 1 time 3730251 (6.63%) aligned concordantly >1 times ---- 25716138 pairs aligned concordantly 0 times; of these: 2474760 (9.62%) aligned discordantly 1 time ---- 23241378 pairs aligned 0 times concordantly or discordantly; of these: 46482756 mates make up the pairs; of these: 43045343 (92.60%) aligned 0 times 2153167 (4.63%) aligned exactly 1 time 1284246 (2.76%) aligned >1 times 61.73% overall alignment rate Time searching: 01:24:18 Overall time: 01:24:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2751088 / 32396987 = 0.0849 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 15:14:14: # Command line: callpeak -t SRX2659845.bam -f BAM -g dm -n SRX2659845.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2659845.05 # format = BAM # ChIP-seq file = ['SRX2659845.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:14:14: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:14:14: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:14:14: # Command line: callpeak -t SRX2659845.bam -f BAM -g dm -n SRX2659845.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2659845.10 # format = BAM # ChIP-seq file = ['SRX2659845.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:14:14: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:14:14: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:14:14: # Command line: callpeak -t SRX2659845.bam -f BAM -g dm -n SRX2659845.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2659845.20 # format = BAM # ChIP-seq file = ['SRX2659845.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:14:14: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:14:14: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:14:21: 1000000 INFO @ Sat, 08 Sep 2018 15:14:21: 1000000 INFO @ Sat, 08 Sep 2018 15:14:21: 1000000 INFO @ Sat, 08 Sep 2018 15:14:27: 2000000 INFO @ Sat, 08 Sep 2018 15:14:27: 2000000 INFO @ Sat, 08 Sep 2018 15:14:27: 2000000 INFO @ Sat, 08 Sep 2018 15:14:33: 3000000 INFO @ Sat, 08 Sep 2018 15:14:33: 3000000 INFO @ Sat, 08 Sep 2018 15:14:34: 3000000 INFO @ Sat, 08 Sep 2018 15:14:40: 4000000 INFO @ Sat, 08 Sep 2018 15:14:40: 4000000 INFO @ Sat, 08 Sep 2018 15:14:40: 4000000 INFO @ Sat, 08 Sep 2018 15:14:46: 5000000 INFO @ Sat, 08 Sep 2018 15:14:46: 5000000 INFO @ Sat, 08 Sep 2018 15:14:46: 5000000 INFO @ Sat, 08 Sep 2018 15:14:52: 6000000 INFO @ Sat, 08 Sep 2018 15:14:52: 6000000 INFO @ Sat, 08 Sep 2018 15:14:52: 6000000 INFO @ Sat, 08 Sep 2018 15:14:59: 7000000 INFO @ Sat, 08 Sep 2018 15:14:59: 7000000 INFO @ Sat, 08 Sep 2018 15:14:59: 7000000 INFO @ Sat, 08 Sep 2018 15:15:05: 8000000 INFO @ Sat, 08 Sep 2018 15:15:05: 8000000 INFO @ Sat, 08 Sep 2018 15:15:05: 8000000 INFO @ Sat, 08 Sep 2018 15:15:11: 9000000 INFO @ Sat, 08 Sep 2018 15:15:12: 9000000 INFO @ Sat, 08 Sep 2018 15:15:12: 9000000 INFO @ Sat, 08 Sep 2018 15:15:17: 10000000 INFO @ Sat, 08 Sep 2018 15:15:18: 10000000 INFO @ Sat, 08 Sep 2018 15:15:18: 10000000 INFO @ Sat, 08 Sep 2018 15:15:24: 11000000 INFO @ Sat, 08 Sep 2018 15:15:25: 11000000 INFO @ Sat, 08 Sep 2018 15:15:25: 11000000 INFO @ Sat, 08 Sep 2018 15:15:30: 12000000 INFO @ Sat, 08 Sep 2018 15:15:31: 12000000 INFO @ Sat, 08 Sep 2018 15:15:31: 12000000 INFO @ Sat, 08 Sep 2018 15:15:36: 13000000 INFO @ Sat, 08 Sep 2018 15:15:37: 13000000 INFO @ Sat, 08 Sep 2018 15:15:37: 13000000 INFO @ Sat, 08 Sep 2018 15:15:43: 14000000 INFO @ Sat, 08 Sep 2018 15:15:44: 14000000 INFO @ Sat, 08 Sep 2018 15:15:44: 14000000 INFO @ Sat, 08 Sep 2018 15:15:49: 15000000 INFO @ Sat, 08 Sep 2018 15:15:50: 15000000 INFO @ Sat, 08 Sep 2018 15:15:50: 15000000 INFO @ Sat, 08 Sep 2018 15:15:55: 16000000 INFO @ Sat, 08 Sep 2018 15:15:57: 16000000 INFO @ Sat, 08 Sep 2018 15:15:57: 16000000 INFO @ Sat, 08 Sep 2018 15:16:01: 17000000 INFO @ Sat, 08 Sep 2018 15:16:03: 17000000 INFO @ Sat, 08 Sep 2018 15:16:03: 17000000 INFO @ Sat, 08 Sep 2018 15:16:08: 18000000 INFO @ Sat, 08 Sep 2018 15:16:09: 18000000 INFO @ Sat, 08 Sep 2018 15:16:09: 18000000 INFO @ Sat, 08 Sep 2018 15:16:14: 19000000 INFO @ Sat, 08 Sep 2018 15:16:16: 19000000 INFO @ Sat, 08 Sep 2018 15:16:16: 19000000 INFO @ Sat, 08 Sep 2018 15:16:20: 20000000 INFO @ Sat, 08 Sep 2018 15:16:22: 20000000 INFO @ Sat, 08 Sep 2018 15:16:22: 20000000 INFO @ Sat, 08 Sep 2018 15:16:27: 21000000 INFO @ Sat, 08 Sep 2018 15:16:29: 21000000 INFO @ Sat, 08 Sep 2018 15:16:29: 21000000 INFO @ Sat, 08 Sep 2018 15:16:33: 22000000 INFO @ Sat, 08 Sep 2018 15:16:35: 22000000 INFO @ Sat, 08 Sep 2018 15:16:35: 22000000 INFO @ Sat, 08 Sep 2018 15:16:39: 23000000 INFO @ Sat, 08 Sep 2018 15:16:42: 23000000 INFO @ Sat, 08 Sep 2018 15:16:42: 23000000 INFO @ Sat, 08 Sep 2018 15:16:45: 24000000 INFO @ Sat, 08 Sep 2018 15:16:48: 24000000 INFO @ Sat, 08 Sep 2018 15:16:48: 24000000 INFO @ Sat, 08 Sep 2018 15:16:52: 25000000 INFO @ Sat, 08 Sep 2018 15:16:54: 25000000 INFO @ Sat, 08 Sep 2018 15:16:54: 25000000 INFO @ Sat, 08 Sep 2018 15:16:58: 26000000 INFO @ Sat, 08 Sep 2018 15:17:01: 26000000 INFO @ Sat, 08 Sep 2018 15:17:01: 26000000 INFO @ Sat, 08 Sep 2018 15:17:04: 27000000 INFO @ Sat, 08 Sep 2018 15:17:07: 27000000 INFO @ Sat, 08 Sep 2018 15:17:07: 27000000 INFO @ Sat, 08 Sep 2018 15:17:10: 28000000 INFO @ Sat, 08 Sep 2018 15:17:14: 28000000 INFO @ Sat, 08 Sep 2018 15:17:14: 28000000 INFO @ Sat, 08 Sep 2018 15:17:17: 29000000 INFO @ Sat, 08 Sep 2018 15:17:20: 29000000 INFO @ Sat, 08 Sep 2018 15:17:20: 29000000 INFO @ Sat, 08 Sep 2018 15:17:23: 30000000 INFO @ Sat, 08 Sep 2018 15:17:26: 30000000 INFO @ Sat, 08 Sep 2018 15:17:26: 30000000 INFO @ Sat, 08 Sep 2018 15:17:29: 31000000 INFO @ Sat, 08 Sep 2018 15:17:33: 31000000 INFO @ Sat, 08 Sep 2018 15:17:33: 31000000 INFO @ Sat, 08 Sep 2018 15:17:35: 32000000 INFO @ Sat, 08 Sep 2018 15:17:39: 32000000 INFO @ Sat, 08 Sep 2018 15:17:39: 32000000 INFO @ Sat, 08 Sep 2018 15:17:42: 33000000 INFO @ Sat, 08 Sep 2018 15:17:46: 33000000 INFO @ Sat, 08 Sep 2018 15:17:46: 33000000 INFO @ Sat, 08 Sep 2018 15:17:48: 34000000 INFO @ Sat, 08 Sep 2018 15:17:52: 34000000 INFO @ Sat, 08 Sep 2018 15:17:52: 34000000 INFO @ Sat, 08 Sep 2018 15:17:54: 35000000 INFO @ Sat, 08 Sep 2018 15:17:59: 35000000 INFO @ Sat, 08 Sep 2018 15:17:59: 35000000 INFO @ Sat, 08 Sep 2018 15:18:00: 36000000 INFO @ Sat, 08 Sep 2018 15:18:05: 36000000 INFO @ Sat, 08 Sep 2018 15:18:05: 36000000 INFO @ Sat, 08 Sep 2018 15:18:06: 37000000 INFO @ Sat, 08 Sep 2018 15:18:12: 37000000 INFO @ Sat, 08 Sep 2018 15:18:12: 37000000 INFO @ Sat, 08 Sep 2018 15:18:12: 38000000 INFO @ Sat, 08 Sep 2018 15:18:18: 38000000 INFO @ Sat, 08 Sep 2018 15:18:18: 38000000 INFO @ Sat, 08 Sep 2018 15:18:19: 39000000 INFO @ Sat, 08 Sep 2018 15:18:25: 40000000 INFO @ Sat, 08 Sep 2018 15:18:25: 39000000 INFO @ Sat, 08 Sep 2018 15:18:25: 39000000 INFO @ Sat, 08 Sep 2018 15:18:31: 41000000 INFO @ Sat, 08 Sep 2018 15:18:31: 40000000 INFO @ Sat, 08 Sep 2018 15:18:31: 40000000 INFO @ Sat, 08 Sep 2018 15:18:37: 42000000 INFO @ Sat, 08 Sep 2018 15:18:38: 41000000 INFO @ Sat, 08 Sep 2018 15:18:38: 41000000 INFO @ Sat, 08 Sep 2018 15:18:43: 43000000 INFO @ Sat, 08 Sep 2018 15:18:44: 42000000 INFO @ Sat, 08 Sep 2018 15:18:44: 42000000 INFO @ Sat, 08 Sep 2018 15:18:50: 44000000 INFO @ Sat, 08 Sep 2018 15:18:51: 43000000 INFO @ Sat, 08 Sep 2018 15:18:51: 43000000 INFO @ Sat, 08 Sep 2018 15:18:56: 45000000 INFO @ Sat, 08 Sep 2018 15:18:58: 44000000 INFO @ Sat, 08 Sep 2018 15:18:58: 44000000 INFO @ Sat, 08 Sep 2018 15:19:02: 46000000 INFO @ Sat, 08 Sep 2018 15:19:04: 45000000 INFO @ Sat, 08 Sep 2018 15:19:04: 45000000 INFO @ Sat, 08 Sep 2018 15:19:08: 47000000 INFO @ Sat, 08 Sep 2018 15:19:11: 46000000 INFO @ Sat, 08 Sep 2018 15:19:11: 46000000 INFO @ Sat, 08 Sep 2018 15:19:15: 48000000 INFO @ Sat, 08 Sep 2018 15:19:17: 47000000 INFO @ Sat, 08 Sep 2018 15:19:17: 47000000 INFO @ Sat, 08 Sep 2018 15:19:21: 49000000 INFO @ Sat, 08 Sep 2018 15:19:24: 48000000 INFO @ Sat, 08 Sep 2018 15:19:24: 48000000 INFO @ Sat, 08 Sep 2018 15:19:27: 50000000 INFO @ Sat, 08 Sep 2018 15:19:30: 49000000 INFO @ Sat, 08 Sep 2018 15:19:30: 49000000 INFO @ Sat, 08 Sep 2018 15:19:34: 51000000 INFO @ Sat, 08 Sep 2018 15:19:37: 50000000 INFO @ Sat, 08 Sep 2018 15:19:37: 50000000 INFO @ Sat, 08 Sep 2018 15:19:40: 52000000 INFO @ Sat, 08 Sep 2018 15:19:44: 51000000 INFO @ Sat, 08 Sep 2018 15:19:44: 51000000 INFO @ Sat, 08 Sep 2018 15:19:46: 53000000 INFO @ Sat, 08 Sep 2018 15:19:50: 52000000 INFO @ Sat, 08 Sep 2018 15:19:50: 52000000 INFO @ Sat, 08 Sep 2018 15:19:52: 54000000 INFO @ Sat, 08 Sep 2018 15:19:57: 53000000 INFO @ Sat, 08 Sep 2018 15:19:57: 53000000 INFO @ Sat, 08 Sep 2018 15:19:58: 55000000 INFO @ Sat, 08 Sep 2018 15:20:04: 54000000 INFO @ Sat, 08 Sep 2018 15:20:04: 54000000 INFO @ Sat, 08 Sep 2018 15:20:05: 56000000 INFO @ Sat, 08 Sep 2018 15:20:10: 55000000 INFO @ Sat, 08 Sep 2018 15:20:10: 55000000 INFO @ Sat, 08 Sep 2018 15:20:11: 57000000 INFO @ Sat, 08 Sep 2018 15:20:16: 56000000 INFO @ Sat, 08 Sep 2018 15:20:16: 56000000 INFO @ Sat, 08 Sep 2018 15:20:17: 58000000 INFO @ Sat, 08 Sep 2018 15:20:23: 57000000 INFO @ Sat, 08 Sep 2018 15:20:23: 57000000 INFO @ Sat, 08 Sep 2018 15:20:24: 59000000 INFO @ Sat, 08 Sep 2018 15:20:30: 58000000 INFO @ Sat, 08 Sep 2018 15:20:30: 58000000 INFO @ Sat, 08 Sep 2018 15:20:30: 60000000 INFO @ Sat, 08 Sep 2018 15:20:36: 59000000 INFO @ Sat, 08 Sep 2018 15:20:36: 59000000 INFO @ Sat, 08 Sep 2018 15:20:36: 61000000 INFO @ Sat, 08 Sep 2018 15:20:43: 62000000 INFO @ Sat, 08 Sep 2018 15:20:43: 60000000 INFO @ Sat, 08 Sep 2018 15:20:43: 60000000 INFO @ Sat, 08 Sep 2018 15:20:49: 63000000 INFO @ Sat, 08 Sep 2018 15:20:49: 61000000 INFO @ Sat, 08 Sep 2018 15:20:49: 61000000 INFO @ Sat, 08 Sep 2018 15:20:55: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 15:20:55: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 15:20:55: #1 total tags in treatment: 28029327 INFO @ Sat, 08 Sep 2018 15:20:55: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:20:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:20:56: #1 tags after filtering in treatment: 22053031 INFO @ Sat, 08 Sep 2018 15:20:56: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 08 Sep 2018 15:20:56: #1 finished! INFO @ Sat, 08 Sep 2018 15:20:56: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:20:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:20:56: 62000000 INFO @ Sat, 08 Sep 2018 15:20:56: 62000000 INFO @ Sat, 08 Sep 2018 15:20:58: #2 number of paired peaks: 1635 INFO @ Sat, 08 Sep 2018 15:20:58: start model_add_line... INFO @ Sat, 08 Sep 2018 15:20:58: start X-correlation... INFO @ Sat, 08 Sep 2018 15:20:58: end of X-cor INFO @ Sat, 08 Sep 2018 15:20:58: #2 finished! INFO @ Sat, 08 Sep 2018 15:20:58: #2 predicted fragment length is 65 bps INFO @ Sat, 08 Sep 2018 15:20:58: #2 alternative fragment length(s) may be 65 bps INFO @ Sat, 08 Sep 2018 15:20:58: #2.2 Generate R script for model : SRX2659845.20_model.r WARNING @ Sat, 08 Sep 2018 15:20:58: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 15:20:58: #2 You may need to consider one of the other alternative d(s): 65 WARNING @ Sat, 08 Sep 2018 15:20:58: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 15:20:58: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:20:58: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:21:03: 63000000 INFO @ Sat, 08 Sep 2018 15:21:03: 63000000 INFO @ Sat, 08 Sep 2018 15:21:09: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 15:21:09: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 15:21:09: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 15:21:09: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 15:21:09: #1 total tags in treatment: 28029327 INFO @ Sat, 08 Sep 2018 15:21:09: #1 total tags in treatment: 28029327 INFO @ Sat, 08 Sep 2018 15:21:09: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:21:09: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:21:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:21:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:21:10: #1 tags after filtering in treatment: 22053031 INFO @ Sat, 08 Sep 2018 15:21:10: #1 tags after filtering in treatment: 22053031 INFO @ Sat, 08 Sep 2018 15:21:10: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 08 Sep 2018 15:21:10: #1 Redundant rate of treatment: 0.21 INFO @ Sat, 08 Sep 2018 15:21:10: #1 finished! INFO @ Sat, 08 Sep 2018 15:21:10: #1 finished! INFO @ Sat, 08 Sep 2018 15:21:10: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:21:10: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:21:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:21:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:21:11: #2 number of paired peaks: 1635 INFO @ Sat, 08 Sep 2018 15:21:11: start model_add_line... INFO @ Sat, 08 Sep 2018 15:21:11: #2 number of paired peaks: 1635 INFO @ Sat, 08 Sep 2018 15:21:11: start model_add_line... INFO @ Sat, 08 Sep 2018 15:21:12: start X-correlation... INFO @ Sat, 08 Sep 2018 15:21:12: end of X-cor INFO @ Sat, 08 Sep 2018 15:21:12: #2 finished! INFO @ Sat, 08 Sep 2018 15:21:12: #2 predicted fragment length is 65 bps INFO @ Sat, 08 Sep 2018 15:21:12: #2 alternative fragment length(s) may be 65 bps INFO @ Sat, 08 Sep 2018 15:21:12: #2.2 Generate R script for model : SRX2659845.10_model.r WARNING @ Sat, 08 Sep 2018 15:21:12: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 15:21:12: #2 You may need to consider one of the other alternative d(s): 65 WARNING @ Sat, 08 Sep 2018 15:21:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 15:21:12: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:21:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:21:12: start X-correlation... INFO @ Sat, 08 Sep 2018 15:21:12: end of X-cor INFO @ Sat, 08 Sep 2018 15:21:12: #2 finished! INFO @ Sat, 08 Sep 2018 15:21:12: #2 predicted fragment length is 65 bps INFO @ Sat, 08 Sep 2018 15:21:12: #2 alternative fragment length(s) may be 65 bps INFO @ Sat, 08 Sep 2018 15:21:12: #2.2 Generate R script for model : SRX2659845.05_model.r WARNING @ Sat, 08 Sep 2018 15:21:12: #2 Since the d (65) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 15:21:12: #2 You may need to consider one of the other alternative d(s): 65 WARNING @ Sat, 08 Sep 2018 15:21:12: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 15:21:12: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:21:12: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:21:44: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:21:57: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:22:00: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:22:10: #4 Write output xls file... SRX2659845.20_peaks.xls INFO @ Sat, 08 Sep 2018 15:22:10: #4 Write peak in narrowPeak format file... SRX2659845.20_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:22:10: #4 Write summits bed file... SRX2659845.20_summits.bed INFO @ Sat, 08 Sep 2018 15:22:10: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (7885 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 15:22:24: #4 Write output xls file... SRX2659845.05_peaks.xls INFO @ Sat, 08 Sep 2018 15:22:24: #4 Write peak in narrowPeak format file... SRX2659845.05_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:22:24: #4 Write summits bed file... SRX2659845.05_summits.bed INFO @ Sat, 08 Sep 2018 15:22:24: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (18845 records, 4 fields): 22 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 15:22:29: #4 Write output xls file... SRX2659845.10_peaks.xls INFO @ Sat, 08 Sep 2018 15:22:29: #4 Write peak in narrowPeak format file... SRX2659845.10_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:22:29: #4 Write summits bed file... SRX2659845.10_summits.bed INFO @ Sat, 08 Sep 2018 15:22:29: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (13961 records, 4 fields): 17 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。