Job ID = 11171262 sra ファイルのダウンロード中... Completed: 2510184K bytes transferred in 61 seconds (335769K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 48268945 spots for /home/okishinya/chipatlas/results/dm3/SRX2659836/SRR5364409.sra Written 48268945 spots for /home/okishinya/chipatlas/results/dm3/SRX2659836/SRR5364409.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:15:31 48268945 reads; of these: 48268945 (100.00%) were paired; of these: 19292850 (39.97%) aligned concordantly 0 times 25316624 (52.45%) aligned concordantly exactly 1 time 3659471 (7.58%) aligned concordantly >1 times ---- 19292850 pairs aligned concordantly 0 times; of these: 2013350 (10.44%) aligned discordantly 1 time ---- 17279500 pairs aligned 0 times concordantly or discordantly; of these: 34559000 mates make up the pairs; of these: 31835402 (92.12%) aligned 0 times 1770755 (5.12%) aligned exactly 1 time 952843 (2.76%) aligned >1 times 67.02% overall alignment rate Time searching: 01:15:31 Overall time: 01:15:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 1560974 / 30467055 = 0.0512 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 15:05:44: # Command line: callpeak -t SRX2659836.bam -f BAM -g dm -n SRX2659836.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2659836.05 # format = BAM # ChIP-seq file = ['SRX2659836.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:05:44: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:05:44: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:05:44: # Command line: callpeak -t SRX2659836.bam -f BAM -g dm -n SRX2659836.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2659836.10 # format = BAM # ChIP-seq file = ['SRX2659836.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:05:44: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:05:44: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:05:44: # Command line: callpeak -t SRX2659836.bam -f BAM -g dm -n SRX2659836.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2659836.20 # format = BAM # ChIP-seq file = ['SRX2659836.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:05:44: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:05:44: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:05:50: 1000000 INFO @ Sat, 08 Sep 2018 15:05:50: 1000000 INFO @ Sat, 08 Sep 2018 15:05:50: 1000000 INFO @ Sat, 08 Sep 2018 15:05:57: 2000000 INFO @ Sat, 08 Sep 2018 15:05:57: 2000000 INFO @ Sat, 08 Sep 2018 15:05:57: 2000000 INFO @ Sat, 08 Sep 2018 15:06:03: 3000000 INFO @ Sat, 08 Sep 2018 15:06:03: 3000000 INFO @ Sat, 08 Sep 2018 15:06:03: 3000000 INFO @ Sat, 08 Sep 2018 15:06:09: 4000000 INFO @ Sat, 08 Sep 2018 15:06:09: 4000000 INFO @ Sat, 08 Sep 2018 15:06:09: 4000000 INFO @ Sat, 08 Sep 2018 15:06:15: 5000000 INFO @ Sat, 08 Sep 2018 15:06:15: 5000000 INFO @ Sat, 08 Sep 2018 15:06:15: 5000000 INFO @ Sat, 08 Sep 2018 15:06:21: 6000000 INFO @ Sat, 08 Sep 2018 15:06:22: 6000000 INFO @ Sat, 08 Sep 2018 15:06:22: 6000000 INFO @ Sat, 08 Sep 2018 15:06:28: 7000000 INFO @ Sat, 08 Sep 2018 15:06:28: 7000000 INFO @ Sat, 08 Sep 2018 15:06:28: 7000000 INFO @ Sat, 08 Sep 2018 15:06:34: 8000000 INFO @ Sat, 08 Sep 2018 15:06:34: 8000000 INFO @ Sat, 08 Sep 2018 15:06:35: 8000000 INFO @ Sat, 08 Sep 2018 15:06:40: 9000000 INFO @ Sat, 08 Sep 2018 15:06:40: 9000000 INFO @ Sat, 08 Sep 2018 15:06:41: 9000000 INFO @ Sat, 08 Sep 2018 15:06:46: 10000000 INFO @ Sat, 08 Sep 2018 15:06:47: 10000000 INFO @ Sat, 08 Sep 2018 15:06:47: 10000000 INFO @ Sat, 08 Sep 2018 15:06:52: 11000000 INFO @ Sat, 08 Sep 2018 15:06:53: 11000000 INFO @ Sat, 08 Sep 2018 15:06:54: 11000000 INFO @ Sat, 08 Sep 2018 15:06:58: 12000000 INFO @ Sat, 08 Sep 2018 15:06:59: 12000000 INFO @ Sat, 08 Sep 2018 15:07:00: 12000000 INFO @ Sat, 08 Sep 2018 15:07:04: 13000000 INFO @ Sat, 08 Sep 2018 15:07:06: 13000000 INFO @ Sat, 08 Sep 2018 15:07:07: 13000000 INFO @ Sat, 08 Sep 2018 15:07:10: 14000000 INFO @ Sat, 08 Sep 2018 15:07:12: 14000000 INFO @ Sat, 08 Sep 2018 15:07:13: 14000000 INFO @ Sat, 08 Sep 2018 15:07:16: 15000000 INFO @ Sat, 08 Sep 2018 15:07:18: 15000000 INFO @ Sat, 08 Sep 2018 15:07:19: 15000000 INFO @ Sat, 08 Sep 2018 15:07:23: 16000000 INFO @ Sat, 08 Sep 2018 15:07:24: 16000000 INFO @ Sat, 08 Sep 2018 15:07:26: 16000000 INFO @ Sat, 08 Sep 2018 15:07:29: 17000000 INFO @ Sat, 08 Sep 2018 15:07:31: 17000000 INFO @ Sat, 08 Sep 2018 15:07:32: 17000000 INFO @ Sat, 08 Sep 2018 15:07:35: 18000000 INFO @ Sat, 08 Sep 2018 15:07:37: 18000000 INFO @ Sat, 08 Sep 2018 15:07:38: 18000000 INFO @ Sat, 08 Sep 2018 15:07:41: 19000000 INFO @ Sat, 08 Sep 2018 15:07:43: 19000000 INFO @ Sat, 08 Sep 2018 15:07:45: 19000000 INFO @ Sat, 08 Sep 2018 15:07:47: 20000000 INFO @ Sat, 08 Sep 2018 15:07:50: 20000000 INFO @ Sat, 08 Sep 2018 15:07:51: 20000000 INFO @ Sat, 08 Sep 2018 15:07:53: 21000000 INFO @ Sat, 08 Sep 2018 15:07:56: 21000000 INFO @ Sat, 08 Sep 2018 15:07:57: 21000000 INFO @ Sat, 08 Sep 2018 15:07:59: 22000000 INFO @ Sat, 08 Sep 2018 15:08:02: 22000000 INFO @ Sat, 08 Sep 2018 15:08:04: 22000000 INFO @ Sat, 08 Sep 2018 15:08:05: 23000000 INFO @ Sat, 08 Sep 2018 15:08:08: 23000000 INFO @ Sat, 08 Sep 2018 15:08:10: 23000000 INFO @ Sat, 08 Sep 2018 15:08:11: 24000000 INFO @ Sat, 08 Sep 2018 15:08:15: 24000000 INFO @ Sat, 08 Sep 2018 15:08:17: 24000000 INFO @ Sat, 08 Sep 2018 15:08:17: 25000000 INFO @ Sat, 08 Sep 2018 15:08:21: 25000000 INFO @ Sat, 08 Sep 2018 15:08:23: 26000000 INFO @ Sat, 08 Sep 2018 15:08:23: 25000000 INFO @ Sat, 08 Sep 2018 15:08:27: 26000000 INFO @ Sat, 08 Sep 2018 15:08:29: 27000000 INFO @ Sat, 08 Sep 2018 15:08:29: 26000000 INFO @ Sat, 08 Sep 2018 15:08:33: 27000000 INFO @ Sat, 08 Sep 2018 15:08:35: 28000000 INFO @ Sat, 08 Sep 2018 15:08:36: 27000000 INFO @ Sat, 08 Sep 2018 15:08:40: 28000000 INFO @ Sat, 08 Sep 2018 15:08:41: 29000000 INFO @ Sat, 08 Sep 2018 15:08:42: 28000000 INFO @ Sat, 08 Sep 2018 15:08:46: 29000000 INFO @ Sat, 08 Sep 2018 15:08:47: 30000000 INFO @ Sat, 08 Sep 2018 15:08:48: 29000000 INFO @ Sat, 08 Sep 2018 15:08:52: 30000000 INFO @ Sat, 08 Sep 2018 15:08:53: 31000000 INFO @ Sat, 08 Sep 2018 15:08:55: 30000000 INFO @ Sat, 08 Sep 2018 15:08:58: 31000000 INFO @ Sat, 08 Sep 2018 15:08:59: 32000000 INFO @ Sat, 08 Sep 2018 15:09:01: 31000000 INFO @ Sat, 08 Sep 2018 15:09:05: 32000000 INFO @ Sat, 08 Sep 2018 15:09:05: 33000000 INFO @ Sat, 08 Sep 2018 15:09:07: 32000000 INFO @ Sat, 08 Sep 2018 15:09:11: 34000000 INFO @ Sat, 08 Sep 2018 15:09:11: 33000000 INFO @ Sat, 08 Sep 2018 15:09:14: 33000000 INFO @ Sat, 08 Sep 2018 15:09:17: 35000000 INFO @ Sat, 08 Sep 2018 15:09:17: 34000000 INFO @ Sat, 08 Sep 2018 15:09:20: 34000000 INFO @ Sat, 08 Sep 2018 15:09:23: 36000000 INFO @ Sat, 08 Sep 2018 15:09:23: 35000000 INFO @ Sat, 08 Sep 2018 15:09:27: 35000000 INFO @ Sat, 08 Sep 2018 15:09:29: 37000000 INFO @ Sat, 08 Sep 2018 15:09:30: 36000000 INFO @ Sat, 08 Sep 2018 15:09:33: 36000000 INFO @ Sat, 08 Sep 2018 15:09:35: 38000000 INFO @ Sat, 08 Sep 2018 15:09:36: 37000000 INFO @ Sat, 08 Sep 2018 15:09:39: 37000000 INFO @ Sat, 08 Sep 2018 15:09:41: 39000000 INFO @ Sat, 08 Sep 2018 15:09:42: 38000000 INFO @ Sat, 08 Sep 2018 15:09:46: 38000000 INFO @ Sat, 08 Sep 2018 15:09:47: 40000000 INFO @ Sat, 08 Sep 2018 15:09:48: 39000000 INFO @ Sat, 08 Sep 2018 15:09:52: 39000000 INFO @ Sat, 08 Sep 2018 15:09:53: 41000000 INFO @ Sat, 08 Sep 2018 15:09:55: 40000000 INFO @ Sat, 08 Sep 2018 15:09:58: 40000000 INFO @ Sat, 08 Sep 2018 15:09:59: 42000000 INFO @ Sat, 08 Sep 2018 15:10:01: 41000000 INFO @ Sat, 08 Sep 2018 15:10:05: 41000000 INFO @ Sat, 08 Sep 2018 15:10:05: 43000000 INFO @ Sat, 08 Sep 2018 15:10:07: 42000000 INFO @ Sat, 08 Sep 2018 15:10:11: 44000000 INFO @ Sat, 08 Sep 2018 15:10:11: 42000000 INFO @ Sat, 08 Sep 2018 15:10:13: 43000000 INFO @ Sat, 08 Sep 2018 15:10:17: 45000000 INFO @ Sat, 08 Sep 2018 15:10:17: 43000000 INFO @ Sat, 08 Sep 2018 15:10:19: 44000000 INFO @ Sat, 08 Sep 2018 15:10:23: 46000000 INFO @ Sat, 08 Sep 2018 15:10:23: 44000000 INFO @ Sat, 08 Sep 2018 15:10:26: 45000000 INFO @ Sat, 08 Sep 2018 15:10:29: 47000000 INFO @ Sat, 08 Sep 2018 15:10:30: 45000000 INFO @ Sat, 08 Sep 2018 15:10:32: 46000000 INFO @ Sat, 08 Sep 2018 15:10:35: 48000000 INFO @ Sat, 08 Sep 2018 15:10:36: 46000000 INFO @ Sat, 08 Sep 2018 15:10:38: 47000000 INFO @ Sat, 08 Sep 2018 15:10:41: 49000000 INFO @ Sat, 08 Sep 2018 15:10:42: 47000000 INFO @ Sat, 08 Sep 2018 15:10:44: 48000000 INFO @ Sat, 08 Sep 2018 15:10:47: 50000000 INFO @ Sat, 08 Sep 2018 15:10:48: 48000000 INFO @ Sat, 08 Sep 2018 15:10:51: 49000000 INFO @ Sat, 08 Sep 2018 15:10:53: 51000000 INFO @ Sat, 08 Sep 2018 15:10:55: 49000000 INFO @ Sat, 08 Sep 2018 15:10:57: 50000000 INFO @ Sat, 08 Sep 2018 15:10:59: 52000000 INFO @ Sat, 08 Sep 2018 15:11:01: 50000000 INFO @ Sat, 08 Sep 2018 15:11:03: 51000000 INFO @ Sat, 08 Sep 2018 15:11:05: 53000000 INFO @ Sat, 08 Sep 2018 15:11:07: 51000000 INFO @ Sat, 08 Sep 2018 15:11:09: 52000000 INFO @ Sat, 08 Sep 2018 15:11:11: 54000000 INFO @ Sat, 08 Sep 2018 15:11:14: 52000000 INFO @ Sat, 08 Sep 2018 15:11:15: 53000000 INFO @ Sat, 08 Sep 2018 15:11:17: 55000000 INFO @ Sat, 08 Sep 2018 15:11:20: 53000000 INFO @ Sat, 08 Sep 2018 15:11:22: 54000000 INFO @ Sat, 08 Sep 2018 15:11:23: 56000000 INFO @ Sat, 08 Sep 2018 15:11:26: 54000000 INFO @ Sat, 08 Sep 2018 15:11:28: 55000000 INFO @ Sat, 08 Sep 2018 15:11:30: 57000000 INFO @ Sat, 08 Sep 2018 15:11:32: 55000000 INFO @ Sat, 08 Sep 2018 15:11:34: 56000000 INFO @ Sat, 08 Sep 2018 15:11:36: 58000000 INFO @ Sat, 08 Sep 2018 15:11:39: 56000000 INFO @ Sat, 08 Sep 2018 15:11:40: 57000000 INFO @ Sat, 08 Sep 2018 15:11:42: 59000000 INFO @ Sat, 08 Sep 2018 15:11:45: 57000000 INFO @ Sat, 08 Sep 2018 15:11:46: 58000000 INFO @ Sat, 08 Sep 2018 15:11:48: 60000000 INFO @ Sat, 08 Sep 2018 15:11:51: 58000000 INFO @ Sat, 08 Sep 2018 15:11:52: 59000000 INFO @ Sat, 08 Sep 2018 15:11:54: 61000000 INFO @ Sat, 08 Sep 2018 15:11:57: 59000000 INFO @ Sat, 08 Sep 2018 15:11:58: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 15:11:58: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 15:11:58: #1 total tags in treatment: 27531682 INFO @ Sat, 08 Sep 2018 15:11:58: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:11:58: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:11:58: #1 tags after filtering in treatment: 22113817 INFO @ Sat, 08 Sep 2018 15:11:58: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 08 Sep 2018 15:11:58: #1 finished! INFO @ Sat, 08 Sep 2018 15:11:58: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:11:58: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:11:59: 60000000 INFO @ Sat, 08 Sep 2018 15:12:00: #2 number of paired peaks: 1320 INFO @ Sat, 08 Sep 2018 15:12:00: start model_add_line... INFO @ Sat, 08 Sep 2018 15:12:00: start X-correlation... INFO @ Sat, 08 Sep 2018 15:12:00: end of X-cor INFO @ Sat, 08 Sep 2018 15:12:00: #2 finished! INFO @ Sat, 08 Sep 2018 15:12:00: #2 predicted fragment length is 74 bps INFO @ Sat, 08 Sep 2018 15:12:00: #2 alternative fragment length(s) may be 74 bps INFO @ Sat, 08 Sep 2018 15:12:00: #2.2 Generate R script for model : SRX2659836.20_model.r WARNING @ Sat, 08 Sep 2018 15:12:00: #2 Since the d (74) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 15:12:00: #2 You may need to consider one of the other alternative d(s): 74 WARNING @ Sat, 08 Sep 2018 15:12:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 15:12:00: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:12:00: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:12:04: 60000000 INFO @ Sat, 08 Sep 2018 15:12:05: 61000000 INFO @ Sat, 08 Sep 2018 15:12:08: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 15:12:08: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 15:12:08: #1 total tags in treatment: 27531682 INFO @ Sat, 08 Sep 2018 15:12:08: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:12:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:12:09: #1 tags after filtering in treatment: 22113817 INFO @ Sat, 08 Sep 2018 15:12:09: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 08 Sep 2018 15:12:09: #1 finished! INFO @ Sat, 08 Sep 2018 15:12:09: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:12:09: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:12:10: 61000000 INFO @ Sat, 08 Sep 2018 15:12:11: #2 number of paired peaks: 1320 INFO @ Sat, 08 Sep 2018 15:12:11: start model_add_line... INFO @ Sat, 08 Sep 2018 15:12:11: start X-correlation... INFO @ Sat, 08 Sep 2018 15:12:11: end of X-cor INFO @ Sat, 08 Sep 2018 15:12:11: #2 finished! INFO @ Sat, 08 Sep 2018 15:12:11: #2 predicted fragment length is 74 bps INFO @ Sat, 08 Sep 2018 15:12:11: #2 alternative fragment length(s) may be 74 bps INFO @ Sat, 08 Sep 2018 15:12:11: #2.2 Generate R script for model : SRX2659836.10_model.r WARNING @ Sat, 08 Sep 2018 15:12:11: #2 Since the d (74) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 15:12:11: #2 You may need to consider one of the other alternative d(s): 74 WARNING @ Sat, 08 Sep 2018 15:12:11: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 15:12:11: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:12:11: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:12:13: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 15:12:13: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 15:12:13: #1 total tags in treatment: 27531682 INFO @ Sat, 08 Sep 2018 15:12:13: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:12:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:12:14: #1 tags after filtering in treatment: 22113817 INFO @ Sat, 08 Sep 2018 15:12:14: #1 Redundant rate of treatment: 0.20 INFO @ Sat, 08 Sep 2018 15:12:14: #1 finished! INFO @ Sat, 08 Sep 2018 15:12:14: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:12:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:12:16: #2 number of paired peaks: 1320 INFO @ Sat, 08 Sep 2018 15:12:16: start model_add_line... INFO @ Sat, 08 Sep 2018 15:12:16: start X-correlation... INFO @ Sat, 08 Sep 2018 15:12:16: end of X-cor INFO @ Sat, 08 Sep 2018 15:12:16: #2 finished! INFO @ Sat, 08 Sep 2018 15:12:16: #2 predicted fragment length is 74 bps INFO @ Sat, 08 Sep 2018 15:12:16: #2 alternative fragment length(s) may be 74 bps INFO @ Sat, 08 Sep 2018 15:12:16: #2.2 Generate R script for model : SRX2659836.05_model.r WARNING @ Sat, 08 Sep 2018 15:12:16: #2 Since the d (74) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 15:12:16: #2 You may need to consider one of the other alternative d(s): 74 WARNING @ Sat, 08 Sep 2018 15:12:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 15:12:16: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:12:16: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:12:46: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:12:58: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:13:03: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:13:12: #4 Write output xls file... SRX2659836.20_peaks.xls INFO @ Sat, 08 Sep 2018 15:13:12: #4 Write peak in narrowPeak format file... SRX2659836.20_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:13:12: #4 Write summits bed file... SRX2659836.20_summits.bed INFO @ Sat, 08 Sep 2018 15:13:12: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (7762 records, 4 fields): 11 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 15:13:23: #4 Write output xls file... SRX2659836.10_peaks.xls INFO @ Sat, 08 Sep 2018 15:13:23: #4 Write peak in narrowPeak format file... SRX2659836.10_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:13:23: #4 Write summits bed file... SRX2659836.10_summits.bed INFO @ Sat, 08 Sep 2018 15:13:24: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (13605 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 15:13:29: #4 Write output xls file... SRX2659836.05_peaks.xls INFO @ Sat, 08 Sep 2018 15:13:29: #4 Write peak in narrowPeak format file... SRX2659836.05_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:13:29: #4 Write summits bed file... SRX2659836.05_summits.bed INFO @ Sat, 08 Sep 2018 15:13:29: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (18321 records, 4 fields): 23 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。