Job ID = 11171243 sra ファイルのダウンロード中... Completed: 3217175K bytes transferred in 87 seconds (299910K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 57558095 spots for /home/okishinya/chipatlas/results/dm3/SRX2659835/SRR5364408.sra Written 57558095 spots for /home/okishinya/chipatlas/results/dm3/SRX2659835/SRR5364408.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:06:37 57558095 reads; of these: 57558095 (100.00%) were paired; of these: 22503187 (39.10%) aligned concordantly 0 times 29158694 (50.66%) aligned concordantly exactly 1 time 5896214 (10.24%) aligned concordantly >1 times ---- 22503187 pairs aligned concordantly 0 times; of these: 2184882 (9.71%) aligned discordantly 1 time ---- 20318305 pairs aligned 0 times concordantly or discordantly; of these: 40636610 mates make up the pairs; of these: 36051558 (88.72%) aligned 0 times 2607346 (6.42%) aligned exactly 1 time 1977706 (4.87%) aligned >1 times 68.68% overall alignment rate Time searching: 02:06:37 Overall time: 02:06:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 3233705 / 36673087 = 0.0882 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 15:54:49: # Command line: callpeak -t SRX2659835.bam -f BAM -g dm -n SRX2659835.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2659835.05 # format = BAM # ChIP-seq file = ['SRX2659835.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:54:49: # Command line: callpeak -t SRX2659835.bam -f BAM -g dm -n SRX2659835.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2659835.20 # format = BAM # ChIP-seq file = ['SRX2659835.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:54:49: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:54:49: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:54:49: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:54:49: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:54:49: # Command line: callpeak -t SRX2659835.bam -f BAM -g dm -n SRX2659835.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2659835.10 # format = BAM # ChIP-seq file = ['SRX2659835.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:54:49: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:54:49: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:54:56: 1000000 INFO @ Sat, 08 Sep 2018 15:54:56: 1000000 INFO @ Sat, 08 Sep 2018 15:54:56: 1000000 INFO @ Sat, 08 Sep 2018 15:55:03: 2000000 INFO @ Sat, 08 Sep 2018 15:55:03: 2000000 INFO @ Sat, 08 Sep 2018 15:55:03: 2000000 INFO @ Sat, 08 Sep 2018 15:55:10: 3000000 INFO @ Sat, 08 Sep 2018 15:55:10: 3000000 INFO @ Sat, 08 Sep 2018 15:55:10: 3000000 INFO @ Sat, 08 Sep 2018 15:55:16: 4000000 INFO @ Sat, 08 Sep 2018 15:55:16: 4000000 INFO @ Sat, 08 Sep 2018 15:55:17: 4000000 INFO @ Sat, 08 Sep 2018 15:55:23: 5000000 INFO @ Sat, 08 Sep 2018 15:55:23: 5000000 INFO @ Sat, 08 Sep 2018 15:55:23: 5000000 INFO @ Sat, 08 Sep 2018 15:55:30: 6000000 INFO @ Sat, 08 Sep 2018 15:55:30: 6000000 INFO @ Sat, 08 Sep 2018 15:55:30: 6000000 INFO @ Sat, 08 Sep 2018 15:55:36: 7000000 INFO @ Sat, 08 Sep 2018 15:55:36: 7000000 INFO @ Sat, 08 Sep 2018 15:55:37: 7000000 INFO @ Sat, 08 Sep 2018 15:55:43: 8000000 INFO @ Sat, 08 Sep 2018 15:55:43: 8000000 INFO @ Sat, 08 Sep 2018 15:55:43: 8000000 INFO @ Sat, 08 Sep 2018 15:55:49: 9000000 INFO @ Sat, 08 Sep 2018 15:55:50: 9000000 INFO @ Sat, 08 Sep 2018 15:55:50: 9000000 INFO @ Sat, 08 Sep 2018 15:55:56: 10000000 INFO @ Sat, 08 Sep 2018 15:55:56: 10000000 INFO @ Sat, 08 Sep 2018 15:55:57: 10000000 INFO @ Sat, 08 Sep 2018 15:56:02: 11000000 INFO @ Sat, 08 Sep 2018 15:56:03: 11000000 INFO @ Sat, 08 Sep 2018 15:56:04: 11000000 INFO @ Sat, 08 Sep 2018 15:56:09: 12000000 INFO @ Sat, 08 Sep 2018 15:56:10: 12000000 INFO @ Sat, 08 Sep 2018 15:56:11: 12000000 INFO @ Sat, 08 Sep 2018 15:56:15: 13000000 INFO @ Sat, 08 Sep 2018 15:56:17: 13000000 INFO @ Sat, 08 Sep 2018 15:56:18: 13000000 INFO @ Sat, 08 Sep 2018 15:56:22: 14000000 INFO @ Sat, 08 Sep 2018 15:56:23: 14000000 INFO @ Sat, 08 Sep 2018 15:56:25: 14000000 INFO @ Sat, 08 Sep 2018 15:56:28: 15000000 INFO @ Sat, 08 Sep 2018 15:56:30: 15000000 INFO @ Sat, 08 Sep 2018 15:56:32: 15000000 INFO @ Sat, 08 Sep 2018 15:56:35: 16000000 INFO @ Sat, 08 Sep 2018 15:56:37: 16000000 INFO @ Sat, 08 Sep 2018 15:56:38: 16000000 INFO @ Sat, 08 Sep 2018 15:56:42: 17000000 INFO @ Sat, 08 Sep 2018 15:56:44: 17000000 INFO @ Sat, 08 Sep 2018 15:56:45: 17000000 INFO @ Sat, 08 Sep 2018 15:56:49: 18000000 INFO @ Sat, 08 Sep 2018 15:56:51: 18000000 INFO @ Sat, 08 Sep 2018 15:56:51: 18000000 INFO @ Sat, 08 Sep 2018 15:56:56: 19000000 INFO @ Sat, 08 Sep 2018 15:56:58: 19000000 INFO @ Sat, 08 Sep 2018 15:56:58: 19000000 INFO @ Sat, 08 Sep 2018 15:57:03: 20000000 INFO @ Sat, 08 Sep 2018 15:57:04: 20000000 INFO @ Sat, 08 Sep 2018 15:57:05: 20000000 INFO @ Sat, 08 Sep 2018 15:57:10: 21000000 INFO @ Sat, 08 Sep 2018 15:57:11: 21000000 INFO @ Sat, 08 Sep 2018 15:57:12: 21000000 INFO @ Sat, 08 Sep 2018 15:57:17: 22000000 INFO @ Sat, 08 Sep 2018 15:57:17: 22000000 INFO @ Sat, 08 Sep 2018 15:57:19: 22000000 INFO @ Sat, 08 Sep 2018 15:57:24: 23000000 INFO @ Sat, 08 Sep 2018 15:57:24: 23000000 INFO @ Sat, 08 Sep 2018 15:57:26: 23000000 INFO @ Sat, 08 Sep 2018 15:57:31: 24000000 INFO @ Sat, 08 Sep 2018 15:57:31: 24000000 INFO @ Sat, 08 Sep 2018 15:57:33: 24000000 INFO @ Sat, 08 Sep 2018 15:57:37: 25000000 INFO @ Sat, 08 Sep 2018 15:57:38: 25000000 INFO @ Sat, 08 Sep 2018 15:57:40: 25000000 INFO @ Sat, 08 Sep 2018 15:57:44: 26000000 INFO @ Sat, 08 Sep 2018 15:57:45: 26000000 INFO @ Sat, 08 Sep 2018 15:57:47: 26000000 INFO @ Sat, 08 Sep 2018 15:57:50: 27000000 INFO @ Sat, 08 Sep 2018 15:57:52: 27000000 INFO @ Sat, 08 Sep 2018 15:57:54: 27000000 INFO @ Sat, 08 Sep 2018 15:57:57: 28000000 INFO @ Sat, 08 Sep 2018 15:57:59: 28000000 INFO @ Sat, 08 Sep 2018 15:58:01: 28000000 INFO @ Sat, 08 Sep 2018 15:58:03: 29000000 INFO @ Sat, 08 Sep 2018 15:58:06: 29000000 INFO @ Sat, 08 Sep 2018 15:58:08: 29000000 INFO @ Sat, 08 Sep 2018 15:58:10: 30000000 INFO @ Sat, 08 Sep 2018 15:58:12: 30000000 INFO @ Sat, 08 Sep 2018 15:58:15: 30000000 INFO @ Sat, 08 Sep 2018 15:58:17: 31000000 INFO @ Sat, 08 Sep 2018 15:58:18: 31000000 INFO @ Sat, 08 Sep 2018 15:58:21: 31000000 INFO @ Sat, 08 Sep 2018 15:58:24: 32000000 INFO @ Sat, 08 Sep 2018 15:58:25: 32000000 INFO @ Sat, 08 Sep 2018 15:58:28: 32000000 INFO @ Sat, 08 Sep 2018 15:58:31: 33000000 INFO @ Sat, 08 Sep 2018 15:58:31: 33000000 INFO @ Sat, 08 Sep 2018 15:58:35: 33000000 INFO @ Sat, 08 Sep 2018 15:58:38: 34000000 INFO @ Sat, 08 Sep 2018 15:58:38: 34000000 INFO @ Sat, 08 Sep 2018 15:58:42: 34000000 INFO @ Sat, 08 Sep 2018 15:58:44: 35000000 INFO @ Sat, 08 Sep 2018 15:58:45: 35000000 INFO @ Sat, 08 Sep 2018 15:58:48: 35000000 INFO @ Sat, 08 Sep 2018 15:58:51: 36000000 INFO @ Sat, 08 Sep 2018 15:58:52: 36000000 INFO @ Sat, 08 Sep 2018 15:58:55: 36000000 INFO @ Sat, 08 Sep 2018 15:58:57: 37000000 INFO @ Sat, 08 Sep 2018 15:58:58: 37000000 INFO @ Sat, 08 Sep 2018 15:59:02: 37000000 INFO @ Sat, 08 Sep 2018 15:59:04: 38000000 INFO @ Sat, 08 Sep 2018 15:59:05: 38000000 INFO @ Sat, 08 Sep 2018 15:59:08: 38000000 INFO @ Sat, 08 Sep 2018 15:59:10: 39000000 INFO @ Sat, 08 Sep 2018 15:59:12: 39000000 INFO @ Sat, 08 Sep 2018 15:59:15: 39000000 INFO @ Sat, 08 Sep 2018 15:59:16: 40000000 INFO @ Sat, 08 Sep 2018 15:59:19: 40000000 INFO @ Sat, 08 Sep 2018 15:59:22: 40000000 INFO @ Sat, 08 Sep 2018 15:59:23: 41000000 INFO @ Sat, 08 Sep 2018 15:59:26: 41000000 INFO @ Sat, 08 Sep 2018 15:59:28: 41000000 INFO @ Sat, 08 Sep 2018 15:59:29: 42000000 INFO @ Sat, 08 Sep 2018 15:59:33: 42000000 INFO @ Sat, 08 Sep 2018 15:59:35: 42000000 INFO @ Sat, 08 Sep 2018 15:59:36: 43000000 INFO @ Sat, 08 Sep 2018 15:59:40: 43000000 INFO @ Sat, 08 Sep 2018 15:59:42: 43000000 INFO @ Sat, 08 Sep 2018 15:59:42: 44000000 INFO @ Sat, 08 Sep 2018 15:59:46: 44000000 INFO @ Sat, 08 Sep 2018 15:59:49: 44000000 INFO @ Sat, 08 Sep 2018 15:59:49: 45000000 INFO @ Sat, 08 Sep 2018 15:59:53: 45000000 INFO @ Sat, 08 Sep 2018 15:59:55: 46000000 INFO @ Sat, 08 Sep 2018 15:59:55: 45000000 INFO @ Sat, 08 Sep 2018 16:00:00: 46000000 INFO @ Sat, 08 Sep 2018 16:00:01: 47000000 INFO @ Sat, 08 Sep 2018 16:00:02: 46000000 INFO @ Sat, 08 Sep 2018 16:00:07: 47000000 INFO @ Sat, 08 Sep 2018 16:00:08: 48000000 INFO @ Sat, 08 Sep 2018 16:00:09: 47000000 INFO @ Sat, 08 Sep 2018 16:00:14: 48000000 INFO @ Sat, 08 Sep 2018 16:00:14: 49000000 INFO @ Sat, 08 Sep 2018 16:00:15: 48000000 INFO @ Sat, 08 Sep 2018 16:00:21: 49000000 INFO @ Sat, 08 Sep 2018 16:00:21: 50000000 INFO @ Sat, 08 Sep 2018 16:00:22: 49000000 INFO @ Sat, 08 Sep 2018 16:00:27: 51000000 INFO @ Sat, 08 Sep 2018 16:00:28: 50000000 INFO @ Sat, 08 Sep 2018 16:00:29: 50000000 INFO @ Sat, 08 Sep 2018 16:00:34: 52000000 INFO @ Sat, 08 Sep 2018 16:00:34: 51000000 INFO @ Sat, 08 Sep 2018 16:00:35: 51000000 INFO @ Sat, 08 Sep 2018 16:00:40: 53000000 INFO @ Sat, 08 Sep 2018 16:00:41: 52000000 INFO @ Sat, 08 Sep 2018 16:00:42: 52000000 INFO @ Sat, 08 Sep 2018 16:00:47: 54000000 INFO @ Sat, 08 Sep 2018 16:00:48: 53000000 INFO @ Sat, 08 Sep 2018 16:00:49: 53000000 INFO @ Sat, 08 Sep 2018 16:00:54: 55000000 INFO @ Sat, 08 Sep 2018 16:00:55: 54000000 INFO @ Sat, 08 Sep 2018 16:00:56: 54000000 INFO @ Sat, 08 Sep 2018 16:01:01: 56000000 INFO @ Sat, 08 Sep 2018 16:01:01: 55000000 INFO @ Sat, 08 Sep 2018 16:01:03: 55000000 INFO @ Sat, 08 Sep 2018 16:01:07: 57000000 INFO @ Sat, 08 Sep 2018 16:01:08: 56000000 INFO @ Sat, 08 Sep 2018 16:01:10: 56000000 INFO @ Sat, 08 Sep 2018 16:01:14: 57000000 INFO @ Sat, 08 Sep 2018 16:01:14: 58000000 INFO @ Sat, 08 Sep 2018 16:01:17: 57000000 INFO @ Sat, 08 Sep 2018 16:01:21: 58000000 INFO @ Sat, 08 Sep 2018 16:01:22: 59000000 INFO @ Sat, 08 Sep 2018 16:01:24: 58000000 INFO @ Sat, 08 Sep 2018 16:01:28: 59000000 INFO @ Sat, 08 Sep 2018 16:01:28: 60000000 INFO @ Sat, 08 Sep 2018 16:01:31: 59000000 INFO @ Sat, 08 Sep 2018 16:01:35: 60000000 INFO @ Sat, 08 Sep 2018 16:01:35: 61000000 INFO @ Sat, 08 Sep 2018 16:01:38: 60000000 INFO @ Sat, 08 Sep 2018 16:01:42: 62000000 INFO @ Sat, 08 Sep 2018 16:01:42: 61000000 INFO @ Sat, 08 Sep 2018 16:01:45: 61000000 INFO @ Sat, 08 Sep 2018 16:01:48: 63000000 INFO @ Sat, 08 Sep 2018 16:01:49: 62000000 INFO @ Sat, 08 Sep 2018 16:01:52: 62000000 INFO @ Sat, 08 Sep 2018 16:01:54: 64000000 INFO @ Sat, 08 Sep 2018 16:01:56: 63000000 INFO @ Sat, 08 Sep 2018 16:01:58: 63000000 INFO @ Sat, 08 Sep 2018 16:02:01: 65000000 INFO @ Sat, 08 Sep 2018 16:02:03: 64000000 INFO @ Sat, 08 Sep 2018 16:02:05: 64000000 INFO @ Sat, 08 Sep 2018 16:02:07: 66000000 INFO @ Sat, 08 Sep 2018 16:02:10: 65000000 INFO @ Sat, 08 Sep 2018 16:02:12: 65000000 INFO @ Sat, 08 Sep 2018 16:02:14: 67000000 INFO @ Sat, 08 Sep 2018 16:02:17: 66000000 INFO @ Sat, 08 Sep 2018 16:02:19: 66000000 INFO @ Sat, 08 Sep 2018 16:02:20: 68000000 INFO @ Sat, 08 Sep 2018 16:02:25: 67000000 INFO @ Sat, 08 Sep 2018 16:02:27: 67000000 INFO @ Sat, 08 Sep 2018 16:02:27: 69000000 INFO @ Sat, 08 Sep 2018 16:02:32: 68000000 INFO @ Sat, 08 Sep 2018 16:02:33: 70000000 INFO @ Sat, 08 Sep 2018 16:02:34: 68000000 INFO @ Sat, 08 Sep 2018 16:02:39: 69000000 INFO @ Sat, 08 Sep 2018 16:02:40: 71000000 INFO @ Sat, 08 Sep 2018 16:02:41: 69000000 INFO @ Sat, 08 Sep 2018 16:02:46: 70000000 INFO @ Sat, 08 Sep 2018 16:02:46: 72000000 INFO @ Sat, 08 Sep 2018 16:02:48: 70000000 INFO @ Sat, 08 Sep 2018 16:02:51: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 16:02:51: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 16:02:51: #1 total tags in treatment: 32014554 INFO @ Sat, 08 Sep 2018 16:02:51: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 16:02:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 16:02:52: #1 tags after filtering in treatment: 26230844 INFO @ Sat, 08 Sep 2018 16:02:52: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 08 Sep 2018 16:02:52: #1 finished! INFO @ Sat, 08 Sep 2018 16:02:52: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 16:02:52: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 16:02:53: 71000000 INFO @ Sat, 08 Sep 2018 16:02:53: #2 number of paired peaks: 502 WARNING @ Sat, 08 Sep 2018 16:02:53: Fewer paired peaks (502) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 502 pairs to build model! INFO @ Sat, 08 Sep 2018 16:02:53: start model_add_line... INFO @ Sat, 08 Sep 2018 16:02:54: start X-correlation... INFO @ Sat, 08 Sep 2018 16:02:54: end of X-cor INFO @ Sat, 08 Sep 2018 16:02:54: #2 finished! INFO @ Sat, 08 Sep 2018 16:02:54: #2 predicted fragment length is 47 bps INFO @ Sat, 08 Sep 2018 16:02:54: #2 alternative fragment length(s) may be 4,47 bps INFO @ Sat, 08 Sep 2018 16:02:54: #2.2 Generate R script for model : SRX2659835.05_model.r WARNING @ Sat, 08 Sep 2018 16:02:54: #2 Since the d (47) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 16:02:54: #2 You may need to consider one of the other alternative d(s): 4,47 WARNING @ Sat, 08 Sep 2018 16:02:54: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 16:02:54: #3 Call peaks... INFO @ Sat, 08 Sep 2018 16:02:54: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 16:02:54: 71000000 INFO @ Sat, 08 Sep 2018 16:03:00: 72000000 INFO @ Sat, 08 Sep 2018 16:03:01: 72000000 INFO @ Sat, 08 Sep 2018 16:03:04: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 16:03:04: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 16:03:04: #1 total tags in treatment: 32014554 INFO @ Sat, 08 Sep 2018 16:03:04: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 16:03:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 16:03:05: #1 tags after filtering in treatment: 26230844 INFO @ Sat, 08 Sep 2018 16:03:05: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 08 Sep 2018 16:03:05: #1 finished! INFO @ Sat, 08 Sep 2018 16:03:05: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 16:03:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 16:03:05: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 16:03:05: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 16:03:05: #1 total tags in treatment: 32014554 INFO @ Sat, 08 Sep 2018 16:03:05: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 16:03:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 16:03:06: #1 tags after filtering in treatment: 26230844 INFO @ Sat, 08 Sep 2018 16:03:06: #1 Redundant rate of treatment: 0.18 INFO @ Sat, 08 Sep 2018 16:03:06: #1 finished! INFO @ Sat, 08 Sep 2018 16:03:06: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 16:03:06: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 16:03:06: #2 number of paired peaks: 502 WARNING @ Sat, 08 Sep 2018 16:03:06: Fewer paired peaks (502) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 502 pairs to build model! INFO @ Sat, 08 Sep 2018 16:03:06: start model_add_line... INFO @ Sat, 08 Sep 2018 16:03:07: start X-correlation... INFO @ Sat, 08 Sep 2018 16:03:07: end of X-cor INFO @ Sat, 08 Sep 2018 16:03:07: #2 finished! INFO @ Sat, 08 Sep 2018 16:03:07: #2 predicted fragment length is 47 bps INFO @ Sat, 08 Sep 2018 16:03:07: #2 alternative fragment length(s) may be 4,47 bps INFO @ Sat, 08 Sep 2018 16:03:07: #2.2 Generate R script for model : SRX2659835.10_model.r WARNING @ Sat, 08 Sep 2018 16:03:07: #2 Since the d (47) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 16:03:07: #2 You may need to consider one of the other alternative d(s): 4,47 WARNING @ Sat, 08 Sep 2018 16:03:07: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 16:03:07: #3 Call peaks... INFO @ Sat, 08 Sep 2018 16:03:07: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 16:03:08: #2 number of paired peaks: 502 WARNING @ Sat, 08 Sep 2018 16:03:08: Fewer paired peaks (502) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 502 pairs to build model! INFO @ Sat, 08 Sep 2018 16:03:08: start model_add_line... INFO @ Sat, 08 Sep 2018 16:03:08: start X-correlation... INFO @ Sat, 08 Sep 2018 16:03:08: end of X-cor INFO @ Sat, 08 Sep 2018 16:03:08: #2 finished! INFO @ Sat, 08 Sep 2018 16:03:08: #2 predicted fragment length is 47 bps INFO @ Sat, 08 Sep 2018 16:03:08: #2 alternative fragment length(s) may be 4,47 bps INFO @ Sat, 08 Sep 2018 16:03:08: #2.2 Generate R script for model : SRX2659835.20_model.r WARNING @ Sat, 08 Sep 2018 16:03:08: #2 Since the d (47) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Sat, 08 Sep 2018 16:03:08: #2 You may need to consider one of the other alternative d(s): 4,47 WARNING @ Sat, 08 Sep 2018 16:03:08: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Sat, 08 Sep 2018 16:03:08: #3 Call peaks... INFO @ Sat, 08 Sep 2018 16:03:08: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 16:03:42: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 16:03:56: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 16:03:59: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 16:04:08: #4 Write output xls file... SRX2659835.05_peaks.xls INFO @ Sat, 08 Sep 2018 16:04:09: #4 Write peak in narrowPeak format file... SRX2659835.05_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 16:04:09: #4 Write summits bed file... SRX2659835.05_summits.bed INFO @ Sat, 08 Sep 2018 16:04:09: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (16768 records, 4 fields): 21 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 16:04:21: #4 Write output xls file... SRX2659835.10_peaks.xls INFO @ Sat, 08 Sep 2018 16:04:21: #4 Write peak in narrowPeak format file... SRX2659835.10_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 16:04:21: #4 Write summits bed file... SRX2659835.10_summits.bed INFO @ Sat, 08 Sep 2018 16:04:22: Done! pass1 - making usageList (14 chroms): 3 millis pass2 - checking and writing primary data (10922 records, 4 fields): 13 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 16:04:26: #4 Write output xls file... SRX2659835.20_peaks.xls INFO @ Sat, 08 Sep 2018 16:04:26: #4 Write peak in narrowPeak format file... SRX2659835.20_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 16:04:27: #4 Write summits bed file... SRX2659835.20_summits.bed INFO @ Sat, 08 Sep 2018 16:04:27: Done! pass1 - making usageList (13 chroms): 13 millis pass2 - checking and writing primary data (4501 records, 4 fields): 7 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。