Job ID = 1294344 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-06-02T21:36:51 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:38:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:39:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:39:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:39:21 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:55:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) 2019-06-02T21:55:14 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 34,097,701 reads read : 68,195,402 reads written : 68,195,402 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘fastqDump_tmp*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:59:02 34097701 reads; of these: 34097701 (100.00%) were paired; of these: 3638947 (10.67%) aligned concordantly 0 times 25724788 (75.44%) aligned concordantly exactly 1 time 4733966 (13.88%) aligned concordantly >1 times ---- 3638947 pairs aligned concordantly 0 times; of these: 853124 (23.44%) aligned discordantly 1 time ---- 2785823 pairs aligned 0 times concordantly or discordantly; of these: 5571646 mates make up the pairs; of these: 3049017 (54.72%) aligned 0 times 1557756 (27.96%) aligned exactly 1 time 964873 (17.32%) aligned >1 times 95.53% overall alignment rate Time searching: 00:59:02 Overall time: 00:59:02 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 2121707 / 31195037 = 0.0680 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 03 Jun 2019 08:32:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 08:32:10: #1 read tag files... INFO @ Mon, 03 Jun 2019 08:32:10: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 08:32:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 08:32:10: #1 read tag files... INFO @ Mon, 03 Jun 2019 08:32:10: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 08:32:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 03 Jun 2019 08:32:10: #1 read tag files... INFO @ Mon, 03 Jun 2019 08:32:10: #1 read treatment tags... INFO @ Mon, 03 Jun 2019 08:32:18: 1000000 INFO @ Mon, 03 Jun 2019 08:32:18: 1000000 INFO @ Mon, 03 Jun 2019 08:32:19: 1000000 INFO @ Mon, 03 Jun 2019 08:32:25: 2000000 INFO @ Mon, 03 Jun 2019 08:32:26: 2000000 INFO @ Mon, 03 Jun 2019 08:32:27: 2000000 INFO @ Mon, 03 Jun 2019 08:32:33: 3000000 INFO @ Mon, 03 Jun 2019 08:32:35: 3000000 INFO @ Mon, 03 Jun 2019 08:32:35: 3000000 INFO @ Mon, 03 Jun 2019 08:32:41: 4000000 INFO @ Mon, 03 Jun 2019 08:32:44: 4000000 INFO @ Mon, 03 Jun 2019 08:32:44: 4000000 INFO @ Mon, 03 Jun 2019 08:32:48: 5000000 INFO @ Mon, 03 Jun 2019 08:32:52: 5000000 INFO @ Mon, 03 Jun 2019 08:32:53: 5000000 INFO @ Mon, 03 Jun 2019 08:32:56: 6000000 INFO @ Mon, 03 Jun 2019 08:33:01: 6000000 INFO @ Mon, 03 Jun 2019 08:33:01: 6000000 INFO @ Mon, 03 Jun 2019 08:33:04: 7000000 INFO @ Mon, 03 Jun 2019 08:33:09: 7000000 INFO @ Mon, 03 Jun 2019 08:33:10: 7000000 INFO @ Mon, 03 Jun 2019 08:33:11: 8000000 INFO @ Mon, 03 Jun 2019 08:33:17: 8000000 INFO @ Mon, 03 Jun 2019 08:33:18: 8000000 INFO @ Mon, 03 Jun 2019 08:33:19: 9000000 INFO @ Mon, 03 Jun 2019 08:33:25: 9000000 INFO @ Mon, 03 Jun 2019 08:33:26: 10000000 INFO @ Mon, 03 Jun 2019 08:33:27: 9000000 INFO @ Mon, 03 Jun 2019 08:33:33: 10000000 INFO @ Mon, 03 Jun 2019 08:33:34: 11000000 INFO @ Mon, 03 Jun 2019 08:33:35: 10000000 INFO @ Mon, 03 Jun 2019 08:33:41: 12000000 INFO @ Mon, 03 Jun 2019 08:33:41: 11000000 INFO @ Mon, 03 Jun 2019 08:33:43: 11000000 INFO @ Mon, 03 Jun 2019 08:33:49: 13000000 INFO @ Mon, 03 Jun 2019 08:33:49: 12000000 INFO @ Mon, 03 Jun 2019 08:33:51: 12000000 INFO @ Mon, 03 Jun 2019 08:33:56: 14000000 INFO @ Mon, 03 Jun 2019 08:33:57: 13000000 INFO @ Mon, 03 Jun 2019 08:34:00: 13000000 INFO @ Mon, 03 Jun 2019 08:34:04: 15000000 INFO @ Mon, 03 Jun 2019 08:34:05: 14000000 INFO @ Mon, 03 Jun 2019 08:34:08: 14000000 INFO @ Mon, 03 Jun 2019 08:34:11: 16000000 INFO @ Mon, 03 Jun 2019 08:34:13: 15000000 INFO @ Mon, 03 Jun 2019 08:34:16: 15000000 INFO @ Mon, 03 Jun 2019 08:34:19: 17000000 INFO @ Mon, 03 Jun 2019 08:34:21: 16000000 INFO @ Mon, 03 Jun 2019 08:34:24: 16000000 INFO @ Mon, 03 Jun 2019 08:34:27: 18000000 INFO @ Mon, 03 Jun 2019 08:34:29: 17000000 INFO @ Mon, 03 Jun 2019 08:34:32: 17000000 INFO @ Mon, 03 Jun 2019 08:34:34: 19000000 INFO @ Mon, 03 Jun 2019 08:34:37: 18000000 INFO @ Mon, 03 Jun 2019 08:34:40: 18000000 INFO @ Mon, 03 Jun 2019 08:34:42: 20000000 INFO @ Mon, 03 Jun 2019 08:34:45: 19000000 INFO @ Mon, 03 Jun 2019 08:34:48: 19000000 INFO @ Mon, 03 Jun 2019 08:34:49: 21000000 INFO @ Mon, 03 Jun 2019 08:34:52: 20000000 INFO @ Mon, 03 Jun 2019 08:34:56: 22000000 INFO @ Mon, 03 Jun 2019 08:34:57: 20000000 INFO @ Mon, 03 Jun 2019 08:35:00: 21000000 INFO @ Mon, 03 Jun 2019 08:35:04: 23000000 INFO @ Mon, 03 Jun 2019 08:35:05: 21000000 INFO @ Mon, 03 Jun 2019 08:35:09: 22000000 INFO @ Mon, 03 Jun 2019 08:35:11: 24000000 INFO @ Mon, 03 Jun 2019 08:35:13: 22000000 INFO @ Mon, 03 Jun 2019 08:35:17: 23000000 INFO @ Mon, 03 Jun 2019 08:35:19: 25000000 INFO @ Mon, 03 Jun 2019 08:35:21: 23000000 INFO @ Mon, 03 Jun 2019 08:35:25: 24000000 INFO @ Mon, 03 Jun 2019 08:35:27: 26000000 INFO @ Mon, 03 Jun 2019 08:35:29: 24000000 INFO @ Mon, 03 Jun 2019 08:35:33: 25000000 INFO @ Mon, 03 Jun 2019 08:35:35: 27000000 INFO @ Mon, 03 Jun 2019 08:35:38: 25000000 INFO @ Mon, 03 Jun 2019 08:35:41: 26000000 INFO @ Mon, 03 Jun 2019 08:35:43: 28000000 INFO @ Mon, 03 Jun 2019 08:35:45: 26000000 INFO @ Mon, 03 Jun 2019 08:35:50: 29000000 INFO @ Mon, 03 Jun 2019 08:35:50: 27000000 INFO @ Mon, 03 Jun 2019 08:35:53: 27000000 INFO @ Mon, 03 Jun 2019 08:35:57: 30000000 INFO @ Mon, 03 Jun 2019 08:35:58: 28000000 INFO @ Mon, 03 Jun 2019 08:36:01: 28000000 INFO @ Mon, 03 Jun 2019 08:36:05: 31000000 INFO @ Mon, 03 Jun 2019 08:36:06: 29000000 INFO @ Mon, 03 Jun 2019 08:36:09: 29000000 INFO @ Mon, 03 Jun 2019 08:36:12: 32000000 INFO @ Mon, 03 Jun 2019 08:36:13: 30000000 INFO @ Mon, 03 Jun 2019 08:36:17: 30000000 INFO @ Mon, 03 Jun 2019 08:36:20: 33000000 INFO @ Mon, 03 Jun 2019 08:36:21: 31000000 INFO @ Mon, 03 Jun 2019 08:36:25: 31000000 INFO @ Mon, 03 Jun 2019 08:36:27: 34000000 INFO @ Mon, 03 Jun 2019 08:36:30: 32000000 INFO @ Mon, 03 Jun 2019 08:36:34: 32000000 INFO @ Mon, 03 Jun 2019 08:36:35: 35000000 INFO @ Mon, 03 Jun 2019 08:36:38: 33000000 INFO @ Mon, 03 Jun 2019 08:36:42: 33000000 INFO @ Mon, 03 Jun 2019 08:36:42: 36000000 INFO @ Mon, 03 Jun 2019 08:36:46: 34000000 INFO @ Mon, 03 Jun 2019 08:36:50: 37000000 INFO @ Mon, 03 Jun 2019 08:36:50: 34000000 INFO @ Mon, 03 Jun 2019 08:36:54: 35000000 INFO @ Mon, 03 Jun 2019 08:36:57: 38000000 INFO @ Mon, 03 Jun 2019 08:36:58: 35000000 INFO @ Mon, 03 Jun 2019 08:37:02: 36000000 INFO @ Mon, 03 Jun 2019 08:37:06: 39000000 INFO @ Mon, 03 Jun 2019 08:37:06: 36000000 INFO @ Mon, 03 Jun 2019 08:37:09: 37000000 INFO @ Mon, 03 Jun 2019 08:37:14: 37000000 INFO @ Mon, 03 Jun 2019 08:37:14: 40000000 INFO @ Mon, 03 Jun 2019 08:37:17: 38000000 INFO @ Mon, 03 Jun 2019 08:37:22: 38000000 INFO @ Mon, 03 Jun 2019 08:37:22: 41000000 INFO @ Mon, 03 Jun 2019 08:37:26: 39000000 INFO @ Mon, 03 Jun 2019 08:37:28: 39000000 INFO @ Mon, 03 Jun 2019 08:37:30: 42000000 INFO @ Mon, 03 Jun 2019 08:37:35: 40000000 INFO @ Mon, 03 Jun 2019 08:37:35: 40000000 INFO @ Mon, 03 Jun 2019 08:37:38: 43000000 INFO @ Mon, 03 Jun 2019 08:37:42: 41000000 INFO @ Mon, 03 Jun 2019 08:37:44: 41000000 INFO @ Mon, 03 Jun 2019 08:37:46: 44000000 INFO @ Mon, 03 Jun 2019 08:37:48: 42000000 INFO @ Mon, 03 Jun 2019 08:37:54: 42000000 INFO @ Mon, 03 Jun 2019 08:37:54: 45000000 INFO @ Mon, 03 Jun 2019 08:37:55: 43000000 INFO @ Mon, 03 Jun 2019 08:38:01: 44000000 INFO @ Mon, 03 Jun 2019 08:38:03: 46000000 INFO @ Mon, 03 Jun 2019 08:38:03: 43000000 INFO @ Mon, 03 Jun 2019 08:38:08: 45000000 INFO @ Mon, 03 Jun 2019 08:38:11: 47000000 INFO @ Mon, 03 Jun 2019 08:38:12: 44000000 INFO @ Mon, 03 Jun 2019 08:38:15: 46000000 INFO @ Mon, 03 Jun 2019 08:38:19: 48000000 INFO @ Mon, 03 Jun 2019 08:38:21: 45000000 INFO @ Mon, 03 Jun 2019 08:38:21: 47000000 INFO @ Mon, 03 Jun 2019 08:38:28: 49000000 INFO @ Mon, 03 Jun 2019 08:38:28: 48000000 INFO @ Mon, 03 Jun 2019 08:38:30: 46000000 INFO @ Mon, 03 Jun 2019 08:38:35: 49000000 INFO @ Mon, 03 Jun 2019 08:38:36: 50000000 INFO @ Mon, 03 Jun 2019 08:38:39: 47000000 INFO @ Mon, 03 Jun 2019 08:38:41: 50000000 INFO @ Mon, 03 Jun 2019 08:38:44: 51000000 INFO @ Mon, 03 Jun 2019 08:38:48: 51000000 INFO @ Mon, 03 Jun 2019 08:38:48: 48000000 INFO @ Mon, 03 Jun 2019 08:38:52: 52000000 INFO @ Mon, 03 Jun 2019 08:38:54: 52000000 INFO @ Mon, 03 Jun 2019 08:38:57: 49000000 INFO @ Mon, 03 Jun 2019 08:39:01: 53000000 INFO @ Mon, 03 Jun 2019 08:39:01: 53000000 INFO @ Mon, 03 Jun 2019 08:39:05: 50000000 INFO @ Mon, 03 Jun 2019 08:39:08: 54000000 INFO @ Mon, 03 Jun 2019 08:39:09: 54000000 INFO @ Mon, 03 Jun 2019 08:39:14: 55000000 INFO @ Mon, 03 Jun 2019 08:39:15: 51000000 INFO @ Mon, 03 Jun 2019 08:39:17: 55000000 INFO @ Mon, 03 Jun 2019 08:39:21: 56000000 INFO @ Mon, 03 Jun 2019 08:39:24: 52000000 INFO @ Mon, 03 Jun 2019 08:39:25: 56000000 INFO @ Mon, 03 Jun 2019 08:39:27: 57000000 INFO @ Mon, 03 Jun 2019 08:39:33: 53000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Mon, 03 Jun 2019 08:39:34: 57000000 INFO @ Mon, 03 Jun 2019 08:39:34: 58000000 INFO @ Mon, 03 Jun 2019 08:39:40: 59000000 INFO @ Mon, 03 Jun 2019 08:39:42: 58000000 INFO @ Mon, 03 Jun 2019 08:39:42: 54000000 INFO @ Mon, 03 Jun 2019 08:39:47: 60000000 INFO @ Mon, 03 Jun 2019 08:39:50: 59000000 INFO @ Mon, 03 Jun 2019 08:39:51: 55000000 INFO @ Mon, 03 Jun 2019 08:39:53: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 08:39:53: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 08:39:53: #1 total tags in treatment: 28362648 INFO @ Mon, 03 Jun 2019 08:39:53: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 08:39:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 08:39:54: #1 tags after filtering in treatment: 17041034 INFO @ Mon, 03 Jun 2019 08:39:54: #1 Redundant rate of treatment: 0.40 INFO @ Mon, 03 Jun 2019 08:39:54: #1 finished! INFO @ Mon, 03 Jun 2019 08:39:54: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 08:39:54: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 08:39:58: #2 number of paired peaks: 15211 INFO @ Mon, 03 Jun 2019 08:39:58: start model_add_line... INFO @ Mon, 03 Jun 2019 08:39:58: start X-correlation... INFO @ Mon, 03 Jun 2019 08:39:58: end of X-cor INFO @ Mon, 03 Jun 2019 08:39:58: #2 finished! INFO @ Mon, 03 Jun 2019 08:39:58: #2 predicted fragment length is 209 bps INFO @ Mon, 03 Jun 2019 08:39:58: #2 alternative fragment length(s) may be 209 bps INFO @ Mon, 03 Jun 2019 08:39:58: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.10_model.r INFO @ Mon, 03 Jun 2019 08:39:58: #3 Call peaks... INFO @ Mon, 03 Jun 2019 08:39:58: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 08:39:59: 60000000 INFO @ Mon, 03 Jun 2019 08:40:00: 56000000 INFO @ Mon, 03 Jun 2019 08:40:06: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 08:40:06: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 08:40:06: #1 total tags in treatment: 28362648 INFO @ Mon, 03 Jun 2019 08:40:06: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 08:40:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 08:40:07: #1 tags after filtering in treatment: 17041034 INFO @ Mon, 03 Jun 2019 08:40:07: #1 Redundant rate of treatment: 0.40 INFO @ Mon, 03 Jun 2019 08:40:07: #1 finished! INFO @ Mon, 03 Jun 2019 08:40:07: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 08:40:07: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 08:40:09: 57000000 INFO @ Mon, 03 Jun 2019 08:40:10: #2 number of paired peaks: 15211 INFO @ Mon, 03 Jun 2019 08:40:10: start model_add_line... INFO @ Mon, 03 Jun 2019 08:40:11: start X-correlation... INFO @ Mon, 03 Jun 2019 08:40:11: end of X-cor INFO @ Mon, 03 Jun 2019 08:40:11: #2 finished! INFO @ Mon, 03 Jun 2019 08:40:11: #2 predicted fragment length is 209 bps INFO @ Mon, 03 Jun 2019 08:40:11: #2 alternative fragment length(s) may be 209 bps INFO @ Mon, 03 Jun 2019 08:40:11: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.05_model.r INFO @ Mon, 03 Jun 2019 08:40:11: #3 Call peaks... INFO @ Mon, 03 Jun 2019 08:40:11: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 08:40:18: 58000000 BigWig に変換しました。 INFO @ Mon, 03 Jun 2019 08:40:26: 59000000 INFO @ Mon, 03 Jun 2019 08:40:34: 60000000 INFO @ Mon, 03 Jun 2019 08:40:44: #1 tag size is determined as 51 bps INFO @ Mon, 03 Jun 2019 08:40:44: #1 tag size = 51 INFO @ Mon, 03 Jun 2019 08:40:44: #1 total tags in treatment: 28362648 INFO @ Mon, 03 Jun 2019 08:40:44: #1 user defined the maximum tags... INFO @ Mon, 03 Jun 2019 08:40:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 03 Jun 2019 08:40:44: #1 tags after filtering in treatment: 17041034 INFO @ Mon, 03 Jun 2019 08:40:44: #1 Redundant rate of treatment: 0.40 INFO @ Mon, 03 Jun 2019 08:40:44: #1 finished! INFO @ Mon, 03 Jun 2019 08:40:44: #2 Build Peak Model... INFO @ Mon, 03 Jun 2019 08:40:44: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 03 Jun 2019 08:40:48: #2 number of paired peaks: 15211 INFO @ Mon, 03 Jun 2019 08:40:48: start model_add_line... INFO @ Mon, 03 Jun 2019 08:40:48: start X-correlation... INFO @ Mon, 03 Jun 2019 08:40:48: end of X-cor INFO @ Mon, 03 Jun 2019 08:40:48: #2 finished! INFO @ Mon, 03 Jun 2019 08:40:48: #2 predicted fragment length is 209 bps INFO @ Mon, 03 Jun 2019 08:40:48: #2 alternative fragment length(s) may be 209 bps INFO @ Mon, 03 Jun 2019 08:40:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.20_model.r INFO @ Mon, 03 Jun 2019 08:40:48: #3 Call peaks... INFO @ Mon, 03 Jun 2019 08:40:48: #3 Pre-compute pvalue-qvalue table... INFO @ Mon, 03 Jun 2019 08:41:19: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 08:41:30: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 08:41:47: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.10_peaks.xls INFO @ Mon, 03 Jun 2019 08:41:47: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.10_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 08:41:47: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.10_summits.bed INFO @ Mon, 03 Jun 2019 08:41:47: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (10915 records, 4 fields): 18 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 08:41:50: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.05_peaks.xls INFO @ Mon, 03 Jun 2019 08:41:50: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.05_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 08:41:50: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.05_summits.bed INFO @ Mon, 03 Jun 2019 08:41:50: Done! pass1 - making usageList (14 chroms): 5 millis pass2 - checking and writing primary data (11941 records, 4 fields): 19 millis CompletedMACS2peakCalling INFO @ Mon, 03 Jun 2019 08:42:07: #3 Call peaks for each chromosome... INFO @ Mon, 03 Jun 2019 08:42:27: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.20_peaks.xls INFO @ Mon, 03 Jun 2019 08:42:27: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.20_peaks.narrowPeak INFO @ Mon, 03 Jun 2019 08:42:27: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2612509/SRX2612509.20_summits.bed INFO @ Mon, 03 Jun 2019 08:42:27: Done! pass1 - making usageList (14 chroms): 4 millis pass2 - checking and writing primary data (9093 records, 4 fields): 13 millis CompletedMACS2peakCalling