Job ID = 11171155 sra ファイルのダウンロード中... Completed: 2893444K bytes transferred in 26 seconds (884717K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 102246732 spots for /home/okishinya/chipatlas/results/dm3/SRX2325661/SRR4896349.sra Written 102246732 spots for /home/okishinya/chipatlas/results/dm3/SRX2325661/SRR4896349.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:52:44 102246732 reads; of these: 102246732 (100.00%) were unpaired; of these: 8462070 (8.28%) aligned 0 times 74556638 (72.92%) aligned exactly 1 time 19228024 (18.81%) aligned >1 times 91.72% overall alignment rate Time searching: 00:52:44 Overall time: 00:52:44 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdupse_core] 27098857 / 93784662 = 0.2889 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 13:35:02: # Command line: callpeak -t SRX2325661.bam -f BAM -g dm -n SRX2325661.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2325661.10 # format = BAM # ChIP-seq file = ['SRX2325661.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 13:35:02: #1 read tag files... INFO @ Sat, 08 Sep 2018 13:35:02: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 13:35:02: # Command line: callpeak -t SRX2325661.bam -f BAM -g dm -n SRX2325661.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2325661.05 # format = BAM # ChIP-seq file = ['SRX2325661.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 13:35:02: #1 read tag files... INFO @ Sat, 08 Sep 2018 13:35:02: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 13:35:02: # Command line: callpeak -t SRX2325661.bam -f BAM -g dm -n SRX2325661.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2325661.20 # format = BAM # ChIP-seq file = ['SRX2325661.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 13:35:02: #1 read tag files... INFO @ Sat, 08 Sep 2018 13:35:02: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 13:35:09: 1000000 INFO @ Sat, 08 Sep 2018 13:35:09: 1000000 INFO @ Sat, 08 Sep 2018 13:35:09: 1000000 INFO @ Sat, 08 Sep 2018 13:35:16: 2000000 INFO @ Sat, 08 Sep 2018 13:35:16: 2000000 INFO @ Sat, 08 Sep 2018 13:35:16: 2000000 INFO @ Sat, 08 Sep 2018 13:35:24: 3000000 INFO @ Sat, 08 Sep 2018 13:35:24: 3000000 INFO @ Sat, 08 Sep 2018 13:35:24: 3000000 INFO @ Sat, 08 Sep 2018 13:35:31: 4000000 INFO @ Sat, 08 Sep 2018 13:35:31: 4000000 INFO @ Sat, 08 Sep 2018 13:35:31: 4000000 INFO @ Sat, 08 Sep 2018 13:35:38: 5000000 INFO @ Sat, 08 Sep 2018 13:35:38: 5000000 INFO @ Sat, 08 Sep 2018 13:35:38: 5000000 INFO @ Sat, 08 Sep 2018 13:35:45: 6000000 INFO @ Sat, 08 Sep 2018 13:35:45: 6000000 INFO @ Sat, 08 Sep 2018 13:35:45: 6000000 INFO @ Sat, 08 Sep 2018 13:35:52: 7000000 INFO @ Sat, 08 Sep 2018 13:35:52: 7000000 INFO @ Sat, 08 Sep 2018 13:35:53: 7000000 INFO @ Sat, 08 Sep 2018 13:35:59: 8000000 INFO @ Sat, 08 Sep 2018 13:35:59: 8000000 INFO @ Sat, 08 Sep 2018 13:36:00: 8000000 INFO @ Sat, 08 Sep 2018 13:36:06: 9000000 INFO @ Sat, 08 Sep 2018 13:36:06: 9000000 INFO @ Sat, 08 Sep 2018 13:36:07: 9000000 INFO @ Sat, 08 Sep 2018 13:36:13: 10000000 INFO @ Sat, 08 Sep 2018 13:36:13: 10000000 INFO @ Sat, 08 Sep 2018 13:36:14: 10000000 INFO @ Sat, 08 Sep 2018 13:36:20: 11000000 INFO @ Sat, 08 Sep 2018 13:36:20: 11000000 INFO @ Sat, 08 Sep 2018 13:36:21: 11000000 INFO @ Sat, 08 Sep 2018 13:36:27: 12000000 INFO @ Sat, 08 Sep 2018 13:36:28: 12000000 INFO @ Sat, 08 Sep 2018 13:36:28: 12000000 INFO @ Sat, 08 Sep 2018 13:36:34: 13000000 INFO @ Sat, 08 Sep 2018 13:36:35: 13000000 INFO @ Sat, 08 Sep 2018 13:36:36: 13000000 INFO @ Sat, 08 Sep 2018 13:36:41: 14000000 INFO @ Sat, 08 Sep 2018 13:36:42: 14000000 INFO @ Sat, 08 Sep 2018 13:36:43: 14000000 INFO @ Sat, 08 Sep 2018 13:36:48: 15000000 INFO @ Sat, 08 Sep 2018 13:36:49: 15000000 INFO @ Sat, 08 Sep 2018 13:36:50: 15000000 INFO @ Sat, 08 Sep 2018 13:36:56: 16000000 INFO @ Sat, 08 Sep 2018 13:36:56: 16000000 INFO @ Sat, 08 Sep 2018 13:36:57: 16000000 INFO @ Sat, 08 Sep 2018 13:37:03: 17000000 INFO @ Sat, 08 Sep 2018 13:37:03: 17000000 INFO @ Sat, 08 Sep 2018 13:37:04: 17000000 INFO @ Sat, 08 Sep 2018 13:37:10: 18000000 INFO @ Sat, 08 Sep 2018 13:37:10: 18000000 INFO @ Sat, 08 Sep 2018 13:37:11: 18000000 INFO @ Sat, 08 Sep 2018 13:37:17: 19000000 INFO @ Sat, 08 Sep 2018 13:37:17: 19000000 INFO @ Sat, 08 Sep 2018 13:37:18: 19000000 INFO @ Sat, 08 Sep 2018 13:37:24: 20000000 INFO @ Sat, 08 Sep 2018 13:37:24: 20000000 INFO @ Sat, 08 Sep 2018 13:37:25: 20000000 INFO @ Sat, 08 Sep 2018 13:37:31: 21000000 INFO @ Sat, 08 Sep 2018 13:37:32: 21000000 INFO @ Sat, 08 Sep 2018 13:37:32: 21000000 INFO @ Sat, 08 Sep 2018 13:37:38: 22000000 INFO @ Sat, 08 Sep 2018 13:37:39: 22000000 INFO @ Sat, 08 Sep 2018 13:37:40: 22000000 INFO @ Sat, 08 Sep 2018 13:37:46: 23000000 INFO @ Sat, 08 Sep 2018 13:37:46: 23000000 INFO @ Sat, 08 Sep 2018 13:37:47: 23000000 INFO @ Sat, 08 Sep 2018 13:37:53: 24000000 INFO @ Sat, 08 Sep 2018 13:37:53: 24000000 INFO @ Sat, 08 Sep 2018 13:37:54: 24000000 INFO @ Sat, 08 Sep 2018 13:38:00: 25000000 INFO @ Sat, 08 Sep 2018 13:38:00: 25000000 INFO @ Sat, 08 Sep 2018 13:38:01: 25000000 INFO @ Sat, 08 Sep 2018 13:38:07: 26000000 INFO @ Sat, 08 Sep 2018 13:38:07: 26000000 INFO @ Sat, 08 Sep 2018 13:38:09: 26000000 INFO @ Sat, 08 Sep 2018 13:38:14: 27000000 INFO @ Sat, 08 Sep 2018 13:38:15: 27000000 INFO @ Sat, 08 Sep 2018 13:38:16: 27000000 INFO @ Sat, 08 Sep 2018 13:38:21: 28000000 INFO @ Sat, 08 Sep 2018 13:38:22: 28000000 INFO @ Sat, 08 Sep 2018 13:38:24: 28000000 INFO @ Sat, 08 Sep 2018 13:38:28: 29000000 INFO @ Sat, 08 Sep 2018 13:38:29: 29000000 INFO @ Sat, 08 Sep 2018 13:38:31: 29000000 INFO @ Sat, 08 Sep 2018 13:38:36: 30000000 INFO @ Sat, 08 Sep 2018 13:38:36: 30000000 INFO @ Sat, 08 Sep 2018 13:38:39: 30000000 INFO @ Sat, 08 Sep 2018 13:38:43: 31000000 INFO @ Sat, 08 Sep 2018 13:38:43: 31000000 INFO @ Sat, 08 Sep 2018 13:38:47: 31000000 INFO @ Sat, 08 Sep 2018 13:38:50: 32000000 INFO @ Sat, 08 Sep 2018 13:38:50: 32000000 INFO @ Sat, 08 Sep 2018 13:38:54: 32000000 INFO @ Sat, 08 Sep 2018 13:38:57: 33000000 INFO @ Sat, 08 Sep 2018 13:38:58: 33000000 INFO @ Sat, 08 Sep 2018 13:39:02: 33000000 INFO @ Sat, 08 Sep 2018 13:39:04: 34000000 INFO @ Sat, 08 Sep 2018 13:39:05: 34000000 INFO @ Sat, 08 Sep 2018 13:39:09: 34000000 INFO @ Sat, 08 Sep 2018 13:39:11: 35000000 INFO @ Sat, 08 Sep 2018 13:39:12: 35000000 INFO @ Sat, 08 Sep 2018 13:39:17: 35000000 INFO @ Sat, 08 Sep 2018 13:39:18: 36000000 INFO @ Sat, 08 Sep 2018 13:39:20: 36000000 INFO @ Sat, 08 Sep 2018 13:39:24: 36000000 INFO @ Sat, 08 Sep 2018 13:39:25: 37000000 INFO @ Sat, 08 Sep 2018 13:39:27: 37000000 INFO @ Sat, 08 Sep 2018 13:39:32: 37000000 INFO @ Sat, 08 Sep 2018 13:39:33: 38000000 INFO @ Sat, 08 Sep 2018 13:39:34: 38000000 INFO @ Sat, 08 Sep 2018 13:39:39: 38000000 INFO @ Sat, 08 Sep 2018 13:39:40: 39000000 INFO @ Sat, 08 Sep 2018 13:39:42: 39000000 INFO @ Sat, 08 Sep 2018 13:39:46: 39000000 INFO @ Sat, 08 Sep 2018 13:39:47: 40000000 INFO @ Sat, 08 Sep 2018 13:39:49: 40000000 INFO @ Sat, 08 Sep 2018 13:39:53: 40000000 INFO @ Sat, 08 Sep 2018 13:39:55: 41000000 INFO @ Sat, 08 Sep 2018 13:39:56: 41000000 INFO @ Sat, 08 Sep 2018 13:40:00: 41000000 INFO @ Sat, 08 Sep 2018 13:40:02: 42000000 INFO @ Sat, 08 Sep 2018 13:40:04: 42000000 INFO @ Sat, 08 Sep 2018 13:40:07: 42000000 INFO @ Sat, 08 Sep 2018 13:40:09: 43000000 INFO @ Sat, 08 Sep 2018 13:40:11: 43000000 INFO @ Sat, 08 Sep 2018 13:40:14: 43000000 INFO @ Sat, 08 Sep 2018 13:40:17: 44000000 INFO @ Sat, 08 Sep 2018 13:40:19: 44000000 INFO @ Sat, 08 Sep 2018 13:40:21: 44000000 INFO @ Sat, 08 Sep 2018 13:40:24: 45000000 INFO @ Sat, 08 Sep 2018 13:40:26: 45000000 INFO @ Sat, 08 Sep 2018 13:40:28: 45000000 INFO @ Sat, 08 Sep 2018 13:40:32: 46000000 INFO @ Sat, 08 Sep 2018 13:40:33: 46000000 INFO @ Sat, 08 Sep 2018 13:40:36: 46000000 INFO @ Sat, 08 Sep 2018 13:40:39: 47000000 INFO @ Sat, 08 Sep 2018 13:40:41: 47000000 INFO @ Sat, 08 Sep 2018 13:40:44: 47000000 INFO @ Sat, 08 Sep 2018 13:40:46: 48000000 INFO @ Sat, 08 Sep 2018 13:40:48: 48000000 INFO @ Sat, 08 Sep 2018 13:40:51: 48000000 INFO @ Sat, 08 Sep 2018 13:40:53: 49000000 INFO @ Sat, 08 Sep 2018 13:40:56: 49000000 INFO @ Sat, 08 Sep 2018 13:40:58: 49000000 INFO @ Sat, 08 Sep 2018 13:41:01: 50000000 INFO @ Sat, 08 Sep 2018 13:41:03: 50000000 INFO @ Sat, 08 Sep 2018 13:41:05: 50000000 INFO @ Sat, 08 Sep 2018 13:41:08: 51000000 INFO @ Sat, 08 Sep 2018 13:41:11: 51000000 INFO @ Sat, 08 Sep 2018 13:41:12: 51000000 INFO @ Sat, 08 Sep 2018 13:41:15: 52000000 INFO @ Sat, 08 Sep 2018 13:41:18: 52000000 INFO @ Sat, 08 Sep 2018 13:41:19: 52000000 INFO @ Sat, 08 Sep 2018 13:41:23: 53000000 INFO @ Sat, 08 Sep 2018 13:41:25: 53000000 INFO @ Sat, 08 Sep 2018 13:41:26: 53000000 INFO @ Sat, 08 Sep 2018 13:41:30: 54000000 INFO @ Sat, 08 Sep 2018 13:41:33: 54000000 INFO @ Sat, 08 Sep 2018 13:41:34: 54000000 INFO @ Sat, 08 Sep 2018 13:41:38: 55000000 INFO @ Sat, 08 Sep 2018 13:41:40: 55000000 INFO @ Sat, 08 Sep 2018 13:41:41: 55000000 INFO @ Sat, 08 Sep 2018 13:41:45: 56000000 INFO @ Sat, 08 Sep 2018 13:41:48: 56000000 INFO @ Sat, 08 Sep 2018 13:41:48: 56000000 INFO @ Sat, 08 Sep 2018 13:41:53: 57000000 INFO @ Sat, 08 Sep 2018 13:41:55: 57000000 INFO @ Sat, 08 Sep 2018 13:41:56: 57000000 INFO @ Sat, 08 Sep 2018 13:42:00: 58000000 INFO @ Sat, 08 Sep 2018 13:42:02: 58000000 INFO @ Sat, 08 Sep 2018 13:42:03: 58000000 INFO @ Sat, 08 Sep 2018 13:42:08: 59000000 INFO @ Sat, 08 Sep 2018 13:42:10: 59000000 INFO @ Sat, 08 Sep 2018 13:42:11: 59000000 INFO @ Sat, 08 Sep 2018 13:42:16: 60000000 INFO @ Sat, 08 Sep 2018 13:42:17: 60000000 INFO @ Sat, 08 Sep 2018 13:42:18: 60000000 INFO @ Sat, 08 Sep 2018 13:42:23: 61000000 INFO @ Sat, 08 Sep 2018 13:42:24: 61000000 INFO @ Sat, 08 Sep 2018 13:42:26: 61000000 INFO @ Sat, 08 Sep 2018 13:42:31: 62000000 INFO @ Sat, 08 Sep 2018 13:42:31: 62000000 INFO @ Sat, 08 Sep 2018 13:42:33: 62000000 INFO @ Sat, 08 Sep 2018 13:42:38: 63000000 INFO @ Sat, 08 Sep 2018 13:42:38: 63000000 INFO @ Sat, 08 Sep 2018 13:42:41: 63000000 INFO @ Sat, 08 Sep 2018 13:42:45: 64000000 INFO @ Sat, 08 Sep 2018 13:42:46: 64000000 INFO @ Sat, 08 Sep 2018 13:42:48: 64000000 INFO @ Sat, 08 Sep 2018 13:42:53: 65000000 INFO @ Sat, 08 Sep 2018 13:42:53: 65000000 INFO @ Sat, 08 Sep 2018 13:42:56: 65000000 INFO @ Sat, 08 Sep 2018 13:43:00: 66000000 INFO @ Sat, 08 Sep 2018 13:43:00: 66000000 INFO @ Sat, 08 Sep 2018 13:43:03: 66000000 INFO @ Sat, 08 Sep 2018 13:43:05: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 13:43:05: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 13:43:05: #1 total tags in treatment: 66685805 INFO @ Sat, 08 Sep 2018 13:43:05: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 13:43:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 13:43:06: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 13:43:06: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 13:43:06: #1 total tags in treatment: 66685805 INFO @ Sat, 08 Sep 2018 13:43:06: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 13:43:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 13:43:07: #1 tags after filtering in treatment: 66685805 INFO @ Sat, 08 Sep 2018 13:43:07: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 13:43:07: #1 finished! INFO @ Sat, 08 Sep 2018 13:43:07: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 13:43:07: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 13:43:08: #1 tags after filtering in treatment: 66685805 INFO @ Sat, 08 Sep 2018 13:43:08: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 13:43:08: #1 finished! INFO @ Sat, 08 Sep 2018 13:43:08: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 13:43:08: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 13:43:08: #1 tag size is determined as 76 bps INFO @ Sat, 08 Sep 2018 13:43:08: #1 tag size = 76 INFO @ Sat, 08 Sep 2018 13:43:08: #1 total tags in treatment: 66685805 INFO @ Sat, 08 Sep 2018 13:43:08: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 13:43:08: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 13:43:10: #1 tags after filtering in treatment: 66685805 INFO @ Sat, 08 Sep 2018 13:43:10: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 08 Sep 2018 13:43:10: #1 finished! INFO @ Sat, 08 Sep 2018 13:43:10: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 13:43:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 13:43:11: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 13:43:11: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 13:43:11: Process for pairing-model is terminated! cat: SRX2325661.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2325661.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2325661.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2325661.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 13:43:12: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 13:43:12: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 13:43:12: Process for pairing-model is terminated! cat: SRX2325661.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2325661.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2325661.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2325661.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 13:43:14: #2 number of paired peaks: 0 WARNING @ Sat, 08 Sep 2018 13:43:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 08 Sep 2018 13:43:14: Process for pairing-model is terminated! cat: SRX2325661.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2325661.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2325661.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2325661.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。