Job ID = 6527662 SRX = SRX2000517 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2020-06-29T13:17:09 prefetch.2.10.7: 1) Downloading 'SRR4000144'... 2020-06-29T13:17:09 prefetch.2.10.7: Downloading via HTTPS... 2020-06-29T13:34:11 prefetch.2.10.7: HTTPS download succeed 2020-06-29T13:34:11 prefetch.2.10.7: 1) 'SRR4000144' was downloaded successfully Read 94859149 spots for SRR4000144/SRR4000144.sra Written 94859149 spots for SRR4000144/SRR4000144.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 03:31:28 94859149 reads; of these: 94859149 (100.00%) were paired; of these: 6370572 (6.72%) aligned concordantly 0 times 69729224 (73.51%) aligned concordantly exactly 1 time 18759353 (19.78%) aligned concordantly >1 times ---- 6370572 pairs aligned concordantly 0 times; of these: 263273 (4.13%) aligned discordantly 1 time ---- 6107299 pairs aligned 0 times concordantly or discordantly; of these: 12214598 mates make up the pairs; of these: 6929113 (56.73%) aligned 0 times 3473699 (28.44%) aligned exactly 1 time 1811786 (14.83%) aligned >1 times 96.35% overall alignment rate Time searching: 03:31:28 Overall time: 03:31:28 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 76 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 38714375 / 88620959 = 0.4369 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 30 Jun 2020 03:58:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 30 Jun 2020 03:58:48: #1 read tag files... INFO @ Tue, 30 Jun 2020 03:58:48: #1 read treatment tags... INFO @ Tue, 30 Jun 2020 03:58:54: 1000000 INFO @ Tue, 30 Jun 2020 03:59:01: 2000000 INFO @ Tue, 30 Jun 2020 03:59:07: 3000000 INFO @ Tue, 30 Jun 2020 03:59:13: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 30 Jun 2020 03:59:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 30 Jun 2020 03:59:18: #1 read tag files... INFO @ Tue, 30 Jun 2020 03:59:18: #1 read treatment tags... INFO @ Tue, 30 Jun 2020 03:59:20: 5000000 INFO @ Tue, 30 Jun 2020 03:59:25: 1000000 INFO @ Tue, 30 Jun 2020 03:59:27: 6000000 INFO @ Tue, 30 Jun 2020 03:59:32: 2000000 INFO @ Tue, 30 Jun 2020 03:59:34: 7000000 INFO @ Tue, 30 Jun 2020 03:59:40: 3000000 INFO @ Tue, 30 Jun 2020 03:59:42: 8000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 30 Jun 2020 03:59:47: 4000000 INFO @ Tue, 30 Jun 2020 03:59:48: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 30 Jun 2020 03:59:48: #1 read tag files... INFO @ Tue, 30 Jun 2020 03:59:48: #1 read treatment tags... INFO @ Tue, 30 Jun 2020 03:59:49: 9000000 INFO @ Tue, 30 Jun 2020 03:59:55: 5000000 INFO @ Tue, 30 Jun 2020 03:59:55: 1000000 INFO @ Tue, 30 Jun 2020 03:59:57: 10000000 INFO @ Tue, 30 Jun 2020 04:00:02: 6000000 INFO @ Tue, 30 Jun 2020 04:00:03: 2000000 INFO @ Tue, 30 Jun 2020 04:00:04: 11000000 INFO @ Tue, 30 Jun 2020 04:00:10: 7000000 INFO @ Tue, 30 Jun 2020 04:00:10: 3000000 INFO @ Tue, 30 Jun 2020 04:00:12: 12000000 INFO @ Tue, 30 Jun 2020 04:00:17: 8000000 INFO @ Tue, 30 Jun 2020 04:00:18: 4000000 INFO @ Tue, 30 Jun 2020 04:00:20: 13000000 INFO @ Tue, 30 Jun 2020 04:00:25: 9000000 INFO @ Tue, 30 Jun 2020 04:00:25: 5000000 INFO @ Tue, 30 Jun 2020 04:00:27: 14000000 INFO @ Tue, 30 Jun 2020 04:00:32: 10000000 INFO @ Tue, 30 Jun 2020 04:00:33: 6000000 INFO @ Tue, 30 Jun 2020 04:00:35: 15000000 INFO @ Tue, 30 Jun 2020 04:00:40: 11000000 INFO @ Tue, 30 Jun 2020 04:00:41: 7000000 INFO @ Tue, 30 Jun 2020 04:00:43: 16000000 INFO @ Tue, 30 Jun 2020 04:00:48: 12000000 INFO @ Tue, 30 Jun 2020 04:00:48: 8000000 INFO @ Tue, 30 Jun 2020 04:00:50: 17000000 INFO @ Tue, 30 Jun 2020 04:00:55: 13000000 INFO @ Tue, 30 Jun 2020 04:00:56: 9000000 INFO @ Tue, 30 Jun 2020 04:00:58: 18000000 INFO @ Tue, 30 Jun 2020 04:01:03: 14000000 INFO @ Tue, 30 Jun 2020 04:01:04: 10000000 INFO @ Tue, 30 Jun 2020 04:01:06: 19000000 INFO @ Tue, 30 Jun 2020 04:01:11: 15000000 INFO @ Tue, 30 Jun 2020 04:01:11: 11000000 INFO @ Tue, 30 Jun 2020 04:01:13: 20000000 INFO @ Tue, 30 Jun 2020 04:01:18: 16000000 INFO @ Tue, 30 Jun 2020 04:01:19: 12000000 INFO @ Tue, 30 Jun 2020 04:01:21: 21000000 INFO @ Tue, 30 Jun 2020 04:01:26: 17000000 INFO @ Tue, 30 Jun 2020 04:01:26: 13000000 INFO @ Tue, 30 Jun 2020 04:01:29: 22000000 INFO @ Tue, 30 Jun 2020 04:01:33: 18000000 INFO @ Tue, 30 Jun 2020 04:01:34: 14000000 INFO @ Tue, 30 Jun 2020 04:01:36: 23000000 INFO @ Tue, 30 Jun 2020 04:01:41: 19000000 INFO @ Tue, 30 Jun 2020 04:01:42: 15000000 INFO @ Tue, 30 Jun 2020 04:01:44: 24000000 INFO @ Tue, 30 Jun 2020 04:01:48: 20000000 INFO @ Tue, 30 Jun 2020 04:01:49: 16000000 INFO @ Tue, 30 Jun 2020 04:01:51: 25000000 INFO @ Tue, 30 Jun 2020 04:01:56: 21000000 INFO @ Tue, 30 Jun 2020 04:01:57: 17000000 INFO @ Tue, 30 Jun 2020 04:01:59: 26000000 INFO @ Tue, 30 Jun 2020 04:02:03: 22000000 INFO @ Tue, 30 Jun 2020 04:02:04: 18000000 INFO @ Tue, 30 Jun 2020 04:02:06: 27000000 INFO @ Tue, 30 Jun 2020 04:02:11: 23000000 INFO @ Tue, 30 Jun 2020 04:02:12: 19000000 INFO @ Tue, 30 Jun 2020 04:02:14: 28000000 INFO @ Tue, 30 Jun 2020 04:02:18: 24000000 INFO @ Tue, 30 Jun 2020 04:02:19: 20000000 INFO @ Tue, 30 Jun 2020 04:02:22: 29000000 INFO @ Tue, 30 Jun 2020 04:02:26: 25000000 INFO @ Tue, 30 Jun 2020 04:02:27: 21000000 INFO @ Tue, 30 Jun 2020 04:02:29: 30000000 INFO @ Tue, 30 Jun 2020 04:02:33: 26000000 INFO @ Tue, 30 Jun 2020 04:02:34: 22000000 INFO @ Tue, 30 Jun 2020 04:02:37: 31000000 INFO @ Tue, 30 Jun 2020 04:02:41: 27000000 INFO @ Tue, 30 Jun 2020 04:02:42: 23000000 INFO @ Tue, 30 Jun 2020 04:02:44: 32000000 INFO @ Tue, 30 Jun 2020 04:02:48: 28000000 INFO @ Tue, 30 Jun 2020 04:02:49: 24000000 INFO @ Tue, 30 Jun 2020 04:02:52: 33000000 INFO @ Tue, 30 Jun 2020 04:02:56: 29000000 INFO @ Tue, 30 Jun 2020 04:02:57: 25000000 INFO @ Tue, 30 Jun 2020 04:03:00: 34000000 INFO @ Tue, 30 Jun 2020 04:03:04: 30000000 INFO @ Tue, 30 Jun 2020 04:03:04: 26000000 INFO @ Tue, 30 Jun 2020 04:03:07: 35000000 INFO @ Tue, 30 Jun 2020 04:03:12: 31000000 INFO @ Tue, 30 Jun 2020 04:03:12: 27000000 INFO @ Tue, 30 Jun 2020 04:03:15: 36000000 INFO @ Tue, 30 Jun 2020 04:03:19: 32000000 INFO @ Tue, 30 Jun 2020 04:03:20: 28000000 INFO @ Tue, 30 Jun 2020 04:03:22: 37000000 INFO @ Tue, 30 Jun 2020 04:03:27: 33000000 INFO @ Tue, 30 Jun 2020 04:03:27: 29000000 INFO @ Tue, 30 Jun 2020 04:03:30: 38000000 INFO @ Tue, 30 Jun 2020 04:03:34: 34000000 INFO @ Tue, 30 Jun 2020 04:03:35: 30000000 INFO @ Tue, 30 Jun 2020 04:03:38: 39000000 INFO @ Tue, 30 Jun 2020 04:03:42: 35000000 INFO @ Tue, 30 Jun 2020 04:03:43: 31000000 INFO @ Tue, 30 Jun 2020 04:03:45: 40000000 INFO @ Tue, 30 Jun 2020 04:03:50: 36000000 INFO @ Tue, 30 Jun 2020 04:03:50: 32000000 INFO @ Tue, 30 Jun 2020 04:03:53: 41000000 INFO @ Tue, 30 Jun 2020 04:03:57: 37000000 INFO @ Tue, 30 Jun 2020 04:03:58: 33000000 INFO @ Tue, 30 Jun 2020 04:04:00: 42000000 INFO @ Tue, 30 Jun 2020 04:04:05: 38000000 INFO @ Tue, 30 Jun 2020 04:04:05: 34000000 INFO @ Tue, 30 Jun 2020 04:04:08: 43000000 INFO @ Tue, 30 Jun 2020 04:04:13: 39000000 INFO @ Tue, 30 Jun 2020 04:04:13: 35000000 INFO @ Tue, 30 Jun 2020 04:04:15: 44000000 INFO @ Tue, 30 Jun 2020 04:04:20: 36000000 INFO @ Tue, 30 Jun 2020 04:04:20: 40000000 INFO @ Tue, 30 Jun 2020 04:04:23: 45000000 INFO @ Tue, 30 Jun 2020 04:04:28: 37000000 INFO @ Tue, 30 Jun 2020 04:04:28: 41000000 INFO @ Tue, 30 Jun 2020 04:04:30: 46000000 INFO @ Tue, 30 Jun 2020 04:04:35: 38000000 INFO @ Tue, 30 Jun 2020 04:04:35: 42000000 INFO @ Tue, 30 Jun 2020 04:04:38: 47000000 INFO @ Tue, 30 Jun 2020 04:04:43: 39000000 INFO @ Tue, 30 Jun 2020 04:04:43: 43000000 INFO @ Tue, 30 Jun 2020 04:04:45: 48000000 INFO @ Tue, 30 Jun 2020 04:04:50: 40000000 INFO @ Tue, 30 Jun 2020 04:04:51: 44000000 INFO @ Tue, 30 Jun 2020 04:04:53: 49000000 INFO @ Tue, 30 Jun 2020 04:04:58: 41000000 INFO @ Tue, 30 Jun 2020 04:04:58: 45000000 INFO @ Tue, 30 Jun 2020 04:05:00: 50000000 INFO @ Tue, 30 Jun 2020 04:05:05: 42000000 INFO @ Tue, 30 Jun 2020 04:05:06: 46000000 INFO @ Tue, 30 Jun 2020 04:05:08: 51000000 INFO @ Tue, 30 Jun 2020 04:05:12: 43000000 INFO @ Tue, 30 Jun 2020 04:05:13: 47000000 INFO @ Tue, 30 Jun 2020 04:05:15: 52000000 INFO @ Tue, 30 Jun 2020 04:05:20: 44000000 INFO @ Tue, 30 Jun 2020 04:05:21: 48000000 INFO @ Tue, 30 Jun 2020 04:05:22: 53000000 INFO @ Tue, 30 Jun 2020 04:05:27: 45000000 INFO @ Tue, 30 Jun 2020 04:05:29: 49000000 INFO @ Tue, 30 Jun 2020 04:05:30: 54000000 INFO @ Tue, 30 Jun 2020 04:05:35: 46000000 INFO @ Tue, 30 Jun 2020 04:05:36: 50000000 INFO @ Tue, 30 Jun 2020 04:05:37: 55000000 INFO @ Tue, 30 Jun 2020 04:05:42: 47000000 INFO @ Tue, 30 Jun 2020 04:05:44: 51000000 INFO @ Tue, 30 Jun 2020 04:05:45: 56000000 INFO @ Tue, 30 Jun 2020 04:05:50: 48000000 INFO @ Tue, 30 Jun 2020 04:05:52: 52000000 INFO @ Tue, 30 Jun 2020 04:05:52: 57000000 INFO @ Tue, 30 Jun 2020 04:05:57: 49000000 INFO @ Tue, 30 Jun 2020 04:05:59: 53000000 INFO @ Tue, 30 Jun 2020 04:06:00: 58000000 INFO @ Tue, 30 Jun 2020 04:06:05: 50000000 INFO @ Tue, 30 Jun 2020 04:06:07: 54000000 INFO @ Tue, 30 Jun 2020 04:06:08: 59000000 INFO @ Tue, 30 Jun 2020 04:06:13: 51000000 INFO @ Tue, 30 Jun 2020 04:06:14: 55000000 INFO @ Tue, 30 Jun 2020 04:06:15: 60000000 INFO @ Tue, 30 Jun 2020 04:06:20: 52000000 INFO @ Tue, 30 Jun 2020 04:06:22: 56000000 INFO @ Tue, 30 Jun 2020 04:06:23: 61000000 INFO @ Tue, 30 Jun 2020 04:06:27: 53000000 INFO @ Tue, 30 Jun 2020 04:06:30: 57000000 INFO @ Tue, 30 Jun 2020 04:06:30: 62000000 INFO @ Tue, 30 Jun 2020 04:06:35: 54000000 INFO @ Tue, 30 Jun 2020 04:06:37: 58000000 INFO @ Tue, 30 Jun 2020 04:06:37: 63000000 INFO @ Tue, 30 Jun 2020 04:06:42: 55000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 30 Jun 2020 04:06:45: 59000000 INFO @ Tue, 30 Jun 2020 04:06:45: 64000000 INFO @ Tue, 30 Jun 2020 04:06:50: 56000000 INFO @ Tue, 30 Jun 2020 04:06:52: 60000000 INFO @ Tue, 30 Jun 2020 04:06:53: 65000000 INFO @ Tue, 30 Jun 2020 04:06:57: 57000000 INFO @ Tue, 30 Jun 2020 04:07:00: 66000000 INFO @ Tue, 30 Jun 2020 04:07:00: 61000000 INFO @ Tue, 30 Jun 2020 04:07:05: 58000000 INFO @ Tue, 30 Jun 2020 04:07:07: 67000000 INFO @ Tue, 30 Jun 2020 04:07:07: 62000000 INFO @ Tue, 30 Jun 2020 04:07:12: 59000000 INFO @ Tue, 30 Jun 2020 04:07:15: 68000000 INFO @ Tue, 30 Jun 2020 04:07:15: 63000000 INFO @ Tue, 30 Jun 2020 04:07:20: 60000000 INFO @ Tue, 30 Jun 2020 04:07:22: 69000000 INFO @ Tue, 30 Jun 2020 04:07:22: 64000000 INFO @ Tue, 30 Jun 2020 04:07:28: 61000000 INFO @ Tue, 30 Jun 2020 04:07:29: 70000000 INFO @ Tue, 30 Jun 2020 04:07:30: 65000000 INFO @ Tue, 30 Jun 2020 04:07:35: 62000000 INFO @ Tue, 30 Jun 2020 04:07:37: 71000000 INFO @ Tue, 30 Jun 2020 04:07:37: 66000000 INFO @ Tue, 30 Jun 2020 04:07:42: 63000000 INFO @ Tue, 30 Jun 2020 04:07:44: 72000000 INFO @ Tue, 30 Jun 2020 04:07:44: 67000000 INFO @ Tue, 30 Jun 2020 04:07:50: 64000000 INFO @ Tue, 30 Jun 2020 04:07:51: 73000000 INFO @ Tue, 30 Jun 2020 04:07:52: 68000000 INFO @ Tue, 30 Jun 2020 04:07:57: 65000000 INFO @ Tue, 30 Jun 2020 04:07:58: 74000000 INFO @ Tue, 30 Jun 2020 04:07:59: 69000000 INFO @ Tue, 30 Jun 2020 04:08:05: 66000000 INFO @ Tue, 30 Jun 2020 04:08:05: 75000000 INFO @ Tue, 30 Jun 2020 04:08:06: 70000000 INFO @ Tue, 30 Jun 2020 04:08:12: 67000000 INFO @ Tue, 30 Jun 2020 04:08:13: 76000000 INFO @ Tue, 30 Jun 2020 04:08:13: 71000000 INFO @ Tue, 30 Jun 2020 04:08:19: 68000000 INFO @ Tue, 30 Jun 2020 04:08:20: 77000000 INFO @ Tue, 30 Jun 2020 04:08:21: 72000000 INFO @ Tue, 30 Jun 2020 04:08:27: 69000000 INFO @ Tue, 30 Jun 2020 04:08:27: 78000000 INFO @ Tue, 30 Jun 2020 04:08:28: 73000000 INFO @ Tue, 30 Jun 2020 04:08:34: 70000000 INFO @ Tue, 30 Jun 2020 04:08:34: 79000000 INFO @ Tue, 30 Jun 2020 04:08:35: 74000000 INFO @ Tue, 30 Jun 2020 04:08:41: 71000000 INFO @ Tue, 30 Jun 2020 04:08:42: 80000000 INFO @ Tue, 30 Jun 2020 04:08:42: 75000000 INFO @ Tue, 30 Jun 2020 04:08:49: 72000000 INFO @ Tue, 30 Jun 2020 04:08:49: 81000000 INFO @ Tue, 30 Jun 2020 04:08:50: 76000000 INFO @ Tue, 30 Jun 2020 04:08:56: 73000000 INFO @ Tue, 30 Jun 2020 04:08:57: 82000000 INFO @ Tue, 30 Jun 2020 04:08:57: 77000000 INFO @ Tue, 30 Jun 2020 04:09:03: 74000000 INFO @ Tue, 30 Jun 2020 04:09:04: 83000000 INFO @ Tue, 30 Jun 2020 04:09:04: 78000000 INFO @ Tue, 30 Jun 2020 04:09:11: 75000000 INFO @ Tue, 30 Jun 2020 04:09:11: 84000000 INFO @ Tue, 30 Jun 2020 04:09:12: 79000000 BigWig に変換しました。 INFO @ Tue, 30 Jun 2020 04:09:18: 76000000 INFO @ Tue, 30 Jun 2020 04:09:19: 85000000 INFO @ Tue, 30 Jun 2020 04:09:19: 80000000 INFO @ Tue, 30 Jun 2020 04:09:25: 77000000 INFO @ Tue, 30 Jun 2020 04:09:26: 86000000 INFO @ Tue, 30 Jun 2020 04:09:27: 81000000 INFO @ Tue, 30 Jun 2020 04:09:33: 78000000 INFO @ Tue, 30 Jun 2020 04:09:34: 87000000 INFO @ Tue, 30 Jun 2020 04:09:34: 82000000 INFO @ Tue, 30 Jun 2020 04:09:40: 79000000 INFO @ Tue, 30 Jun 2020 04:09:41: 88000000 INFO @ Tue, 30 Jun 2020 04:09:41: 83000000 INFO @ Tue, 30 Jun 2020 04:09:48: 80000000 INFO @ Tue, 30 Jun 2020 04:09:49: 89000000 INFO @ Tue, 30 Jun 2020 04:09:49: 84000000 INFO @ Tue, 30 Jun 2020 04:09:55: 81000000 INFO @ Tue, 30 Jun 2020 04:09:56: 90000000 INFO @ Tue, 30 Jun 2020 04:09:56: 85000000 INFO @ Tue, 30 Jun 2020 04:10:03: 82000000 INFO @ Tue, 30 Jun 2020 04:10:04: 91000000 INFO @ Tue, 30 Jun 2020 04:10:04: 86000000 INFO @ Tue, 30 Jun 2020 04:10:10: 83000000 INFO @ Tue, 30 Jun 2020 04:10:11: 92000000 INFO @ Tue, 30 Jun 2020 04:10:11: 87000000 INFO @ Tue, 30 Jun 2020 04:10:18: 84000000 INFO @ Tue, 30 Jun 2020 04:10:19: 93000000 INFO @ Tue, 30 Jun 2020 04:10:19: 88000000 INFO @ Tue, 30 Jun 2020 04:10:25: 85000000 INFO @ Tue, 30 Jun 2020 04:10:26: 94000000 INFO @ Tue, 30 Jun 2020 04:10:26: 89000000 INFO @ Tue, 30 Jun 2020 04:10:32: 86000000 INFO @ Tue, 30 Jun 2020 04:10:33: 90000000 INFO @ Tue, 30 Jun 2020 04:10:34: 95000000 INFO @ Tue, 30 Jun 2020 04:10:40: 87000000 INFO @ Tue, 30 Jun 2020 04:10:41: 91000000 INFO @ Tue, 30 Jun 2020 04:10:41: 96000000 INFO @ Tue, 30 Jun 2020 04:10:47: 88000000 INFO @ Tue, 30 Jun 2020 04:10:48: 92000000 INFO @ Tue, 30 Jun 2020 04:10:49: 97000000 INFO @ Tue, 30 Jun 2020 04:10:55: 89000000 INFO @ Tue, 30 Jun 2020 04:10:56: 93000000 INFO @ Tue, 30 Jun 2020 04:10:56: 98000000 INFO @ Tue, 30 Jun 2020 04:11:02: 90000000 INFO @ Tue, 30 Jun 2020 04:11:03: 94000000 INFO @ Tue, 30 Jun 2020 04:11:03: 99000000 INFO @ Tue, 30 Jun 2020 04:11:09: 91000000 INFO @ Tue, 30 Jun 2020 04:11:11: 100000000 INFO @ Tue, 30 Jun 2020 04:11:11: 95000000 INFO @ Tue, 30 Jun 2020 04:11:17: 92000000 INFO @ Tue, 30 Jun 2020 04:11:18: 101000000 INFO @ Tue, 30 Jun 2020 04:11:18: 96000000 INFO @ Tue, 30 Jun 2020 04:11:24: 93000000 INFO @ Tue, 30 Jun 2020 04:11:25: 102000000 INFO @ Tue, 30 Jun 2020 04:11:25: 97000000 INFO @ Tue, 30 Jun 2020 04:11:32: 94000000 INFO @ Tue, 30 Jun 2020 04:11:33: 103000000 INFO @ Tue, 30 Jun 2020 04:11:33: 98000000 INFO @ Tue, 30 Jun 2020 04:11:39: 95000000 INFO @ Tue, 30 Jun 2020 04:11:40: 99000000 INFO @ Tue, 30 Jun 2020 04:11:40: 104000000 INFO @ Tue, 30 Jun 2020 04:11:47: 96000000 INFO @ Tue, 30 Jun 2020 04:11:47: 100000000 INFO @ Tue, 30 Jun 2020 04:11:48: 105000000 INFO @ Tue, 30 Jun 2020 04:11:51: #1 tag size is determined as 51 bps INFO @ Tue, 30 Jun 2020 04:11:51: #1 tag size = 51 INFO @ Tue, 30 Jun 2020 04:11:51: #1 total tags in treatment: 49841278 INFO @ Tue, 30 Jun 2020 04:11:51: #1 user defined the maximum tags... INFO @ Tue, 30 Jun 2020 04:11:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 30 Jun 2020 04:11:52: #1 tags after filtering in treatment: 40733731 INFO @ Tue, 30 Jun 2020 04:11:52: #1 Redundant rate of treatment: 0.18 INFO @ Tue, 30 Jun 2020 04:11:52: #1 finished! INFO @ Tue, 30 Jun 2020 04:11:52: #2 Build Peak Model... INFO @ Tue, 30 Jun 2020 04:11:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 30 Jun 2020 04:11:54: 97000000 INFO @ Tue, 30 Jun 2020 04:11:54: 101000000 INFO @ Tue, 30 Jun 2020 04:11:55: #2 number of paired peaks: 257 WARNING @ Tue, 30 Jun 2020 04:11:55: Fewer paired peaks (257) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 257 pairs to build model! INFO @ Tue, 30 Jun 2020 04:11:55: start model_add_line... INFO @ Tue, 30 Jun 2020 04:11:55: start X-correlation... INFO @ Tue, 30 Jun 2020 04:11:55: end of X-cor INFO @ Tue, 30 Jun 2020 04:11:55: #2 finished! INFO @ Tue, 30 Jun 2020 04:11:55: #2 predicted fragment length is 130 bps INFO @ Tue, 30 Jun 2020 04:11:55: #2 alternative fragment length(s) may be 2,114,130 bps INFO @ Tue, 30 Jun 2020 04:11:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.05_model.r INFO @ Tue, 30 Jun 2020 04:11:55: #3 Call peaks... INFO @ Tue, 30 Jun 2020 04:11:55: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 30 Jun 2020 04:12:01: 98000000 INFO @ Tue, 30 Jun 2020 04:12:01: 102000000 INFO @ Tue, 30 Jun 2020 04:12:08: 99000000 INFO @ Tue, 30 Jun 2020 04:12:09: 103000000 INFO @ Tue, 30 Jun 2020 04:12:15: 100000000 INFO @ Tue, 30 Jun 2020 04:12:16: 104000000 INFO @ Tue, 30 Jun 2020 04:12:22: 101000000 INFO @ Tue, 30 Jun 2020 04:12:23: 105000000 INFO @ Tue, 30 Jun 2020 04:12:26: #1 tag size is determined as 51 bps INFO @ Tue, 30 Jun 2020 04:12:26: #1 tag size = 51 INFO @ Tue, 30 Jun 2020 04:12:26: #1 total tags in treatment: 49841278 INFO @ Tue, 30 Jun 2020 04:12:26: #1 user defined the maximum tags... INFO @ Tue, 30 Jun 2020 04:12:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 30 Jun 2020 04:12:27: #1 tags after filtering in treatment: 40733731 INFO @ Tue, 30 Jun 2020 04:12:27: #1 Redundant rate of treatment: 0.18 INFO @ Tue, 30 Jun 2020 04:12:27: #1 finished! INFO @ Tue, 30 Jun 2020 04:12:27: #2 Build Peak Model... INFO @ Tue, 30 Jun 2020 04:12:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 30 Jun 2020 04:12:29: 102000000 INFO @ Tue, 30 Jun 2020 04:12:30: #2 number of paired peaks: 257 WARNING @ Tue, 30 Jun 2020 04:12:30: Fewer paired peaks (257) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 257 pairs to build model! INFO @ Tue, 30 Jun 2020 04:12:30: start model_add_line... INFO @ Tue, 30 Jun 2020 04:12:30: start X-correlation... INFO @ Tue, 30 Jun 2020 04:12:30: end of X-cor INFO @ Tue, 30 Jun 2020 04:12:30: #2 finished! INFO @ Tue, 30 Jun 2020 04:12:30: #2 predicted fragment length is 130 bps INFO @ Tue, 30 Jun 2020 04:12:30: #2 alternative fragment length(s) may be 2,114,130 bps INFO @ Tue, 30 Jun 2020 04:12:30: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.10_model.r INFO @ Tue, 30 Jun 2020 04:12:30: #3 Call peaks... INFO @ Tue, 30 Jun 2020 04:12:30: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 30 Jun 2020 04:12:35: 103000000 INFO @ Tue, 30 Jun 2020 04:12:42: 104000000 INFO @ Tue, 30 Jun 2020 04:12:49: 105000000 INFO @ Tue, 30 Jun 2020 04:12:51: #1 tag size is determined as 51 bps INFO @ Tue, 30 Jun 2020 04:12:51: #1 tag size = 51 INFO @ Tue, 30 Jun 2020 04:12:51: #1 total tags in treatment: 49841278 INFO @ Tue, 30 Jun 2020 04:12:51: #1 user defined the maximum tags... INFO @ Tue, 30 Jun 2020 04:12:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 30 Jun 2020 04:12:53: #1 tags after filtering in treatment: 40733731 INFO @ Tue, 30 Jun 2020 04:12:53: #1 Redundant rate of treatment: 0.18 INFO @ Tue, 30 Jun 2020 04:12:53: #1 finished! INFO @ Tue, 30 Jun 2020 04:12:53: #2 Build Peak Model... INFO @ Tue, 30 Jun 2020 04:12:53: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 30 Jun 2020 04:12:55: #2 number of paired peaks: 257 WARNING @ Tue, 30 Jun 2020 04:12:55: Fewer paired peaks (257) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 257 pairs to build model! INFO @ Tue, 30 Jun 2020 04:12:55: start model_add_line... INFO @ Tue, 30 Jun 2020 04:12:56: start X-correlation... INFO @ Tue, 30 Jun 2020 04:12:56: end of X-cor INFO @ Tue, 30 Jun 2020 04:12:56: #2 finished! INFO @ Tue, 30 Jun 2020 04:12:56: #2 predicted fragment length is 130 bps INFO @ Tue, 30 Jun 2020 04:12:56: #2 alternative fragment length(s) may be 2,114,130 bps INFO @ Tue, 30 Jun 2020 04:12:56: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.20_model.r INFO @ Tue, 30 Jun 2020 04:12:56: #3 Call peaks... INFO @ Tue, 30 Jun 2020 04:12:56: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 30 Jun 2020 04:13:09: #3 Call peaks for each chromosome... INFO @ Tue, 30 Jun 2020 04:13:41: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.05_peaks.xls INFO @ Tue, 30 Jun 2020 04:13:41: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.05_peaks.narrowPeak INFO @ Tue, 30 Jun 2020 04:13:41: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.05_summits.bed INFO @ Tue, 30 Jun 2020 04:13:41: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (7385 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Tue, 30 Jun 2020 04:13:44: #3 Call peaks for each chromosome... INFO @ Tue, 30 Jun 2020 04:14:09: #3 Call peaks for each chromosome... INFO @ Tue, 30 Jun 2020 04:14:15: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.10_peaks.xls INFO @ Tue, 30 Jun 2020 04:14:15: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.10_peaks.narrowPeak INFO @ Tue, 30 Jun 2020 04:14:15: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.10_summits.bed INFO @ Tue, 30 Jun 2020 04:14:15: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (3743 records, 4 fields): 7 millis CompletedMACS2peakCalling INFO @ Tue, 30 Jun 2020 04:14:40: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.20_peaks.xls INFO @ Tue, 30 Jun 2020 04:14:40: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.20_peaks.narrowPeak INFO @ Tue, 30 Jun 2020 04:14:40: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX2000517/SRX2000517.20_summits.bed INFO @ Tue, 30 Jun 2020 04:14:40: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1623 records, 4 fields): 4 millis CompletedMACS2peakCalling