Job ID = 11171114 sra ファイルのダウンロード中... Completed: 3577787K bytes transferred in 44 seconds (653542K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: PAIRED fastq に変換中... Read 86722784 spots for /home/okishinya/chipatlas/results/dm3/SRX2000513/SRR4000140.sra Written 86722784 spots for /home/okishinya/chipatlas/results/dm3/SRX2000513/SRR4000140.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:50:46 86722784 reads; of these: 86722784 (100.00%) were paired; of these: 9138262 (10.54%) aligned concordantly 0 times 65459566 (75.48%) aligned concordantly exactly 1 time 12124956 (13.98%) aligned concordantly >1 times ---- 9138262 pairs aligned concordantly 0 times; of these: 899775 (9.85%) aligned discordantly 1 time ---- 8238487 pairs aligned 0 times concordantly or discordantly; of these: 16476974 mates make up the pairs; of these: 8003159 (48.57%) aligned 0 times 5185606 (31.47%) aligned exactly 1 time 3288209 (19.96%) aligned >1 times 95.39% overall alignment rate Time searching: 02:50:47 Overall time: 02:50:47 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 68 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 28770233 / 77837039 = 0.3696 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 08 Sep 2018 15:29:32: # Command line: callpeak -t SRX2000513.bam -f BAM -g dm -n SRX2000513.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2000513.20 # format = BAM # ChIP-seq file = ['SRX2000513.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:29:32: # Command line: callpeak -t SRX2000513.bam -f BAM -g dm -n SRX2000513.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2000513.05 # format = BAM # ChIP-seq file = ['SRX2000513.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:29:32: # Command line: callpeak -t SRX2000513.bam -f BAM -g dm -n SRX2000513.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2000513.10 # format = BAM # ChIP-seq file = ['SRX2000513.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 08 Sep 2018 15:29:32: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:29:32: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:29:32: #1 read tag files... INFO @ Sat, 08 Sep 2018 15:29:32: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:29:32: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:29:32: #1 read treatment tags... INFO @ Sat, 08 Sep 2018 15:29:38: 1000000 INFO @ Sat, 08 Sep 2018 15:29:38: 1000000 INFO @ Sat, 08 Sep 2018 15:29:38: 1000000 INFO @ Sat, 08 Sep 2018 15:29:44: 2000000 INFO @ Sat, 08 Sep 2018 15:29:45: 2000000 INFO @ Sat, 08 Sep 2018 15:29:45: 2000000 INFO @ Sat, 08 Sep 2018 15:29:51: 3000000 INFO @ Sat, 08 Sep 2018 15:29:51: 3000000 INFO @ Sat, 08 Sep 2018 15:29:51: 3000000 INFO @ Sat, 08 Sep 2018 15:29:57: 4000000 INFO @ Sat, 08 Sep 2018 15:29:58: 4000000 INFO @ Sat, 08 Sep 2018 15:29:58: 4000000 INFO @ Sat, 08 Sep 2018 15:30:03: 5000000 INFO @ Sat, 08 Sep 2018 15:30:05: 5000000 INFO @ Sat, 08 Sep 2018 15:30:05: 5000000 INFO @ Sat, 08 Sep 2018 15:30:09: 6000000 INFO @ Sat, 08 Sep 2018 15:30:11: 6000000 INFO @ Sat, 08 Sep 2018 15:30:11: 6000000 INFO @ Sat, 08 Sep 2018 15:30:16: 7000000 INFO @ Sat, 08 Sep 2018 15:30:18: 7000000 INFO @ Sat, 08 Sep 2018 15:30:18: 7000000 INFO @ Sat, 08 Sep 2018 15:30:22: 8000000 INFO @ Sat, 08 Sep 2018 15:30:24: 8000000 INFO @ Sat, 08 Sep 2018 15:30:24: 8000000 INFO @ Sat, 08 Sep 2018 15:30:28: 9000000 INFO @ Sat, 08 Sep 2018 15:30:31: 9000000 INFO @ Sat, 08 Sep 2018 15:30:31: 9000000 INFO @ Sat, 08 Sep 2018 15:30:34: 10000000 INFO @ Sat, 08 Sep 2018 15:30:37: 10000000 INFO @ Sat, 08 Sep 2018 15:30:37: 10000000 INFO @ Sat, 08 Sep 2018 15:30:40: 11000000 INFO @ Sat, 08 Sep 2018 15:30:43: 11000000 INFO @ Sat, 08 Sep 2018 15:30:43: 11000000 INFO @ Sat, 08 Sep 2018 15:30:47: 12000000 INFO @ Sat, 08 Sep 2018 15:30:50: 12000000 INFO @ Sat, 08 Sep 2018 15:30:50: 12000000 INFO @ Sat, 08 Sep 2018 15:30:53: 13000000 INFO @ Sat, 08 Sep 2018 15:30:56: 13000000 INFO @ Sat, 08 Sep 2018 15:30:56: 13000000 INFO @ Sat, 08 Sep 2018 15:30:59: 14000000 INFO @ Sat, 08 Sep 2018 15:31:03: 14000000 INFO @ Sat, 08 Sep 2018 15:31:03: 14000000 INFO @ Sat, 08 Sep 2018 15:31:05: 15000000 INFO @ Sat, 08 Sep 2018 15:31:09: 15000000 INFO @ Sat, 08 Sep 2018 15:31:09: 15000000 INFO @ Sat, 08 Sep 2018 15:31:11: 16000000 INFO @ Sat, 08 Sep 2018 15:31:16: 16000000 INFO @ Sat, 08 Sep 2018 15:31:16: 16000000 INFO @ Sat, 08 Sep 2018 15:31:18: 17000000 INFO @ Sat, 08 Sep 2018 15:31:22: 17000000 INFO @ Sat, 08 Sep 2018 15:31:22: 17000000 INFO @ Sat, 08 Sep 2018 15:31:24: 18000000 INFO @ Sat, 08 Sep 2018 15:31:29: 18000000 INFO @ Sat, 08 Sep 2018 15:31:29: 18000000 INFO @ Sat, 08 Sep 2018 15:31:30: 19000000 INFO @ Sat, 08 Sep 2018 15:31:35: 19000000 INFO @ Sat, 08 Sep 2018 15:31:35: 19000000 INFO @ Sat, 08 Sep 2018 15:31:36: 20000000 INFO @ Sat, 08 Sep 2018 15:31:42: 20000000 INFO @ Sat, 08 Sep 2018 15:31:42: 20000000 INFO @ Sat, 08 Sep 2018 15:31:42: 21000000 INFO @ Sat, 08 Sep 2018 15:31:48: 21000000 INFO @ Sat, 08 Sep 2018 15:31:49: 22000000 INFO @ Sat, 08 Sep 2018 15:31:49: 21000000 INFO @ Sat, 08 Sep 2018 15:31:55: 23000000 INFO @ Sat, 08 Sep 2018 15:31:55: 22000000 INFO @ Sat, 08 Sep 2018 15:31:55: 22000000 INFO @ Sat, 08 Sep 2018 15:32:01: 24000000 INFO @ Sat, 08 Sep 2018 15:32:02: 23000000 INFO @ Sat, 08 Sep 2018 15:32:02: 23000000 INFO @ Sat, 08 Sep 2018 15:32:07: 25000000 INFO @ Sat, 08 Sep 2018 15:32:08: 24000000 INFO @ Sat, 08 Sep 2018 15:32:09: 24000000 INFO @ Sat, 08 Sep 2018 15:32:13: 26000000 INFO @ Sat, 08 Sep 2018 15:32:15: 25000000 INFO @ Sat, 08 Sep 2018 15:32:15: 25000000 INFO @ Sat, 08 Sep 2018 15:32:20: 27000000 INFO @ Sat, 08 Sep 2018 15:32:22: 26000000 INFO @ Sat, 08 Sep 2018 15:32:22: 26000000 INFO @ Sat, 08 Sep 2018 15:32:26: 28000000 INFO @ Sat, 08 Sep 2018 15:32:28: 27000000 INFO @ Sat, 08 Sep 2018 15:32:29: 27000000 INFO @ Sat, 08 Sep 2018 15:32:32: 29000000 INFO @ Sat, 08 Sep 2018 15:32:35: 28000000 INFO @ Sat, 08 Sep 2018 15:32:35: 28000000 INFO @ Sat, 08 Sep 2018 15:32:39: 30000000 INFO @ Sat, 08 Sep 2018 15:32:42: 29000000 INFO @ Sat, 08 Sep 2018 15:32:42: 29000000 INFO @ Sat, 08 Sep 2018 15:32:46: 31000000 INFO @ Sat, 08 Sep 2018 15:32:48: 30000000 INFO @ Sat, 08 Sep 2018 15:32:49: 30000000 INFO @ Sat, 08 Sep 2018 15:32:52: 32000000 INFO @ Sat, 08 Sep 2018 15:32:54: 31000000 INFO @ Sat, 08 Sep 2018 15:32:55: 31000000 INFO @ Sat, 08 Sep 2018 15:32:59: 33000000 INFO @ Sat, 08 Sep 2018 15:33:01: 32000000 INFO @ Sat, 08 Sep 2018 15:33:02: 32000000 INFO @ Sat, 08 Sep 2018 15:33:06: 34000000 INFO @ Sat, 08 Sep 2018 15:33:07: 33000000 INFO @ Sat, 08 Sep 2018 15:33:09: 33000000 INFO @ Sat, 08 Sep 2018 15:33:12: 35000000 INFO @ Sat, 08 Sep 2018 15:33:13: 34000000 INFO @ Sat, 08 Sep 2018 15:33:15: 34000000 INFO @ Sat, 08 Sep 2018 15:33:19: 36000000 INFO @ Sat, 08 Sep 2018 15:33:19: 35000000 INFO @ Sat, 08 Sep 2018 15:33:22: 35000000 INFO @ Sat, 08 Sep 2018 15:33:26: 36000000 INFO @ Sat, 08 Sep 2018 15:33:26: 37000000 INFO @ Sat, 08 Sep 2018 15:33:28: 36000000 INFO @ Sat, 08 Sep 2018 15:33:32: 37000000 INFO @ Sat, 08 Sep 2018 15:33:32: 38000000 INFO @ Sat, 08 Sep 2018 15:33:35: 37000000 INFO @ Sat, 08 Sep 2018 15:33:38: 38000000 INFO @ Sat, 08 Sep 2018 15:33:39: 39000000 INFO @ Sat, 08 Sep 2018 15:33:42: 38000000 INFO @ Sat, 08 Sep 2018 15:33:44: 39000000 INFO @ Sat, 08 Sep 2018 15:33:45: 40000000 INFO @ Sat, 08 Sep 2018 15:33:48: 39000000 INFO @ Sat, 08 Sep 2018 15:33:50: 40000000 INFO @ Sat, 08 Sep 2018 15:33:52: 41000000 INFO @ Sat, 08 Sep 2018 15:33:55: 40000000 INFO @ Sat, 08 Sep 2018 15:33:57: 41000000 INFO @ Sat, 08 Sep 2018 15:33:59: 42000000 INFO @ Sat, 08 Sep 2018 15:34:01: 41000000 INFO @ Sat, 08 Sep 2018 15:34:03: 42000000 INFO @ Sat, 08 Sep 2018 15:34:05: 43000000 INFO @ Sat, 08 Sep 2018 15:34:08: 42000000 INFO @ Sat, 08 Sep 2018 15:34:09: 43000000 INFO @ Sat, 08 Sep 2018 15:34:12: 44000000 INFO @ Sat, 08 Sep 2018 15:34:14: 43000000 INFO @ Sat, 08 Sep 2018 15:34:15: 44000000 INFO @ Sat, 08 Sep 2018 15:34:18: 45000000 INFO @ Sat, 08 Sep 2018 15:34:21: 44000000 INFO @ Sat, 08 Sep 2018 15:34:21: 45000000 INFO @ Sat, 08 Sep 2018 15:34:25: 46000000 INFO @ Sat, 08 Sep 2018 15:34:28: 45000000 INFO @ Sat, 08 Sep 2018 15:34:28: 46000000 INFO @ Sat, 08 Sep 2018 15:34:31: 47000000 INFO @ Sat, 08 Sep 2018 15:34:34: 47000000 INFO @ Sat, 08 Sep 2018 15:34:34: 46000000 INFO @ Sat, 08 Sep 2018 15:34:38: 48000000 INFO @ Sat, 08 Sep 2018 15:34:40: 48000000 INFO @ Sat, 08 Sep 2018 15:34:41: 47000000 INFO @ Sat, 08 Sep 2018 15:34:44: 49000000 INFO @ Sat, 08 Sep 2018 15:34:46: 49000000 INFO @ Sat, 08 Sep 2018 15:34:47: 48000000 INFO @ Sat, 08 Sep 2018 15:34:51: 50000000 INFO @ Sat, 08 Sep 2018 15:34:53: 50000000 INFO @ Sat, 08 Sep 2018 15:34:55: 49000000 INFO @ Sat, 08 Sep 2018 15:34:57: 51000000 INFO @ Sat, 08 Sep 2018 15:35:00: 51000000 INFO @ Sat, 08 Sep 2018 15:35:02: 50000000 INFO @ Sat, 08 Sep 2018 15:35:03: 52000000 INFO @ Sat, 08 Sep 2018 15:35:07: 52000000 INFO @ Sat, 08 Sep 2018 15:35:09: 51000000 INFO @ Sat, 08 Sep 2018 15:35:09: 53000000 INFO @ Sat, 08 Sep 2018 15:35:13: 53000000 INFO @ Sat, 08 Sep 2018 15:35:16: 54000000 INFO @ Sat, 08 Sep 2018 15:35:17: 52000000 INFO @ Sat, 08 Sep 2018 15:35:20: 54000000 INFO @ Sat, 08 Sep 2018 15:35:22: 55000000 INFO @ Sat, 08 Sep 2018 15:35:23: 53000000 INFO @ Sat, 08 Sep 2018 15:35:27: 55000000 INFO @ Sat, 08 Sep 2018 15:35:28: 56000000 INFO @ Sat, 08 Sep 2018 15:35:30: 54000000 INFO @ Sat, 08 Sep 2018 15:35:34: 56000000 INFO @ Sat, 08 Sep 2018 15:35:34: 57000000 INFO @ Sat, 08 Sep 2018 15:35:37: 55000000 INFO @ Sat, 08 Sep 2018 15:35:40: 58000000 INFO @ Sat, 08 Sep 2018 15:35:41: 57000000 INFO @ Sat, 08 Sep 2018 15:35:44: 56000000 INFO @ Sat, 08 Sep 2018 15:35:46: 59000000 INFO @ Sat, 08 Sep 2018 15:35:47: 58000000 INFO @ Sat, 08 Sep 2018 15:35:50: 57000000 INFO @ Sat, 08 Sep 2018 15:35:53: 60000000 INFO @ Sat, 08 Sep 2018 15:35:54: 59000000 INFO @ Sat, 08 Sep 2018 15:35:57: 58000000 INFO @ Sat, 08 Sep 2018 15:35:59: 61000000 INFO @ Sat, 08 Sep 2018 15:36:01: 60000000 INFO @ Sat, 08 Sep 2018 15:36:04: 59000000 INFO @ Sat, 08 Sep 2018 15:36:05: 62000000 INFO @ Sat, 08 Sep 2018 15:36:07: 61000000 INFO @ Sat, 08 Sep 2018 15:36:10: 60000000 INFO @ Sat, 08 Sep 2018 15:36:11: 63000000 INFO @ Sat, 08 Sep 2018 15:36:14: 62000000 INFO @ Sat, 08 Sep 2018 15:36:17: 61000000 INFO @ Sat, 08 Sep 2018 15:36:17: 64000000 INFO @ Sat, 08 Sep 2018 15:36:21: 63000000 INFO @ Sat, 08 Sep 2018 15:36:23: 65000000 INFO @ Sat, 08 Sep 2018 15:36:24: 62000000 INFO @ Sat, 08 Sep 2018 15:36:28: 64000000 INFO @ Sat, 08 Sep 2018 15:36:30: 66000000 INFO @ Sat, 08 Sep 2018 15:36:30: 63000000 INFO @ Sat, 08 Sep 2018 15:36:34: 65000000 INFO @ Sat, 08 Sep 2018 15:36:36: 67000000 INFO @ Sat, 08 Sep 2018 15:36:37: 64000000 INFO @ Sat, 08 Sep 2018 15:36:41: 66000000 INFO @ Sat, 08 Sep 2018 15:36:42: 68000000 INFO @ Sat, 08 Sep 2018 15:36:44: 65000000 INFO @ Sat, 08 Sep 2018 15:36:48: 69000000 INFO @ Sat, 08 Sep 2018 15:36:48: 67000000 INFO @ Sat, 08 Sep 2018 15:36:51: 66000000 INFO @ Sat, 08 Sep 2018 15:36:54: 70000000 INFO @ Sat, 08 Sep 2018 15:36:55: 68000000 INFO @ Sat, 08 Sep 2018 15:36:58: 67000000 INFO @ Sat, 08 Sep 2018 15:37:01: 71000000 INFO @ Sat, 08 Sep 2018 15:37:02: 69000000 INFO @ Sat, 08 Sep 2018 15:37:04: 68000000 INFO @ Sat, 08 Sep 2018 15:37:07: 72000000 INFO @ Sat, 08 Sep 2018 15:37:09: 70000000 INFO @ Sat, 08 Sep 2018 15:37:11: 69000000 INFO @ Sat, 08 Sep 2018 15:37:13: 73000000 INFO @ Sat, 08 Sep 2018 15:37:15: 71000000 INFO @ Sat, 08 Sep 2018 15:37:18: 70000000 INFO @ Sat, 08 Sep 2018 15:37:19: 74000000 INFO @ Sat, 08 Sep 2018 15:37:22: 72000000 INFO @ Sat, 08 Sep 2018 15:37:25: 71000000 INFO @ Sat, 08 Sep 2018 15:37:25: 75000000 INFO @ Sat, 08 Sep 2018 15:37:29: 73000000 INFO @ Sat, 08 Sep 2018 15:37:31: 76000000 INFO @ Sat, 08 Sep 2018 15:37:31: 72000000 INFO @ Sat, 08 Sep 2018 15:37:36: 74000000 INFO @ Sat, 08 Sep 2018 15:37:38: 77000000 INFO @ Sat, 08 Sep 2018 15:37:38: 73000000 INFO @ Sat, 08 Sep 2018 15:37:43: 75000000 INFO @ Sat, 08 Sep 2018 15:37:44: 78000000 INFO @ Sat, 08 Sep 2018 15:37:45: 74000000 INFO @ Sat, 08 Sep 2018 15:37:49: 76000000 INFO @ Sat, 08 Sep 2018 15:37:50: 79000000 INFO @ Sat, 08 Sep 2018 15:37:52: 75000000 INFO @ Sat, 08 Sep 2018 15:37:56: 80000000 INFO @ Sat, 08 Sep 2018 15:37:56: 77000000 INFO @ Sat, 08 Sep 2018 15:37:58: 76000000 INFO @ Sat, 08 Sep 2018 15:38:02: 81000000 INFO @ Sat, 08 Sep 2018 15:38:03: 78000000 INFO @ Sat, 08 Sep 2018 15:38:05: 77000000 INFO @ Sat, 08 Sep 2018 15:38:08: 82000000 INFO @ Sat, 08 Sep 2018 15:38:10: 79000000 INFO @ Sat, 08 Sep 2018 15:38:12: 78000000 INFO @ Sat, 08 Sep 2018 15:38:15: 83000000 INFO @ Sat, 08 Sep 2018 15:38:16: 80000000 INFO @ Sat, 08 Sep 2018 15:38:19: 79000000 INFO @ Sat, 08 Sep 2018 15:38:21: 84000000 INFO @ Sat, 08 Sep 2018 15:38:23: 81000000 INFO @ Sat, 08 Sep 2018 15:38:25: 80000000 INFO @ Sat, 08 Sep 2018 15:38:27: 85000000 INFO @ Sat, 08 Sep 2018 15:38:30: 82000000 INFO @ Sat, 08 Sep 2018 15:38:32: 81000000 INFO @ Sat, 08 Sep 2018 15:38:33: 86000000 INFO @ Sat, 08 Sep 2018 15:38:37: 83000000 INFO @ Sat, 08 Sep 2018 15:38:39: 82000000 INFO @ Sat, 08 Sep 2018 15:38:39: 87000000 INFO @ Sat, 08 Sep 2018 15:38:44: 84000000 INFO @ Sat, 08 Sep 2018 15:38:45: 88000000 INFO @ Sat, 08 Sep 2018 15:38:46: 83000000 INFO @ Sat, 08 Sep 2018 15:38:51: 85000000 INFO @ Sat, 08 Sep 2018 15:38:51: 89000000 INFO @ Sat, 08 Sep 2018 15:38:52: 84000000 INFO @ Sat, 08 Sep 2018 15:38:57: 86000000 INFO @ Sat, 08 Sep 2018 15:38:58: 90000000 INFO @ Sat, 08 Sep 2018 15:38:59: 85000000 INFO @ Sat, 08 Sep 2018 15:39:04: 91000000 INFO @ Sat, 08 Sep 2018 15:39:04: 87000000 INFO @ Sat, 08 Sep 2018 15:39:06: 86000000 INFO @ Sat, 08 Sep 2018 15:39:10: 92000000 INFO @ Sat, 08 Sep 2018 15:39:11: 88000000 INFO @ Sat, 08 Sep 2018 15:39:12: 87000000 INFO @ Sat, 08 Sep 2018 15:39:16: 93000000 INFO @ Sat, 08 Sep 2018 15:39:17: 89000000 INFO @ Sat, 08 Sep 2018 15:39:19: 88000000 INFO @ Sat, 08 Sep 2018 15:39:22: 94000000 INFO @ Sat, 08 Sep 2018 15:39:24: 90000000 INFO @ Sat, 08 Sep 2018 15:39:25: 89000000 INFO @ Sat, 08 Sep 2018 15:39:28: 95000000 INFO @ Sat, 08 Sep 2018 15:39:30: 91000000 INFO @ Sat, 08 Sep 2018 15:39:32: 90000000 INFO @ Sat, 08 Sep 2018 15:39:34: 96000000 INFO @ Sat, 08 Sep 2018 15:39:37: 92000000 INFO @ Sat, 08 Sep 2018 15:39:38: 91000000 INFO @ Sat, 08 Sep 2018 15:39:41: 97000000 INFO @ Sat, 08 Sep 2018 15:39:44: 93000000 INFO @ Sat, 08 Sep 2018 15:39:44: 92000000 INFO @ Sat, 08 Sep 2018 15:39:48: 98000000 INFO @ Sat, 08 Sep 2018 15:39:50: 93000000 INFO @ Sat, 08 Sep 2018 15:39:50: 94000000 INFO @ Sat, 08 Sep 2018 15:39:54: 99000000 INFO @ Sat, 08 Sep 2018 15:39:56: 94000000 INFO @ Sat, 08 Sep 2018 15:39:57: 95000000 INFO @ Sat, 08 Sep 2018 15:40:01: 100000000 INFO @ Sat, 08 Sep 2018 15:40:02: 95000000 INFO @ Sat, 08 Sep 2018 15:40:03: 96000000 INFO @ Sat, 08 Sep 2018 15:40:07: 101000000 INFO @ Sat, 08 Sep 2018 15:40:08: 96000000 INFO @ Sat, 08 Sep 2018 15:40:10: 97000000 INFO @ Sat, 08 Sep 2018 15:40:14: 97000000 INFO @ Sat, 08 Sep 2018 15:40:14: 102000000 INFO @ Sat, 08 Sep 2018 15:40:17: 98000000 INFO @ Sat, 08 Sep 2018 15:40:20: 98000000 INFO @ Sat, 08 Sep 2018 15:40:21: 103000000 INFO @ Sat, 08 Sep 2018 15:40:23: 99000000 INFO @ Sat, 08 Sep 2018 15:40:26: 99000000 INFO @ Sat, 08 Sep 2018 15:40:27: 104000000 INFO @ Sat, 08 Sep 2018 15:40:30: 100000000 INFO @ Sat, 08 Sep 2018 15:40:32: 100000000 INFO @ Sat, 08 Sep 2018 15:40:34: 105000000 INFO @ Sat, 08 Sep 2018 15:40:36: 101000000 INFO @ Sat, 08 Sep 2018 15:40:38: 101000000 INFO @ Sat, 08 Sep 2018 15:40:40: 106000000 INFO @ Sat, 08 Sep 2018 15:40:43: 102000000 INFO @ Sat, 08 Sep 2018 15:40:44: 102000000 INFO @ Sat, 08 Sep 2018 15:40:47: 107000000 INFO @ Sat, 08 Sep 2018 15:40:50: 103000000 INFO @ Sat, 08 Sep 2018 15:40:50: 103000000 INFO @ Sat, 08 Sep 2018 15:40:53: #1 tag size is determined as 51 bps INFO @ Sat, 08 Sep 2018 15:40:53: #1 tag size = 51 INFO @ Sat, 08 Sep 2018 15:40:53: #1 total tags in treatment: 48906920 INFO @ Sat, 08 Sep 2018 15:40:53: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:40:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:40:54: #1 tags after filtering in treatment: 32625495 INFO @ Sat, 08 Sep 2018 15:40:54: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 08 Sep 2018 15:40:54: #1 finished! INFO @ Sat, 08 Sep 2018 15:40:54: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:40:54: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:40:56: 104000000 INFO @ Sat, 08 Sep 2018 15:40:56: 104000000 INFO @ Sat, 08 Sep 2018 15:40:57: #2 number of paired peaks: 2078 INFO @ Sat, 08 Sep 2018 15:40:57: start model_add_line... INFO @ Sat, 08 Sep 2018 15:40:57: start X-correlation... INFO @ Sat, 08 Sep 2018 15:40:57: end of X-cor INFO @ Sat, 08 Sep 2018 15:40:57: #2 finished! INFO @ Sat, 08 Sep 2018 15:40:57: #2 predicted fragment length is 192 bps INFO @ Sat, 08 Sep 2018 15:40:57: #2 alternative fragment length(s) may be 3,192 bps INFO @ Sat, 08 Sep 2018 15:40:57: #2.2 Generate R script for model : SRX2000513.05_model.r INFO @ Sat, 08 Sep 2018 15:40:57: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:40:57: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:41:02: 105000000 INFO @ Sat, 08 Sep 2018 15:41:02: 105000000 INFO @ Sat, 08 Sep 2018 15:41:08: 106000000 INFO @ Sat, 08 Sep 2018 15:41:08: 106000000 INFO @ Sat, 08 Sep 2018 15:41:14: 107000000 INFO @ Sat, 08 Sep 2018 15:41:14: 107000000 INFO @ Sat, 08 Sep 2018 15:41:20: #1 tag size is determined as 51 bps INFO @ Sat, 08 Sep 2018 15:41:20: #1 tag size = 51 INFO @ Sat, 08 Sep 2018 15:41:20: #1 total tags in treatment: 48906920 INFO @ Sat, 08 Sep 2018 15:41:20: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:41:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:41:21: #1 tag size is determined as 51 bps INFO @ Sat, 08 Sep 2018 15:41:21: #1 tag size = 51 INFO @ Sat, 08 Sep 2018 15:41:21: #1 total tags in treatment: 48906920 INFO @ Sat, 08 Sep 2018 15:41:21: #1 user defined the maximum tags... INFO @ Sat, 08 Sep 2018 15:41:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 08 Sep 2018 15:41:21: #1 tags after filtering in treatment: 32625495 INFO @ Sat, 08 Sep 2018 15:41:21: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 08 Sep 2018 15:41:21: #1 finished! INFO @ Sat, 08 Sep 2018 15:41:21: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:41:21: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:41:22: #1 tags after filtering in treatment: 32625495 INFO @ Sat, 08 Sep 2018 15:41:22: #1 Redundant rate of treatment: 0.33 INFO @ Sat, 08 Sep 2018 15:41:22: #1 finished! INFO @ Sat, 08 Sep 2018 15:41:22: #2 Build Peak Model... INFO @ Sat, 08 Sep 2018 15:41:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 08 Sep 2018 15:41:24: #2 number of paired peaks: 2078 INFO @ Sat, 08 Sep 2018 15:41:24: start model_add_line... INFO @ Sat, 08 Sep 2018 15:41:24: start X-correlation... INFO @ Sat, 08 Sep 2018 15:41:24: end of X-cor INFO @ Sat, 08 Sep 2018 15:41:24: #2 finished! INFO @ Sat, 08 Sep 2018 15:41:24: #2 predicted fragment length is 192 bps INFO @ Sat, 08 Sep 2018 15:41:24: #2 alternative fragment length(s) may be 3,192 bps INFO @ Sat, 08 Sep 2018 15:41:24: #2.2 Generate R script for model : SRX2000513.20_model.r INFO @ Sat, 08 Sep 2018 15:41:24: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:41:24: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:41:24: #2 number of paired peaks: 2078 INFO @ Sat, 08 Sep 2018 15:41:24: start model_add_line... INFO @ Sat, 08 Sep 2018 15:41:25: start X-correlation... INFO @ Sat, 08 Sep 2018 15:41:25: end of X-cor INFO @ Sat, 08 Sep 2018 15:41:25: #2 finished! INFO @ Sat, 08 Sep 2018 15:41:25: #2 predicted fragment length is 192 bps INFO @ Sat, 08 Sep 2018 15:41:25: #2 alternative fragment length(s) may be 3,192 bps INFO @ Sat, 08 Sep 2018 15:41:25: #2.2 Generate R script for model : SRX2000513.10_model.r INFO @ Sat, 08 Sep 2018 15:41:25: #3 Call peaks... INFO @ Sat, 08 Sep 2018 15:41:25: #3 Pre-compute pvalue-qvalue table... INFO @ Sat, 08 Sep 2018 15:42:29: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:42:53: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:42:56: #3 Call peaks for each chromosome... INFO @ Sat, 08 Sep 2018 15:43:10: #4 Write output xls file... SRX2000513.05_peaks.xls INFO @ Sat, 08 Sep 2018 15:43:10: #4 Write peak in narrowPeak format file... SRX2000513.05_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:43:10: #4 Write summits bed file... SRX2000513.05_summits.bed INFO @ Sat, 08 Sep 2018 15:43:10: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (18595 records, 4 fields): 49 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 15:43:29: #4 Write output xls file... SRX2000513.20_peaks.xls INFO @ Sat, 08 Sep 2018 15:43:29: #4 Write peak in narrowPeak format file... SRX2000513.20_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:43:29: #4 Write summits bed file... SRX2000513.20_summits.bed INFO @ Sat, 08 Sep 2018 15:43:29: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (7578 records, 4 fields): 10 millis CompletedMACS2peakCalling INFO @ Sat, 08 Sep 2018 15:43:33: #4 Write output xls file... SRX2000513.10_peaks.xls INFO @ Sat, 08 Sep 2018 15:43:33: #4 Write peak in narrowPeak format file... SRX2000513.10_peaks.narrowPeak INFO @ Sat, 08 Sep 2018 15:43:33: #4 Write summits bed file... SRX2000513.10_summits.bed INFO @ Sat, 08 Sep 2018 15:43:33: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (13870 records, 4 fields): 17 millis CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。