Job ID = 9158596 sra ファイルのダウンロード中... Completed: 4928931K bytes transferred in 45 seconds (878325K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 117736006 spots for /home/okishinya/chipatlas/results/dm3/SRX1847040/SRR3669857.sra Written 117736006 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:51:26 117736006 reads; of these: 117736006 (100.00%) were unpaired; of these: 3432105 (2.92%) aligned 0 times 81812721 (69.49%) aligned exactly 1 time 32491180 (27.60%) aligned >1 times 97.08% overall alignment rate Time searching: 00:51:26 Overall time: 00:51:26 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 48 files... [bam_rmdupse_core] 51258494 / 114303901 = 0.4484 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Tue, 27 Jun 2017 19:46:54: # Command line: callpeak -t SRX1847040.bam -f BAM -g dm -n SRX1847040.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX1847040.20 # format = BAM # ChIP-seq file = ['SRX1847040.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 19:46:54: #1 read tag files... INFO @ Tue, 27 Jun 2017 19:46:54: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 19:46:54: # Command line: callpeak -t SRX1847040.bam -f BAM -g dm -n SRX1847040.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX1847040.05 # format = BAM # ChIP-seq file = ['SRX1847040.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 19:46:54: #1 read tag files... INFO @ Tue, 27 Jun 2017 19:46:54: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 19:46:54: # Command line: callpeak -t SRX1847040.bam -f BAM -g dm -n SRX1847040.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX1847040.10 # format = BAM # ChIP-seq file = ['SRX1847040.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 27 Jun 2017 19:46:54: #1 read tag files... INFO @ Tue, 27 Jun 2017 19:46:54: #1 read treatment tags... INFO @ Tue, 27 Jun 2017 19:47:01: 1000000 INFO @ Tue, 27 Jun 2017 19:47:01: 1000000 INFO @ Tue, 27 Jun 2017 19:47:01: 1000000 INFO @ Tue, 27 Jun 2017 19:47:07: 2000000 INFO @ Tue, 27 Jun 2017 19:47:07: 2000000 INFO @ Tue, 27 Jun 2017 19:47:07: 2000000 INFO @ Tue, 27 Jun 2017 19:47:13: 3000000 INFO @ Tue, 27 Jun 2017 19:47:14: 3000000 INFO @ Tue, 27 Jun 2017 19:47:14: 3000000 INFO @ Tue, 27 Jun 2017 19:47:20: 4000000 INFO @ Tue, 27 Jun 2017 19:47:20: 4000000 INFO @ Tue, 27 Jun 2017 19:47:20: 4000000 INFO @ Tue, 27 Jun 2017 19:47:26: 5000000 INFO @ Tue, 27 Jun 2017 19:47:27: 5000000 INFO @ Tue, 27 Jun 2017 19:47:27: 5000000 INFO @ Tue, 27 Jun 2017 19:47:33: 6000000 INFO @ Tue, 27 Jun 2017 19:47:33: 6000000 INFO @ Tue, 27 Jun 2017 19:47:33: 6000000 INFO @ Tue, 27 Jun 2017 19:47:39: 7000000 INFO @ Tue, 27 Jun 2017 19:47:40: 7000000 INFO @ Tue, 27 Jun 2017 19:47:40: 7000000 INFO @ Tue, 27 Jun 2017 19:47:46: 8000000 INFO @ Tue, 27 Jun 2017 19:47:46: 8000000 INFO @ Tue, 27 Jun 2017 19:47:46: 8000000 INFO @ Tue, 27 Jun 2017 19:47:52: 9000000 INFO @ Tue, 27 Jun 2017 19:47:53: 9000000 INFO @ Tue, 27 Jun 2017 19:47:53: 9000000 INFO @ Tue, 27 Jun 2017 19:47:59: 10000000 INFO @ Tue, 27 Jun 2017 19:47:59: 10000000 INFO @ Tue, 27 Jun 2017 19:47:59: 10000000 INFO @ Tue, 27 Jun 2017 19:48:05: 11000000 INFO @ Tue, 27 Jun 2017 19:48:06: 11000000 INFO @ Tue, 27 Jun 2017 19:48:06: 11000000 INFO @ Tue, 27 Jun 2017 19:48:12: 12000000 INFO @ Tue, 27 Jun 2017 19:48:12: 12000000 INFO @ Tue, 27 Jun 2017 19:48:12: 12000000 INFO @ Tue, 27 Jun 2017 19:48:18: 13000000 INFO @ Tue, 27 Jun 2017 19:48:19: 13000000 INFO @ Tue, 27 Jun 2017 19:48:19: 13000000 INFO @ Tue, 27 Jun 2017 19:48:24: 14000000 INFO @ Tue, 27 Jun 2017 19:48:25: 14000000 INFO @ Tue, 27 Jun 2017 19:48:25: 14000000 INFO @ Tue, 27 Jun 2017 19:48:31: 15000000 INFO @ Tue, 27 Jun 2017 19:48:32: 15000000 INFO @ Tue, 27 Jun 2017 19:48:32: 15000000 INFO @ Tue, 27 Jun 2017 19:48:37: 16000000 INFO @ Tue, 27 Jun 2017 19:48:38: 16000000 INFO @ Tue, 27 Jun 2017 19:48:38: 16000000 INFO @ Tue, 27 Jun 2017 19:48:43: 17000000 INFO @ Tue, 27 Jun 2017 19:48:45: 17000000 INFO @ Tue, 27 Jun 2017 19:48:45: 17000000 INFO @ Tue, 27 Jun 2017 19:48:50: 18000000 INFO @ Tue, 27 Jun 2017 19:48:51: 18000000 INFO @ Tue, 27 Jun 2017 19:48:51: 18000000 INFO @ Tue, 27 Jun 2017 19:48:56: 19000000 INFO @ Tue, 27 Jun 2017 19:48:58: 19000000 INFO @ Tue, 27 Jun 2017 19:48:58: 19000000 INFO @ Tue, 27 Jun 2017 19:49:02: 20000000 INFO @ Tue, 27 Jun 2017 19:49:04: 20000000 INFO @ Tue, 27 Jun 2017 19:49:04: 20000000 INFO @ Tue, 27 Jun 2017 19:49:09: 21000000 INFO @ Tue, 27 Jun 2017 19:49:11: 21000000 INFO @ Tue, 27 Jun 2017 19:49:11: 21000000 INFO @ Tue, 27 Jun 2017 19:49:15: 22000000 INFO @ Tue, 27 Jun 2017 19:49:17: 22000000 INFO @ Tue, 27 Jun 2017 19:49:17: 22000000 INFO @ Tue, 27 Jun 2017 19:49:21: 23000000 INFO @ Tue, 27 Jun 2017 19:49:23: 23000000 INFO @ Tue, 27 Jun 2017 19:49:23: 23000000 INFO @ Tue, 27 Jun 2017 19:49:28: 24000000 INFO @ Tue, 27 Jun 2017 19:49:30: 24000000 INFO @ Tue, 27 Jun 2017 19:49:30: 24000000 INFO @ Tue, 27 Jun 2017 19:49:34: 25000000 INFO @ Tue, 27 Jun 2017 19:49:36: 25000000 INFO @ Tue, 27 Jun 2017 19:49:36: 25000000 INFO @ Tue, 27 Jun 2017 19:49:40: 26000000 INFO @ Tue, 27 Jun 2017 19:49:43: 26000000 INFO @ Tue, 27 Jun 2017 19:49:43: 26000000 INFO @ Tue, 27 Jun 2017 19:49:47: 27000000 INFO @ Tue, 27 Jun 2017 19:49:49: 27000000 INFO @ Tue, 27 Jun 2017 19:49:49: 27000000 INFO @ Tue, 27 Jun 2017 19:49:53: 28000000 INFO @ Tue, 27 Jun 2017 19:49:56: 28000000 INFO @ Tue, 27 Jun 2017 19:49:56: 28000000 INFO @ Tue, 27 Jun 2017 19:49:59: 29000000 INFO @ Tue, 27 Jun 2017 19:50:02: 29000000 INFO @ Tue, 27 Jun 2017 19:50:02: 29000000 INFO @ Tue, 27 Jun 2017 19:50:05: 30000000 INFO @ Tue, 27 Jun 2017 19:50:09: 30000000 INFO @ Tue, 27 Jun 2017 19:50:09: 30000000 INFO @ Tue, 27 Jun 2017 19:50:12: 31000000 INFO @ Tue, 27 Jun 2017 19:50:15: 31000000 INFO @ Tue, 27 Jun 2017 19:50:15: 31000000 INFO @ Tue, 27 Jun 2017 19:50:18: 32000000 INFO @ Tue, 27 Jun 2017 19:50:22: 32000000 INFO @ Tue, 27 Jun 2017 19:50:22: 32000000 INFO @ Tue, 27 Jun 2017 19:50:24: 33000000 INFO @ Tue, 27 Jun 2017 19:50:28: 33000000 INFO @ Tue, 27 Jun 2017 19:50:28: 33000000 INFO @ Tue, 27 Jun 2017 19:50:31: 34000000 INFO @ Tue, 27 Jun 2017 19:50:35: 34000000 INFO @ Tue, 27 Jun 2017 19:50:35: 34000000 INFO @ Tue, 27 Jun 2017 19:50:37: 35000000 INFO @ Tue, 27 Jun 2017 19:50:41: 35000000 INFO @ Tue, 27 Jun 2017 19:50:41: 35000000 INFO @ Tue, 27 Jun 2017 19:50:43: 36000000 INFO @ Tue, 27 Jun 2017 19:50:48: 36000000 INFO @ Tue, 27 Jun 2017 19:50:48: 36000000 INFO @ Tue, 27 Jun 2017 19:50:49: 37000000 INFO @ Tue, 27 Jun 2017 19:50:54: 37000000 INFO @ Tue, 27 Jun 2017 19:50:54: 37000000 INFO @ Tue, 27 Jun 2017 19:50:56: 38000000 INFO @ Tue, 27 Jun 2017 19:51:01: 38000000 INFO @ Tue, 27 Jun 2017 19:51:01: 38000000 INFO @ Tue, 27 Jun 2017 19:51:02: 39000000 INFO @ Tue, 27 Jun 2017 19:51:07: 39000000 INFO @ Tue, 27 Jun 2017 19:51:07: 39000000 INFO @ Tue, 27 Jun 2017 19:51:08: 40000000 INFO @ Tue, 27 Jun 2017 19:51:14: 40000000 INFO @ Tue, 27 Jun 2017 19:51:14: 40000000 INFO @ Tue, 27 Jun 2017 19:51:14: 41000000 INFO @ Tue, 27 Jun 2017 19:51:20: 41000000 INFO @ Tue, 27 Jun 2017 19:51:20: 41000000 INFO @ Tue, 27 Jun 2017 19:51:21: 42000000 INFO @ Tue, 27 Jun 2017 19:51:26: 42000000 INFO @ Tue, 27 Jun 2017 19:51:26: 42000000 INFO @ Tue, 27 Jun 2017 19:51:27: 43000000 INFO @ Tue, 27 Jun 2017 19:51:33: 43000000 INFO @ Tue, 27 Jun 2017 19:51:33: 43000000 INFO @ Tue, 27 Jun 2017 19:51:33: 44000000 INFO @ Tue, 27 Jun 2017 19:51:39: 44000000 INFO @ Tue, 27 Jun 2017 19:51:39: 44000000 INFO @ Tue, 27 Jun 2017 19:51:40: 45000000 INFO @ Tue, 27 Jun 2017 19:51:46: 45000000 INFO @ Tue, 27 Jun 2017 19:51:46: 45000000 INFO @ Tue, 27 Jun 2017 19:51:46: 46000000 INFO @ Tue, 27 Jun 2017 19:51:52: 46000000 INFO @ Tue, 27 Jun 2017 19:51:52: 46000000 INFO @ Tue, 27 Jun 2017 19:51:53: 47000000 INFO @ Tue, 27 Jun 2017 19:51:59: 47000000 INFO @ Tue, 27 Jun 2017 19:51:59: 47000000 INFO @ Tue, 27 Jun 2017 19:51:59: 48000000 INFO @ Tue, 27 Jun 2017 19:52:05: 48000000 INFO @ Tue, 27 Jun 2017 19:52:05: 48000000 INFO @ Tue, 27 Jun 2017 19:52:06: 49000000 INFO @ Tue, 27 Jun 2017 19:52:12: 49000000 INFO @ Tue, 27 Jun 2017 19:52:12: 49000000 INFO @ Tue, 27 Jun 2017 19:52:12: 50000000 INFO @ Tue, 27 Jun 2017 19:52:18: 50000000 INFO @ Tue, 27 Jun 2017 19:52:18: 50000000 INFO @ Tue, 27 Jun 2017 19:52:18: 51000000 INFO @ Tue, 27 Jun 2017 19:52:25: 51000000 INFO @ Tue, 27 Jun 2017 19:52:25: 51000000 INFO @ Tue, 27 Jun 2017 19:52:25: 52000000 INFO @ Tue, 27 Jun 2017 19:52:31: 52000000 INFO @ Tue, 27 Jun 2017 19:52:31: 52000000 INFO @ Tue, 27 Jun 2017 19:52:31: 53000000 INFO @ Tue, 27 Jun 2017 19:52:38: 53000000 INFO @ Tue, 27 Jun 2017 19:52:38: 53000000 INFO @ Tue, 27 Jun 2017 19:52:38: 54000000 INFO @ Tue, 27 Jun 2017 19:52:44: 54000000 INFO @ Tue, 27 Jun 2017 19:52:44: 54000000 INFO @ Tue, 27 Jun 2017 19:52:44: 55000000 INFO @ Tue, 27 Jun 2017 19:52:50: 55000000 INFO @ Tue, 27 Jun 2017 19:52:50: 55000000 INFO @ Tue, 27 Jun 2017 19:52:50: 56000000 INFO @ Tue, 27 Jun 2017 19:52:57: 56000000 INFO @ Tue, 27 Jun 2017 19:52:57: 56000000 INFO @ Tue, 27 Jun 2017 19:52:57: 57000000 INFO @ Tue, 27 Jun 2017 19:53:03: 58000000 INFO @ Tue, 27 Jun 2017 19:53:03: 57000000 INFO @ Tue, 27 Jun 2017 19:53:03: 57000000 INFO @ Tue, 27 Jun 2017 19:53:10: 59000000 INFO @ Tue, 27 Jun 2017 19:53:10: 58000000 INFO @ Tue, 27 Jun 2017 19:53:10: 58000000 INFO @ Tue, 27 Jun 2017 19:53:16: 60000000 INFO @ Tue, 27 Jun 2017 19:53:16: 59000000 INFO @ Tue, 27 Jun 2017 19:53:16: 59000000 INFO @ Tue, 27 Jun 2017 19:53:22: 61000000 INFO @ Tue, 27 Jun 2017 19:53:23: 60000000 INFO @ Tue, 27 Jun 2017 19:53:23: 60000000 INFO @ Tue, 27 Jun 2017 19:53:29: 62000000 INFO @ Tue, 27 Jun 2017 19:53:29: 61000000 INFO @ Tue, 27 Jun 2017 19:53:29: 61000000 INFO @ Tue, 27 Jun 2017 19:53:35: 63000000 INFO @ Tue, 27 Jun 2017 19:53:36: 62000000 INFO @ Tue, 27 Jun 2017 19:53:36: 62000000 INFO @ Tue, 27 Jun 2017 19:53:36: #1 tag size is determined as 49 bps INFO @ Tue, 27 Jun 2017 19:53:36: #1 tag size = 49 INFO @ Tue, 27 Jun 2017 19:53:36: #1 total tags in treatment: 63045407 INFO @ Tue, 27 Jun 2017 19:53:36: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 19:53:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 19:53:38: #1 tags after filtering in treatment: 63045407 INFO @ Tue, 27 Jun 2017 19:53:38: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 19:53:38: #1 finished! INFO @ Tue, 27 Jun 2017 19:53:38: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 19:53:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 19:53:41: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 19:53:41: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 19:53:41: Process for pairing-model is terminated! cat: SRX1847040.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1847040.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1847040.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1847040.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Tue, 27 Jun 2017 19:53:42: 63000000 INFO @ Tue, 27 Jun 2017 19:53:42: 63000000 INFO @ Tue, 27 Jun 2017 19:53:43: #1 tag size is determined as 49 bps INFO @ Tue, 27 Jun 2017 19:53:43: #1 tag size is determined as 49 bps INFO @ Tue, 27 Jun 2017 19:53:43: #1 tag size = 49 INFO @ Tue, 27 Jun 2017 19:53:43: #1 tag size = 49 INFO @ Tue, 27 Jun 2017 19:53:43: #1 total tags in treatment: 63045407 INFO @ Tue, 27 Jun 2017 19:53:43: #1 total tags in treatment: 63045407 INFO @ Tue, 27 Jun 2017 19:53:43: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 19:53:43: #1 user defined the maximum tags... INFO @ Tue, 27 Jun 2017 19:53:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 19:53:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 27 Jun 2017 19:53:44: #1 tags after filtering in treatment: 63045407 INFO @ Tue, 27 Jun 2017 19:53:44: #1 tags after filtering in treatment: 63045407 INFO @ Tue, 27 Jun 2017 19:53:44: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 19:53:44: #1 Redundant rate of treatment: 0.00 INFO @ Tue, 27 Jun 2017 19:53:44: #1 finished! INFO @ Tue, 27 Jun 2017 19:53:44: #1 finished! INFO @ Tue, 27 Jun 2017 19:53:44: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 19:53:44: #2 Build Peak Model... INFO @ Tue, 27 Jun 2017 19:53:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 19:53:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 27 Jun 2017 19:53:48: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 19:53:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 19:53:48: Process for pairing-model is terminated! cat: SRX1847040.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) INFO @ Tue, 27 Jun 2017 19:53:48: #2 number of paired peaks: 0 WARNING @ Tue, 27 Jun 2017 19:53:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Tue, 27 Jun 2017 19:53:48: Process for pairing-model is terminated! rm: cannot remove `SRX1847040.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1847040.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1847040.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling cat: SRX1847040.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX1847040.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1847040.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX1847040.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。