Job ID = 16437482 SRX = SRX14339041 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 110229121 spots for SRR18192455/SRR18192455.sra Written 110229121 spots for SRR18192455/SRR18192455.sra fastq に変換しました。 bowtie でマッピング中... Your job 16439133 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:35:24 110229121 reads; of these: 110229121 (100.00%) were paired; of these: 44394670 (40.27%) aligned concordantly 0 times 55292078 (50.16%) aligned concordantly exactly 1 time 10542373 (9.56%) aligned concordantly >1 times ---- 44394670 pairs aligned concordantly 0 times; of these: 7709780 (17.37%) aligned discordantly 1 time ---- 36684890 pairs aligned 0 times concordantly or discordantly; of these: 73369780 mates make up the pairs; of these: 68180265 (92.93%) aligned 0 times 2691982 (3.67%) aligned exactly 1 time 2497533 (3.40%) aligned >1 times 69.07% overall alignment rate Time searching: 01:35:25 Overall time: 01:35:25 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 64 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 50622253 / 72867738 = 0.6947 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:47:29: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:47:29: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:47:29: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:47:34: 1000000 INFO @ Tue, 02 Aug 2022 14:47:39: 2000000 INFO @ Tue, 02 Aug 2022 14:47:45: 3000000 INFO @ Tue, 02 Aug 2022 14:47:50: 4000000 INFO @ Tue, 02 Aug 2022 14:47:55: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:47:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:47:58: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:47:58: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:48:01: 6000000 INFO @ Tue, 02 Aug 2022 14:48:04: 1000000 INFO @ Tue, 02 Aug 2022 14:48:07: 7000000 INFO @ Tue, 02 Aug 2022 14:48:10: 2000000 INFO @ Tue, 02 Aug 2022 14:48:13: 8000000 INFO @ Tue, 02 Aug 2022 14:48:16: 3000000 INFO @ Tue, 02 Aug 2022 14:48:19: 9000000 INFO @ Tue, 02 Aug 2022 14:48:22: 4000000 INFO @ Tue, 02 Aug 2022 14:48:25: 10000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:48:27: 5000000 INFO @ Tue, 02 Aug 2022 14:48:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:48:28: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:48:28: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:48:31: 11000000 INFO @ Tue, 02 Aug 2022 14:48:34: 6000000 INFO @ Tue, 02 Aug 2022 14:48:35: 1000000 INFO @ Tue, 02 Aug 2022 14:48:38: 12000000 INFO @ Tue, 02 Aug 2022 14:48:41: 7000000 INFO @ Tue, 02 Aug 2022 14:48:42: 2000000 INFO @ Tue, 02 Aug 2022 14:48:45: 13000000 INFO @ Tue, 02 Aug 2022 14:48:48: 8000000 INFO @ Tue, 02 Aug 2022 14:48:49: 3000000 INFO @ Tue, 02 Aug 2022 14:48:52: 14000000 INFO @ Tue, 02 Aug 2022 14:48:54: 9000000 INFO @ Tue, 02 Aug 2022 14:48:56: 4000000 INFO @ Tue, 02 Aug 2022 14:48:58: 15000000 INFO @ Tue, 02 Aug 2022 14:49:01: 10000000 INFO @ Tue, 02 Aug 2022 14:49:03: 5000000 INFO @ Tue, 02 Aug 2022 14:49:05: 16000000 INFO @ Tue, 02 Aug 2022 14:49:08: 11000000 INFO @ Tue, 02 Aug 2022 14:49:10: 6000000 INFO @ Tue, 02 Aug 2022 14:49:12: 17000000 INFO @ Tue, 02 Aug 2022 14:49:14: 12000000 INFO @ Tue, 02 Aug 2022 14:49:17: 7000000 INFO @ Tue, 02 Aug 2022 14:49:19: 18000000 INFO @ Tue, 02 Aug 2022 14:49:21: 13000000 INFO @ Tue, 02 Aug 2022 14:49:24: 8000000 INFO @ Tue, 02 Aug 2022 14:49:25: 19000000 INFO @ Tue, 02 Aug 2022 14:49:28: 14000000 INFO @ Tue, 02 Aug 2022 14:49:31: 9000000 INFO @ Tue, 02 Aug 2022 14:49:32: 20000000 INFO @ Tue, 02 Aug 2022 14:49:35: 15000000 INFO @ Tue, 02 Aug 2022 14:49:38: 10000000 INFO @ Tue, 02 Aug 2022 14:49:39: 21000000 INFO @ Tue, 02 Aug 2022 14:49:41: 16000000 INFO @ Tue, 02 Aug 2022 14:49:45: 11000000 INFO @ Tue, 02 Aug 2022 14:49:45: 22000000 INFO @ Tue, 02 Aug 2022 14:49:48: 17000000 INFO @ Tue, 02 Aug 2022 14:49:52: 12000000 INFO @ Tue, 02 Aug 2022 14:49:52: 23000000 INFO @ Tue, 02 Aug 2022 14:49:55: 18000000 INFO @ Tue, 02 Aug 2022 14:49:59: 24000000 INFO @ Tue, 02 Aug 2022 14:49:59: 13000000 INFO @ Tue, 02 Aug 2022 14:50:02: 19000000 INFO @ Tue, 02 Aug 2022 14:50:06: 25000000 INFO @ Tue, 02 Aug 2022 14:50:06: 14000000 INFO @ Tue, 02 Aug 2022 14:50:08: 20000000 INFO @ Tue, 02 Aug 2022 14:50:12: 26000000 INFO @ Tue, 02 Aug 2022 14:50:13: 15000000 INFO @ Tue, 02 Aug 2022 14:50:15: 21000000 INFO @ Tue, 02 Aug 2022 14:50:19: 27000000 INFO @ Tue, 02 Aug 2022 14:50:20: 16000000 INFO @ Tue, 02 Aug 2022 14:50:22: 22000000 INFO @ Tue, 02 Aug 2022 14:50:26: 28000000 INFO @ Tue, 02 Aug 2022 14:50:27: 17000000 INFO @ Tue, 02 Aug 2022 14:50:28: 23000000 INFO @ Tue, 02 Aug 2022 14:50:32: 29000000 INFO @ Tue, 02 Aug 2022 14:50:34: 18000000 INFO @ Tue, 02 Aug 2022 14:50:35: 24000000 INFO @ Tue, 02 Aug 2022 14:50:39: 30000000 INFO @ Tue, 02 Aug 2022 14:50:41: 19000000 INFO @ Tue, 02 Aug 2022 14:50:42: 25000000 INFO @ Tue, 02 Aug 2022 14:50:46: 31000000 INFO @ Tue, 02 Aug 2022 14:50:48: 20000000 INFO @ Tue, 02 Aug 2022 14:50:48: 26000000 INFO @ Tue, 02 Aug 2022 14:50:52: 32000000 INFO @ Tue, 02 Aug 2022 14:50:55: 27000000 INFO @ Tue, 02 Aug 2022 14:50:55: 21000000 INFO @ Tue, 02 Aug 2022 14:50:59: 33000000 INFO @ Tue, 02 Aug 2022 14:51:01: 28000000 INFO @ Tue, 02 Aug 2022 14:51:02: 22000000 INFO @ Tue, 02 Aug 2022 14:51:05: 34000000 INFO @ Tue, 02 Aug 2022 14:51:08: 29000000 INFO @ Tue, 02 Aug 2022 14:51:09: 23000000 INFO @ Tue, 02 Aug 2022 14:51:12: 35000000 INFO @ Tue, 02 Aug 2022 14:51:15: 30000000 INFO @ Tue, 02 Aug 2022 14:51:16: 24000000 INFO @ Tue, 02 Aug 2022 14:51:19: 36000000 INFO @ Tue, 02 Aug 2022 14:51:21: 31000000 INFO @ Tue, 02 Aug 2022 14:51:23: 25000000 INFO @ Tue, 02 Aug 2022 14:51:25: 37000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 14:51:28: 32000000 INFO @ Tue, 02 Aug 2022 14:51:30: 26000000 INFO @ Tue, 02 Aug 2022 14:51:32: 38000000 INFO @ Tue, 02 Aug 2022 14:51:34: 33000000 INFO @ Tue, 02 Aug 2022 14:51:37: 27000000 INFO @ Tue, 02 Aug 2022 14:51:39: 39000000 INFO @ Tue, 02 Aug 2022 14:51:41: 34000000 INFO @ Tue, 02 Aug 2022 14:51:45: 28000000 INFO @ Tue, 02 Aug 2022 14:51:45: 40000000 INFO @ Tue, 02 Aug 2022 14:51:48: 35000000 INFO @ Tue, 02 Aug 2022 14:51:52: 29000000 INFO @ Tue, 02 Aug 2022 14:51:52: 41000000 INFO @ Tue, 02 Aug 2022 14:51:54: 36000000 INFO @ Tue, 02 Aug 2022 14:51:59: 30000000 INFO @ Tue, 02 Aug 2022 14:51:59: 42000000 INFO @ Tue, 02 Aug 2022 14:52:01: 37000000 INFO @ Tue, 02 Aug 2022 14:52:05: 43000000 INFO @ Tue, 02 Aug 2022 14:52:06: 31000000 INFO @ Tue, 02 Aug 2022 14:52:08: 38000000 INFO @ Tue, 02 Aug 2022 14:52:12: 44000000 INFO @ Tue, 02 Aug 2022 14:52:13: 32000000 INFO @ Tue, 02 Aug 2022 14:52:15: 39000000 INFO @ Tue, 02 Aug 2022 14:52:19: 45000000 INFO @ Tue, 02 Aug 2022 14:52:19: 33000000 INFO @ Tue, 02 Aug 2022 14:52:21: 40000000 INFO @ Tue, 02 Aug 2022 14:52:25: 46000000 INFO @ Tue, 02 Aug 2022 14:52:26: 34000000 INFO @ Tue, 02 Aug 2022 14:52:28: 41000000 INFO @ Tue, 02 Aug 2022 14:52:32: 47000000 INFO @ Tue, 02 Aug 2022 14:52:33: 35000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 14:52:35: 42000000 INFO @ Tue, 02 Aug 2022 14:52:39: 48000000 INFO @ Tue, 02 Aug 2022 14:52:41: 36000000 INFO @ Tue, 02 Aug 2022 14:52:41: 43000000 INFO @ Tue, 02 Aug 2022 14:52:45: 49000000 INFO @ Tue, 02 Aug 2022 14:52:48: 37000000 INFO @ Tue, 02 Aug 2022 14:52:48: 44000000 INFO @ Tue, 02 Aug 2022 14:52:52: 50000000 INFO @ Tue, 02 Aug 2022 14:52:54: 45000000 INFO @ Tue, 02 Aug 2022 14:52:55: 38000000 INFO @ Tue, 02 Aug 2022 14:52:58: 51000000 INFO @ Tue, 02 Aug 2022 14:52:59: #1 tag size is determined as 51 bps INFO @ Tue, 02 Aug 2022 14:52:59: #1 tag size = 51 INFO @ Tue, 02 Aug 2022 14:52:59: #1 total tags in treatment: 19994973 INFO @ Tue, 02 Aug 2022 14:52:59: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:52:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:52:59: #1 tags after filtering in treatment: 14311415 INFO @ Tue, 02 Aug 2022 14:52:59: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 02 Aug 2022 14:52:59: #1 finished! INFO @ Tue, 02 Aug 2022 14:52:59: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:52:59: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:53:00: #2 number of paired peaks: 218 WARNING @ Tue, 02 Aug 2022 14:53:00: Fewer paired peaks (218) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 218 pairs to build model! INFO @ Tue, 02 Aug 2022 14:53:00: start model_add_line... INFO @ Tue, 02 Aug 2022 14:53:00: start X-correlation... INFO @ Tue, 02 Aug 2022 14:53:00: end of X-cor INFO @ Tue, 02 Aug 2022 14:53:00: #2 finished! INFO @ Tue, 02 Aug 2022 14:53:00: #2 predicted fragment length is 74 bps INFO @ Tue, 02 Aug 2022 14:53:00: #2 alternative fragment length(s) may be 74 bps INFO @ Tue, 02 Aug 2022 14:53:00: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.05_model.r WARNING @ Tue, 02 Aug 2022 14:53:00: #2 Since the d (74) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:53:00: #2 You may need to consider one of the other alternative d(s): 74 WARNING @ Tue, 02 Aug 2022 14:53:00: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:53:00: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:53:00: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:53:01: 46000000 INFO @ Tue, 02 Aug 2022 14:53:02: 39000000 INFO @ Tue, 02 Aug 2022 14:53:07: 47000000 INFO @ Tue, 02 Aug 2022 14:53:09: 40000000 INFO @ Tue, 02 Aug 2022 14:53:13: 48000000 INFO @ Tue, 02 Aug 2022 14:53:16: 41000000 INFO @ Tue, 02 Aug 2022 14:53:20: 49000000 INFO @ Tue, 02 Aug 2022 14:53:23: 42000000 INFO @ Tue, 02 Aug 2022 14:53:26: 50000000 INFO @ Tue, 02 Aug 2022 14:53:27: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:53:30: 43000000 INFO @ Tue, 02 Aug 2022 14:53:32: 51000000 INFO @ Tue, 02 Aug 2022 14:53:32: #1 tag size is determined as 51 bps INFO @ Tue, 02 Aug 2022 14:53:32: #1 tag size = 51 INFO @ Tue, 02 Aug 2022 14:53:32: #1 total tags in treatment: 19994973 INFO @ Tue, 02 Aug 2022 14:53:32: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:53:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:53:33: #1 tags after filtering in treatment: 14311415 INFO @ Tue, 02 Aug 2022 14:53:33: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 02 Aug 2022 14:53:33: #1 finished! INFO @ Tue, 02 Aug 2022 14:53:33: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:53:33: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:53:34: #2 number of paired peaks: 218 WARNING @ Tue, 02 Aug 2022 14:53:34: Fewer paired peaks (218) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 218 pairs to build model! INFO @ Tue, 02 Aug 2022 14:53:34: start model_add_line... INFO @ Tue, 02 Aug 2022 14:53:34: start X-correlation... INFO @ Tue, 02 Aug 2022 14:53:34: end of X-cor INFO @ Tue, 02 Aug 2022 14:53:34: #2 finished! INFO @ Tue, 02 Aug 2022 14:53:34: #2 predicted fragment length is 74 bps INFO @ Tue, 02 Aug 2022 14:53:34: #2 alternative fragment length(s) may be 74 bps INFO @ Tue, 02 Aug 2022 14:53:34: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.10_model.r WARNING @ Tue, 02 Aug 2022 14:53:34: #2 Since the d (74) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:53:34: #2 You may need to consider one of the other alternative d(s): 74 WARNING @ Tue, 02 Aug 2022 14:53:34: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:53:34: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:53:34: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:53:36: 44000000 INFO @ Tue, 02 Aug 2022 14:53:42: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.05_peaks.xls INFO @ Tue, 02 Aug 2022 14:53:42: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:53:42: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.05_summits.bed INFO @ Tue, 02 Aug 2022 14:53:42: Done! pass1 - making usageList (15 chroms): 2 millis INFO @ Tue, 02 Aug 2022 14:53:43: 45000000 pass2 - checking and writing primary data (12520 records, 4 fields): 61 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 14:53:49: 46000000 INFO @ Tue, 02 Aug 2022 14:53:55: 47000000 INFO @ Tue, 02 Aug 2022 14:54:02: 48000000 INFO @ Tue, 02 Aug 2022 14:54:03: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:54:08: 49000000 INFO @ Tue, 02 Aug 2022 14:54:15: 50000000 INFO @ Tue, 02 Aug 2022 14:54:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.10_peaks.xls INFO @ Tue, 02 Aug 2022 14:54:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:54:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.10_summits.bed INFO @ Tue, 02 Aug 2022 14:54:18: Done! pass1 - making usageList (15 chroms): 1 millis pass2 - checking and writing primary data (4688 records, 4 fields): 26 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 14:54:21: 51000000 INFO @ Tue, 02 Aug 2022 14:54:21: #1 tag size is determined as 51 bps INFO @ Tue, 02 Aug 2022 14:54:21: #1 tag size = 51 INFO @ Tue, 02 Aug 2022 14:54:21: #1 total tags in treatment: 19994973 INFO @ Tue, 02 Aug 2022 14:54:21: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:54:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:54:21: #1 tags after filtering in treatment: 14311415 INFO @ Tue, 02 Aug 2022 14:54:21: #1 Redundant rate of treatment: 0.28 INFO @ Tue, 02 Aug 2022 14:54:21: #1 finished! INFO @ Tue, 02 Aug 2022 14:54:21: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:54:21: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:54:22: #2 number of paired peaks: 218 WARNING @ Tue, 02 Aug 2022 14:54:22: Fewer paired peaks (218) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 218 pairs to build model! INFO @ Tue, 02 Aug 2022 14:54:22: start model_add_line... INFO @ Tue, 02 Aug 2022 14:54:22: start X-correlation... INFO @ Tue, 02 Aug 2022 14:54:23: end of X-cor INFO @ Tue, 02 Aug 2022 14:54:23: #2 finished! INFO @ Tue, 02 Aug 2022 14:54:23: #2 predicted fragment length is 74 bps INFO @ Tue, 02 Aug 2022 14:54:23: #2 alternative fragment length(s) may be 74 bps INFO @ Tue, 02 Aug 2022 14:54:23: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.20_model.r WARNING @ Tue, 02 Aug 2022 14:54:23: #2 Since the d (74) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:54:23: #2 You may need to consider one of the other alternative d(s): 74 WARNING @ Tue, 02 Aug 2022 14:54:23: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:54:23: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:54:23: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:54:50: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:55:04: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.20_peaks.xls INFO @ Tue, 02 Aug 2022 14:55:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:55:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX14339041/SRX14339041.20_summits.bed INFO @ Tue, 02 Aug 2022 14:55:05: Done! pass1 - making usageList (11 chroms): 0 millis pass2 - checking and writing primary data (675 records, 4 fields): 23 millis CompletedMACS2peakCalling