Job ID = 16439993 SRX = SRX13386235 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 64749319 spots for SRR17206318/SRR17206318.sra Written 64749319 spots for SRR17206318/SRR17206318.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441198 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:14:20 64749319 reads; of these: 64749319 (100.00%) were paired; of these: 2798567 (4.32%) aligned concordantly 0 times 51130300 (78.97%) aligned concordantly exactly 1 time 10820452 (16.71%) aligned concordantly >1 times ---- 2798567 pairs aligned concordantly 0 times; of these: 65528 (2.34%) aligned discordantly 1 time ---- 2733039 pairs aligned 0 times concordantly or discordantly; of these: 5466078 mates make up the pairs; of these: 3831278 (70.09%) aligned 0 times 1290075 (23.60%) aligned exactly 1 time 344725 (6.31%) aligned >1 times 97.04% overall alignment rate Time searching: 02:14:21 Overall time: 02:14:21 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 52 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 37416240 / 61998227 = 0.6035 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:21:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:21:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:21:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:21:11: 1000000 INFO @ Tue, 02 Aug 2022 19:21:18: 2000000 INFO @ Tue, 02 Aug 2022 19:21:24: 3000000 INFO @ Tue, 02 Aug 2022 19:21:30: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:21:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:21:34: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:21:34: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:21:36: 5000000 INFO @ Tue, 02 Aug 2022 19:21:40: 1000000 INFO @ Tue, 02 Aug 2022 19:21:43: 6000000 INFO @ Tue, 02 Aug 2022 19:21:47: 2000000 INFO @ Tue, 02 Aug 2022 19:21:49: 7000000 INFO @ Tue, 02 Aug 2022 19:21:53: 3000000 INFO @ Tue, 02 Aug 2022 19:21:56: 8000000 INFO @ Tue, 02 Aug 2022 19:22:00: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:22:03: 9000000 INFO @ Tue, 02 Aug 2022 19:22:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:22:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:22:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:22:06: 5000000 INFO @ Tue, 02 Aug 2022 19:22:09: 10000000 INFO @ Tue, 02 Aug 2022 19:22:12: 1000000 INFO @ Tue, 02 Aug 2022 19:22:13: 6000000 INFO @ Tue, 02 Aug 2022 19:22:16: 11000000 INFO @ Tue, 02 Aug 2022 19:22:19: 2000000 INFO @ Tue, 02 Aug 2022 19:22:19: 7000000 INFO @ Tue, 02 Aug 2022 19:22:23: 12000000 INFO @ Tue, 02 Aug 2022 19:22:25: 3000000 INFO @ Tue, 02 Aug 2022 19:22:26: 8000000 INFO @ Tue, 02 Aug 2022 19:22:29: 13000000 INFO @ Tue, 02 Aug 2022 19:22:32: 4000000 INFO @ Tue, 02 Aug 2022 19:22:32: 9000000 INFO @ Tue, 02 Aug 2022 19:22:36: 14000000 INFO @ Tue, 02 Aug 2022 19:22:38: 10000000 INFO @ Tue, 02 Aug 2022 19:22:38: 5000000 INFO @ Tue, 02 Aug 2022 19:22:43: 15000000 INFO @ Tue, 02 Aug 2022 19:22:45: 11000000 INFO @ Tue, 02 Aug 2022 19:22:45: 6000000 INFO @ Tue, 02 Aug 2022 19:22:49: 16000000 INFO @ Tue, 02 Aug 2022 19:22:51: 12000000 INFO @ Tue, 02 Aug 2022 19:22:52: 7000000 INFO @ Tue, 02 Aug 2022 19:22:56: 17000000 INFO @ Tue, 02 Aug 2022 19:22:58: 13000000 INFO @ Tue, 02 Aug 2022 19:22:58: 8000000 INFO @ Tue, 02 Aug 2022 19:23:03: 18000000 INFO @ Tue, 02 Aug 2022 19:23:04: 14000000 INFO @ Tue, 02 Aug 2022 19:23:05: 9000000 INFO @ Tue, 02 Aug 2022 19:23:10: 19000000 INFO @ Tue, 02 Aug 2022 19:23:11: 15000000 INFO @ Tue, 02 Aug 2022 19:23:11: 10000000 INFO @ Tue, 02 Aug 2022 19:23:16: 20000000 INFO @ Tue, 02 Aug 2022 19:23:17: 16000000 INFO @ Tue, 02 Aug 2022 19:23:18: 11000000 INFO @ Tue, 02 Aug 2022 19:23:23: 21000000 INFO @ Tue, 02 Aug 2022 19:23:24: 17000000 INFO @ Tue, 02 Aug 2022 19:23:25: 12000000 INFO @ Tue, 02 Aug 2022 19:23:29: 22000000 INFO @ Tue, 02 Aug 2022 19:23:30: 18000000 INFO @ Tue, 02 Aug 2022 19:23:31: 13000000 INFO @ Tue, 02 Aug 2022 19:23:36: 23000000 INFO @ Tue, 02 Aug 2022 19:23:37: 19000000 INFO @ Tue, 02 Aug 2022 19:23:38: 14000000 INFO @ Tue, 02 Aug 2022 19:23:43: 24000000 INFO @ Tue, 02 Aug 2022 19:23:43: 20000000 INFO @ Tue, 02 Aug 2022 19:23:44: 15000000 INFO @ Tue, 02 Aug 2022 19:23:49: 25000000 INFO @ Tue, 02 Aug 2022 19:23:50: 21000000 INFO @ Tue, 02 Aug 2022 19:23:51: 16000000 INFO @ Tue, 02 Aug 2022 19:23:56: 26000000 INFO @ Tue, 02 Aug 2022 19:23:56: 22000000 INFO @ Tue, 02 Aug 2022 19:23:58: 17000000 INFO @ Tue, 02 Aug 2022 19:24:02: 27000000 INFO @ Tue, 02 Aug 2022 19:24:03: 23000000 INFO @ Tue, 02 Aug 2022 19:24:04: 18000000 INFO @ Tue, 02 Aug 2022 19:24:09: 28000000 INFO @ Tue, 02 Aug 2022 19:24:09: 24000000 INFO @ Tue, 02 Aug 2022 19:24:11: 19000000 INFO @ Tue, 02 Aug 2022 19:24:16: 29000000 INFO @ Tue, 02 Aug 2022 19:24:16: 25000000 INFO @ Tue, 02 Aug 2022 19:24:17: 20000000 INFO @ Tue, 02 Aug 2022 19:24:22: 30000000 INFO @ Tue, 02 Aug 2022 19:24:22: 26000000 INFO @ Tue, 02 Aug 2022 19:24:24: 21000000 INFO @ Tue, 02 Aug 2022 19:24:29: 31000000 INFO @ Tue, 02 Aug 2022 19:24:29: 27000000 INFO @ Tue, 02 Aug 2022 19:24:30: 22000000 INFO @ Tue, 02 Aug 2022 19:24:35: 32000000 INFO @ Tue, 02 Aug 2022 19:24:36: 28000000 INFO @ Tue, 02 Aug 2022 19:24:37: 23000000 INFO @ Tue, 02 Aug 2022 19:24:42: 33000000 INFO @ Tue, 02 Aug 2022 19:24:43: 29000000 INFO @ Tue, 02 Aug 2022 19:24:44: 24000000 INFO @ Tue, 02 Aug 2022 19:24:49: 34000000 INFO @ Tue, 02 Aug 2022 19:24:49: 30000000 INFO @ Tue, 02 Aug 2022 19:24:51: 25000000 INFO @ Tue, 02 Aug 2022 19:24:55: 35000000 INFO @ Tue, 02 Aug 2022 19:24:56: 31000000 INFO @ Tue, 02 Aug 2022 19:24:58: 26000000 INFO @ Tue, 02 Aug 2022 19:25:02: 36000000 INFO @ Tue, 02 Aug 2022 19:25:02: 32000000 INFO @ Tue, 02 Aug 2022 19:25:04: 27000000 INFO @ Tue, 02 Aug 2022 19:25:08: 37000000 INFO @ Tue, 02 Aug 2022 19:25:09: 33000000 INFO @ Tue, 02 Aug 2022 19:25:11: 28000000 INFO @ Tue, 02 Aug 2022 19:25:15: 38000000 INFO @ Tue, 02 Aug 2022 19:25:15: 34000000 INFO @ Tue, 02 Aug 2022 19:25:18: 29000000 INFO @ Tue, 02 Aug 2022 19:25:22: 39000000 INFO @ Tue, 02 Aug 2022 19:25:22: 35000000 INFO @ Tue, 02 Aug 2022 19:25:24: 30000000 INFO @ Tue, 02 Aug 2022 19:25:28: 40000000 INFO @ Tue, 02 Aug 2022 19:25:28: 36000000 INFO @ Tue, 02 Aug 2022 19:25:31: 31000000 INFO @ Tue, 02 Aug 2022 19:25:35: 41000000 INFO @ Tue, 02 Aug 2022 19:25:35: 37000000 INFO @ Tue, 02 Aug 2022 19:25:38: 32000000 INFO @ Tue, 02 Aug 2022 19:25:41: 42000000 INFO @ Tue, 02 Aug 2022 19:25:42: 38000000 INFO @ Tue, 02 Aug 2022 19:25:45: 33000000 INFO @ Tue, 02 Aug 2022 19:25:48: 43000000 INFO @ Tue, 02 Aug 2022 19:25:48: 39000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:25:52: 34000000 INFO @ Tue, 02 Aug 2022 19:25:55: 44000000 INFO @ Tue, 02 Aug 2022 19:25:55: 40000000 INFO @ Tue, 02 Aug 2022 19:25:58: 35000000 INFO @ Tue, 02 Aug 2022 19:26:01: 45000000 INFO @ Tue, 02 Aug 2022 19:26:01: 41000000 INFO @ Tue, 02 Aug 2022 19:26:05: 36000000 INFO @ Tue, 02 Aug 2022 19:26:08: 46000000 INFO @ Tue, 02 Aug 2022 19:26:08: 42000000 INFO @ Tue, 02 Aug 2022 19:26:12: 37000000 INFO @ Tue, 02 Aug 2022 19:26:14: 47000000 INFO @ Tue, 02 Aug 2022 19:26:15: 43000000 INFO @ Tue, 02 Aug 2022 19:26:18: 38000000 INFO @ Tue, 02 Aug 2022 19:26:21: 48000000 INFO @ Tue, 02 Aug 2022 19:26:21: 44000000 INFO @ Tue, 02 Aug 2022 19:26:25: 39000000 INFO @ Tue, 02 Aug 2022 19:26:27: 49000000 INFO @ Tue, 02 Aug 2022 19:26:28: 45000000 INFO @ Tue, 02 Aug 2022 19:26:32: 40000000 INFO @ Tue, 02 Aug 2022 19:26:34: 50000000 INFO @ Tue, 02 Aug 2022 19:26:34: 46000000 INFO @ Tue, 02 Aug 2022 19:26:39: 41000000 INFO @ Tue, 02 Aug 2022 19:26:39: #1 tag size is determined as 51 bps INFO @ Tue, 02 Aug 2022 19:26:39: #1 tag size = 51 INFO @ Tue, 02 Aug 2022 19:26:39: #1 total tags in treatment: 24562219 INFO @ Tue, 02 Aug 2022 19:26:39: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:26:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:26:40: #1 tags after filtering in treatment: 16572339 INFO @ Tue, 02 Aug 2022 19:26:40: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 19:26:40: #1 finished! INFO @ Tue, 02 Aug 2022 19:26:40: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:26:40: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:26:41: 47000000 INFO @ Tue, 02 Aug 2022 19:26:41: #2 number of paired peaks: 606 WARNING @ Tue, 02 Aug 2022 19:26:41: Fewer paired peaks (606) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 606 pairs to build model! INFO @ Tue, 02 Aug 2022 19:26:41: start model_add_line... INFO @ Tue, 02 Aug 2022 19:26:41: start X-correlation... INFO @ Tue, 02 Aug 2022 19:26:42: end of X-cor INFO @ Tue, 02 Aug 2022 19:26:42: #2 finished! INFO @ Tue, 02 Aug 2022 19:26:42: #2 predicted fragment length is 128 bps INFO @ Tue, 02 Aug 2022 19:26:42: #2 alternative fragment length(s) may be 4,128 bps INFO @ Tue, 02 Aug 2022 19:26:42: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.05_model.r INFO @ Tue, 02 Aug 2022 19:26:42: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:26:42: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:26:45: 42000000 INFO @ Tue, 02 Aug 2022 19:26:47: 48000000 INFO @ Tue, 02 Aug 2022 19:26:52: 43000000 INFO @ Tue, 02 Aug 2022 19:26:53: 49000000 INFO @ Tue, 02 Aug 2022 19:26:59: 44000000 INFO @ Tue, 02 Aug 2022 19:27:00: 50000000 INFO @ Tue, 02 Aug 2022 19:27:05: #1 tag size is determined as 51 bps INFO @ Tue, 02 Aug 2022 19:27:05: #1 tag size = 51 INFO @ Tue, 02 Aug 2022 19:27:05: #1 total tags in treatment: 24562219 INFO @ Tue, 02 Aug 2022 19:27:05: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:27:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:27:05: 45000000 INFO @ Tue, 02 Aug 2022 19:27:06: #1 tags after filtering in treatment: 16572339 INFO @ Tue, 02 Aug 2022 19:27:06: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 19:27:06: #1 finished! INFO @ Tue, 02 Aug 2022 19:27:06: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:27:06: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:27:07: #2 number of paired peaks: 606 WARNING @ Tue, 02 Aug 2022 19:27:07: Fewer paired peaks (606) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 606 pairs to build model! INFO @ Tue, 02 Aug 2022 19:27:07: start model_add_line... INFO @ Tue, 02 Aug 2022 19:27:07: start X-correlation... INFO @ Tue, 02 Aug 2022 19:27:08: end of X-cor INFO @ Tue, 02 Aug 2022 19:27:08: #2 finished! INFO @ Tue, 02 Aug 2022 19:27:08: #2 predicted fragment length is 128 bps INFO @ Tue, 02 Aug 2022 19:27:08: #2 alternative fragment length(s) may be 4,128 bps INFO @ Tue, 02 Aug 2022 19:27:08: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.10_model.r INFO @ Tue, 02 Aug 2022 19:27:08: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:27:08: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:27:12: 46000000 INFO @ Tue, 02 Aug 2022 19:27:15: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:27:18: 47000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:27:25: 48000000 INFO @ Tue, 02 Aug 2022 19:27:31: 49000000 INFO @ Tue, 02 Aug 2022 19:27:33: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:27:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:27:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.05_summits.bed INFO @ Tue, 02 Aug 2022 19:27:33: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (13291 records, 4 fields): 17 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:27:38: 50000000 INFO @ Tue, 02 Aug 2022 19:27:41: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:27:43: #1 tag size is determined as 51 bps INFO @ Tue, 02 Aug 2022 19:27:43: #1 tag size = 51 INFO @ Tue, 02 Aug 2022 19:27:43: #1 total tags in treatment: 24562219 INFO @ Tue, 02 Aug 2022 19:27:43: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:27:43: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:27:44: #1 tags after filtering in treatment: 16572339 INFO @ Tue, 02 Aug 2022 19:27:44: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 19:27:44: #1 finished! INFO @ Tue, 02 Aug 2022 19:27:44: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:27:44: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:27:45: #2 number of paired peaks: 606 WARNING @ Tue, 02 Aug 2022 19:27:45: Fewer paired peaks (606) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 606 pairs to build model! INFO @ Tue, 02 Aug 2022 19:27:45: start model_add_line... INFO @ Tue, 02 Aug 2022 19:27:45: start X-correlation... INFO @ Tue, 02 Aug 2022 19:27:45: end of X-cor INFO @ Tue, 02 Aug 2022 19:27:45: #2 finished! INFO @ Tue, 02 Aug 2022 19:27:45: #2 predicted fragment length is 128 bps INFO @ Tue, 02 Aug 2022 19:27:45: #2 alternative fragment length(s) may be 4,128 bps INFO @ Tue, 02 Aug 2022 19:27:45: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.20_model.r INFO @ Tue, 02 Aug 2022 19:27:45: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:27:45: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:27:59: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:27:59: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:27:59: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.10_summits.bed INFO @ Tue, 02 Aug 2022 19:27:59: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (8264 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:28:19: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:28:37: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:28:37: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:28:37: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX13386235/SRX13386235.20_summits.bed INFO @ Tue, 02 Aug 2022 19:28:37: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (2349 records, 4 fields): 5 millis CompletedMACS2peakCalling