Job ID = 16439764 SRX = SRX12413738 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 38514054 spots for SRR16128323/SRR16128323.sra Written 38514054 spots for SRR16128323/SRR16128323.sra fastq に変換しました。 bowtie でマッピング中... Your job 16441204 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:43:03 38514054 reads; of these: 38514054 (100.00%) were paired; of these: 3203516 (8.32%) aligned concordantly 0 times 14293277 (37.11%) aligned concordantly exactly 1 time 21017261 (54.57%) aligned concordantly >1 times ---- 3203516 pairs aligned concordantly 0 times; of these: 791832 (24.72%) aligned discordantly 1 time ---- 2411684 pairs aligned 0 times concordantly or discordantly; of these: 4823368 mates make up the pairs; of these: 2919216 (60.52%) aligned 0 times 607605 (12.60%) aligned exactly 1 time 1296547 (26.88%) aligned >1 times 96.21% overall alignment rate Time searching: 02:43:03 Overall time: 02:43:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 8535224 / 35905056 = 0.2377 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:15:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:15:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:15:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:15:13: 1000000 INFO @ Tue, 02 Aug 2022 19:15:21: 2000000 INFO @ Tue, 02 Aug 2022 19:15:28: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:15:34: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:15:34: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:15:34: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:15:36: 4000000 INFO @ Tue, 02 Aug 2022 19:15:43: 1000000 INFO @ Tue, 02 Aug 2022 19:15:44: 5000000 INFO @ Tue, 02 Aug 2022 19:15:51: 2000000 INFO @ Tue, 02 Aug 2022 19:15:53: 6000000 INFO @ Tue, 02 Aug 2022 19:15:59: 3000000 INFO @ Tue, 02 Aug 2022 19:16:01: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 19:16:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 19:16:04: #1 read tag files... INFO @ Tue, 02 Aug 2022 19:16:04: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 19:16:08: 4000000 INFO @ Tue, 02 Aug 2022 19:16:09: 8000000 INFO @ Tue, 02 Aug 2022 19:16:13: 1000000 INFO @ Tue, 02 Aug 2022 19:16:16: 5000000 INFO @ Tue, 02 Aug 2022 19:16:18: 9000000 INFO @ Tue, 02 Aug 2022 19:16:21: 2000000 INFO @ Tue, 02 Aug 2022 19:16:24: 6000000 INFO @ Tue, 02 Aug 2022 19:16:27: 10000000 INFO @ Tue, 02 Aug 2022 19:16:30: 3000000 INFO @ Tue, 02 Aug 2022 19:16:32: 7000000 INFO @ Tue, 02 Aug 2022 19:16:35: 11000000 INFO @ Tue, 02 Aug 2022 19:16:38: 4000000 INFO @ Tue, 02 Aug 2022 19:16:40: 8000000 INFO @ Tue, 02 Aug 2022 19:16:44: 12000000 INFO @ Tue, 02 Aug 2022 19:16:46: 5000000 INFO @ Tue, 02 Aug 2022 19:16:48: 9000000 INFO @ Tue, 02 Aug 2022 19:16:53: 13000000 INFO @ Tue, 02 Aug 2022 19:16:54: 6000000 INFO @ Tue, 02 Aug 2022 19:16:57: 10000000 INFO @ Tue, 02 Aug 2022 19:17:01: 14000000 INFO @ Tue, 02 Aug 2022 19:17:03: 7000000 INFO @ Tue, 02 Aug 2022 19:17:05: 11000000 INFO @ Tue, 02 Aug 2022 19:17:09: 15000000 INFO @ Tue, 02 Aug 2022 19:17:11: 8000000 INFO @ Tue, 02 Aug 2022 19:17:13: 12000000 INFO @ Tue, 02 Aug 2022 19:17:18: 16000000 INFO @ Tue, 02 Aug 2022 19:17:19: 9000000 INFO @ Tue, 02 Aug 2022 19:17:21: 13000000 INFO @ Tue, 02 Aug 2022 19:17:26: 17000000 INFO @ Tue, 02 Aug 2022 19:17:27: 10000000 INFO @ Tue, 02 Aug 2022 19:17:29: 14000000 INFO @ Tue, 02 Aug 2022 19:17:35: 18000000 INFO @ Tue, 02 Aug 2022 19:17:36: 11000000 INFO @ Tue, 02 Aug 2022 19:17:37: 15000000 INFO @ Tue, 02 Aug 2022 19:17:43: 19000000 INFO @ Tue, 02 Aug 2022 19:17:44: 12000000 INFO @ Tue, 02 Aug 2022 19:17:45: 16000000 INFO @ Tue, 02 Aug 2022 19:17:51: 20000000 INFO @ Tue, 02 Aug 2022 19:17:52: 13000000 INFO @ Tue, 02 Aug 2022 19:17:54: 17000000 INFO @ Tue, 02 Aug 2022 19:17:59: 21000000 INFO @ Tue, 02 Aug 2022 19:18:00: 14000000 INFO @ Tue, 02 Aug 2022 19:18:02: 18000000 INFO @ Tue, 02 Aug 2022 19:18:08: 22000000 INFO @ Tue, 02 Aug 2022 19:18:08: 15000000 INFO @ Tue, 02 Aug 2022 19:18:10: 19000000 INFO @ Tue, 02 Aug 2022 19:18:16: 23000000 INFO @ Tue, 02 Aug 2022 19:18:16: 16000000 INFO @ Tue, 02 Aug 2022 19:18:18: 20000000 INFO @ Tue, 02 Aug 2022 19:18:24: 24000000 INFO @ Tue, 02 Aug 2022 19:18:25: 17000000 INFO @ Tue, 02 Aug 2022 19:18:26: 21000000 INFO @ Tue, 02 Aug 2022 19:18:32: 25000000 INFO @ Tue, 02 Aug 2022 19:18:33: 18000000 INFO @ Tue, 02 Aug 2022 19:18:34: 22000000 INFO @ Tue, 02 Aug 2022 19:18:41: 26000000 INFO @ Tue, 02 Aug 2022 19:18:42: 19000000 INFO @ Tue, 02 Aug 2022 19:18:43: 23000000 INFO @ Tue, 02 Aug 2022 19:18:49: 27000000 INFO @ Tue, 02 Aug 2022 19:18:50: 20000000 INFO @ Tue, 02 Aug 2022 19:18:51: 24000000 INFO @ Tue, 02 Aug 2022 19:18:57: 28000000 INFO @ Tue, 02 Aug 2022 19:18:59: 21000000 INFO @ Tue, 02 Aug 2022 19:19:00: 25000000 INFO @ Tue, 02 Aug 2022 19:19:05: 29000000 INFO @ Tue, 02 Aug 2022 19:19:07: 22000000 INFO @ Tue, 02 Aug 2022 19:19:08: 26000000 INFO @ Tue, 02 Aug 2022 19:19:14: 30000000 INFO @ Tue, 02 Aug 2022 19:19:15: 23000000 INFO @ Tue, 02 Aug 2022 19:19:17: 27000000 INFO @ Tue, 02 Aug 2022 19:19:22: 31000000 INFO @ Tue, 02 Aug 2022 19:19:24: 24000000 INFO @ Tue, 02 Aug 2022 19:19:25: 28000000 INFO @ Tue, 02 Aug 2022 19:19:30: 32000000 INFO @ Tue, 02 Aug 2022 19:19:32: 25000000 INFO @ Tue, 02 Aug 2022 19:19:34: 29000000 INFO @ Tue, 02 Aug 2022 19:19:38: 33000000 INFO @ Tue, 02 Aug 2022 19:19:41: 26000000 INFO @ Tue, 02 Aug 2022 19:19:42: 30000000 INFO @ Tue, 02 Aug 2022 19:19:46: 34000000 INFO @ Tue, 02 Aug 2022 19:19:49: 27000000 INFO @ Tue, 02 Aug 2022 19:19:51: 31000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 19:19:55: 35000000 INFO @ Tue, 02 Aug 2022 19:19:58: 28000000 INFO @ Tue, 02 Aug 2022 19:19:59: 32000000 INFO @ Tue, 02 Aug 2022 19:20:03: 36000000 INFO @ Tue, 02 Aug 2022 19:20:07: 29000000 INFO @ Tue, 02 Aug 2022 19:20:07: 33000000 INFO @ Tue, 02 Aug 2022 19:20:12: 37000000 INFO @ Tue, 02 Aug 2022 19:20:15: 30000000 INFO @ Tue, 02 Aug 2022 19:20:15: 34000000 INFO @ Tue, 02 Aug 2022 19:20:20: 38000000 INFO @ Tue, 02 Aug 2022 19:20:23: 31000000 INFO @ Tue, 02 Aug 2022 19:20:24: 35000000 INFO @ Tue, 02 Aug 2022 19:20:28: 39000000 INFO @ Tue, 02 Aug 2022 19:20:31: 32000000 INFO @ Tue, 02 Aug 2022 19:20:32: 36000000 INFO @ Tue, 02 Aug 2022 19:20:37: 40000000 INFO @ Tue, 02 Aug 2022 19:20:40: 33000000 INFO @ Tue, 02 Aug 2022 19:20:40: 37000000 INFO @ Tue, 02 Aug 2022 19:20:45: 41000000 INFO @ Tue, 02 Aug 2022 19:20:47: 34000000 INFO @ Tue, 02 Aug 2022 19:20:49: 38000000 INFO @ Tue, 02 Aug 2022 19:20:54: 42000000 INFO @ Tue, 02 Aug 2022 19:20:55: 35000000 INFO @ Tue, 02 Aug 2022 19:20:57: 39000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 19:21:02: 43000000 INFO @ Tue, 02 Aug 2022 19:21:03: 36000000 INFO @ Tue, 02 Aug 2022 19:21:05: 40000000 INFO @ Tue, 02 Aug 2022 19:21:11: 44000000 INFO @ Tue, 02 Aug 2022 19:21:12: 37000000 INFO @ Tue, 02 Aug 2022 19:21:13: 41000000 INFO @ Tue, 02 Aug 2022 19:21:19: 45000000 INFO @ Tue, 02 Aug 2022 19:21:20: 38000000 INFO @ Tue, 02 Aug 2022 19:21:22: 42000000 INFO @ Tue, 02 Aug 2022 19:21:28: 39000000 INFO @ Tue, 02 Aug 2022 19:21:28: 46000000 INFO @ Tue, 02 Aug 2022 19:21:30: 43000000 INFO @ Tue, 02 Aug 2022 19:21:36: 40000000 INFO @ Tue, 02 Aug 2022 19:21:37: 47000000 INFO @ Tue, 02 Aug 2022 19:21:39: 44000000 INFO @ Tue, 02 Aug 2022 19:21:44: 41000000 INFO @ Tue, 02 Aug 2022 19:21:46: 48000000 INFO @ Tue, 02 Aug 2022 19:21:47: 45000000 INFO @ Tue, 02 Aug 2022 19:21:52: 42000000 INFO @ Tue, 02 Aug 2022 19:21:54: 49000000 INFO @ Tue, 02 Aug 2022 19:21:56: 46000000 INFO @ Tue, 02 Aug 2022 19:22:00: 43000000 INFO @ Tue, 02 Aug 2022 19:22:03: 50000000 INFO @ Tue, 02 Aug 2022 19:22:04: 47000000 INFO @ Tue, 02 Aug 2022 19:22:08: 44000000 INFO @ Tue, 02 Aug 2022 19:22:12: 51000000 INFO @ Tue, 02 Aug 2022 19:22:12: 48000000 INFO @ Tue, 02 Aug 2022 19:22:16: 45000000 INFO @ Tue, 02 Aug 2022 19:22:20: 52000000 INFO @ Tue, 02 Aug 2022 19:22:21: 49000000 INFO @ Tue, 02 Aug 2022 19:22:24: 46000000 INFO @ Tue, 02 Aug 2022 19:22:29: 50000000 INFO @ Tue, 02 Aug 2022 19:22:29: 53000000 INFO @ Tue, 02 Aug 2022 19:22:32: 47000000 INFO @ Tue, 02 Aug 2022 19:22:37: 51000000 INFO @ Tue, 02 Aug 2022 19:22:37: 54000000 INFO @ Tue, 02 Aug 2022 19:22:40: 48000000 INFO @ Tue, 02 Aug 2022 19:22:46: 52000000 INFO @ Tue, 02 Aug 2022 19:22:46: 55000000 INFO @ Tue, 02 Aug 2022 19:22:48: 49000000 INFO @ Tue, 02 Aug 2022 19:22:54: 53000000 INFO @ Tue, 02 Aug 2022 19:22:54: 56000000 INFO @ Tue, 02 Aug 2022 19:22:56: 50000000 INFO @ Tue, 02 Aug 2022 19:23:02: 57000000 INFO @ Tue, 02 Aug 2022 19:23:02: 54000000 INFO @ Tue, 02 Aug 2022 19:23:02: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 19:23:02: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 19:23:02: #1 total tags in treatment: 26838774 INFO @ Tue, 02 Aug 2022 19:23:02: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:23:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:23:03: #1 tags after filtering in treatment: 17202639 INFO @ Tue, 02 Aug 2022 19:23:03: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 19:23:03: #1 finished! INFO @ Tue, 02 Aug 2022 19:23:03: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:23:03: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:23:04: #2 number of paired peaks: 360 WARNING @ Tue, 02 Aug 2022 19:23:04: Fewer paired peaks (360) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 360 pairs to build model! INFO @ Tue, 02 Aug 2022 19:23:04: start model_add_line... INFO @ Tue, 02 Aug 2022 19:23:04: start X-correlation... INFO @ Tue, 02 Aug 2022 19:23:04: end of X-cor INFO @ Tue, 02 Aug 2022 19:23:04: #2 finished! INFO @ Tue, 02 Aug 2022 19:23:04: #2 predicted fragment length is 164 bps INFO @ Tue, 02 Aug 2022 19:23:04: #2 alternative fragment length(s) may be 3,164 bps INFO @ Tue, 02 Aug 2022 19:23:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.05_model.r WARNING @ Tue, 02 Aug 2022 19:23:04: #2 Since the d (164) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:23:04: #2 You may need to consider one of the other alternative d(s): 3,164 WARNING @ Tue, 02 Aug 2022 19:23:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:23:04: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:23:04: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:23:04: 51000000 INFO @ Tue, 02 Aug 2022 19:23:10: 55000000 INFO @ Tue, 02 Aug 2022 19:23:13: 52000000 INFO @ Tue, 02 Aug 2022 19:23:18: 56000000 INFO @ Tue, 02 Aug 2022 19:23:21: 53000000 INFO @ Tue, 02 Aug 2022 19:23:26: 57000000 INFO @ Tue, 02 Aug 2022 19:23:27: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 19:23:27: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 19:23:27: #1 total tags in treatment: 26838774 INFO @ Tue, 02 Aug 2022 19:23:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:23:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:23:27: #1 tags after filtering in treatment: 17202639 INFO @ Tue, 02 Aug 2022 19:23:27: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 19:23:27: #1 finished! INFO @ Tue, 02 Aug 2022 19:23:27: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:23:27: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:23:29: #2 number of paired peaks: 360 WARNING @ Tue, 02 Aug 2022 19:23:29: Fewer paired peaks (360) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 360 pairs to build model! INFO @ Tue, 02 Aug 2022 19:23:29: start model_add_line... INFO @ Tue, 02 Aug 2022 19:23:29: start X-correlation... INFO @ Tue, 02 Aug 2022 19:23:29: end of X-cor INFO @ Tue, 02 Aug 2022 19:23:29: #2 finished! INFO @ Tue, 02 Aug 2022 19:23:29: #2 predicted fragment length is 164 bps INFO @ Tue, 02 Aug 2022 19:23:29: #2 alternative fragment length(s) may be 3,164 bps INFO @ Tue, 02 Aug 2022 19:23:29: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.10_model.r WARNING @ Tue, 02 Aug 2022 19:23:29: #2 Since the d (164) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:23:29: #2 You may need to consider one of the other alternative d(s): 3,164 WARNING @ Tue, 02 Aug 2022 19:23:29: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:23:29: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:23:29: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:23:29: 54000000 INFO @ Tue, 02 Aug 2022 19:23:36: 55000000 INFO @ Tue, 02 Aug 2022 19:23:37: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:23:43: 56000000 INFO @ Tue, 02 Aug 2022 19:23:51: 57000000 INFO @ Tue, 02 Aug 2022 19:23:51: #1 tag size is determined as 100 bps INFO @ Tue, 02 Aug 2022 19:23:51: #1 tag size = 100 INFO @ Tue, 02 Aug 2022 19:23:51: #1 total tags in treatment: 26838774 INFO @ Tue, 02 Aug 2022 19:23:51: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 19:23:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 19:23:52: #1 tags after filtering in treatment: 17202639 INFO @ Tue, 02 Aug 2022 19:23:52: #1 Redundant rate of treatment: 0.36 INFO @ Tue, 02 Aug 2022 19:23:52: #1 finished! INFO @ Tue, 02 Aug 2022 19:23:52: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 19:23:52: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 19:23:53: #2 number of paired peaks: 360 WARNING @ Tue, 02 Aug 2022 19:23:53: Fewer paired peaks (360) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 360 pairs to build model! INFO @ Tue, 02 Aug 2022 19:23:53: start model_add_line... INFO @ Tue, 02 Aug 2022 19:23:53: start X-correlation... INFO @ Tue, 02 Aug 2022 19:23:53: end of X-cor INFO @ Tue, 02 Aug 2022 19:23:53: #2 finished! INFO @ Tue, 02 Aug 2022 19:23:53: #2 predicted fragment length is 164 bps INFO @ Tue, 02 Aug 2022 19:23:53: #2 alternative fragment length(s) may be 3,164 bps INFO @ Tue, 02 Aug 2022 19:23:53: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.20_model.r WARNING @ Tue, 02 Aug 2022 19:23:53: #2 Since the d (164) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 19:23:53: #2 You may need to consider one of the other alternative d(s): 3,164 WARNING @ Tue, 02 Aug 2022 19:23:53: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 19:23:53: #3 Call peaks... INFO @ Tue, 02 Aug 2022 19:23:53: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 19:23:53: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.05_peaks.xls INFO @ Tue, 02 Aug 2022 19:23:53: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:23:53: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.05_summits.bed INFO @ Tue, 02 Aug 2022 19:23:53: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11655 records, 4 fields): 12 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:24:02: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:24:18: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.10_peaks.xls INFO @ Tue, 02 Aug 2022 19:24:18: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:24:18: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.10_summits.bed INFO @ Tue, 02 Aug 2022 19:24:18: Done! pass1 - making usageList (14 chroms): 2 millis pass2 - checking and writing primary data (5519 records, 4 fields): 6 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 19:24:26: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 19:24:43: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.20_peaks.xls INFO @ Tue, 02 Aug 2022 19:24:43: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 19:24:43: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12413738/SRX12413738.20_summits.bed INFO @ Tue, 02 Aug 2022 19:24:43: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (1401 records, 4 fields): 3 millis CompletedMACS2peakCalling