Job ID = 16438200 SRX = SRX12261369 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 44306181 spots for SRR15972625/SRR15972625.sra Written 44306181 spots for SRR15972625/SRR15972625.sra fastq に変換しました。 bowtie でマッピング中... Your job 16439160 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:01 Multiseed full-index search: 00:44:50 44306181 reads; of these: 44306181 (100.00%) were paired; of these: 8484508 (19.15%) aligned concordantly 0 times 23089389 (52.11%) aligned concordantly exactly 1 time 12732284 (28.74%) aligned concordantly >1 times ---- 8484508 pairs aligned concordantly 0 times; of these: 165443 (1.95%) aligned discordantly 1 time ---- 8319065 pairs aligned 0 times concordantly or discordantly; of these: 16638130 mates make up the pairs; of these: 15743231 (94.62%) aligned 0 times 541999 (3.26%) aligned exactly 1 time 352900 (2.12%) aligned >1 times 82.23% overall alignment rate Time searching: 00:44:51 Overall time: 00:44:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 32 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 10091494 / 24254999 = 0.4161 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:51:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:51:49: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:51:49: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:51:54: 1000000 INFO @ Tue, 02 Aug 2022 14:52:00: 2000000 INFO @ Tue, 02 Aug 2022 14:52:05: 3000000 INFO @ Tue, 02 Aug 2022 14:52:10: 4000000 INFO @ Tue, 02 Aug 2022 14:52:15: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:52:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:52:19: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:52:19: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:52:20: 6000000 INFO @ Tue, 02 Aug 2022 14:52:25: 1000000 INFO @ Tue, 02 Aug 2022 14:52:25: 7000000 INFO @ Tue, 02 Aug 2022 14:52:30: 2000000 INFO @ Tue, 02 Aug 2022 14:52:31: 8000000 INFO @ Tue, 02 Aug 2022 14:52:36: 3000000 INFO @ Tue, 02 Aug 2022 14:52:36: 9000000 INFO @ Tue, 02 Aug 2022 14:52:41: 10000000 INFO @ Tue, 02 Aug 2022 14:52:42: 4000000 INFO @ Tue, 02 Aug 2022 14:52:46: 11000000 INFO @ Tue, 02 Aug 2022 14:52:47: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 14:52:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 14:52:49: #1 read tag files... INFO @ Tue, 02 Aug 2022 14:52:49: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 14:52:51: 12000000 INFO @ Tue, 02 Aug 2022 14:52:52: 6000000 INFO @ Tue, 02 Aug 2022 14:52:54: 1000000 INFO @ Tue, 02 Aug 2022 14:52:57: 13000000 INFO @ Tue, 02 Aug 2022 14:52:58: 7000000 INFO @ Tue, 02 Aug 2022 14:53:00: 2000000 INFO @ Tue, 02 Aug 2022 14:53:02: 14000000 INFO @ Tue, 02 Aug 2022 14:53:04: 8000000 INFO @ Tue, 02 Aug 2022 14:53:06: 3000000 INFO @ Tue, 02 Aug 2022 14:53:07: 15000000 INFO @ Tue, 02 Aug 2022 14:53:09: 9000000 INFO @ Tue, 02 Aug 2022 14:53:11: 4000000 INFO @ Tue, 02 Aug 2022 14:53:12: 16000000 INFO @ Tue, 02 Aug 2022 14:53:15: 10000000 INFO @ Tue, 02 Aug 2022 14:53:17: 5000000 INFO @ Tue, 02 Aug 2022 14:53:17: 17000000 INFO @ Tue, 02 Aug 2022 14:53:21: 11000000 INFO @ Tue, 02 Aug 2022 14:53:22: 6000000 INFO @ Tue, 02 Aug 2022 14:53:23: 18000000 INFO @ Tue, 02 Aug 2022 14:53:27: 12000000 INFO @ Tue, 02 Aug 2022 14:53:28: 7000000 INFO @ Tue, 02 Aug 2022 14:53:28: 19000000 INFO @ Tue, 02 Aug 2022 14:53:33: 13000000 INFO @ Tue, 02 Aug 2022 14:53:33: 20000000 INFO @ Tue, 02 Aug 2022 14:53:33: 8000000 INFO @ Tue, 02 Aug 2022 14:53:39: 21000000 INFO @ Tue, 02 Aug 2022 14:53:39: 14000000 INFO @ Tue, 02 Aug 2022 14:53:39: 9000000 INFO @ Tue, 02 Aug 2022 14:53:44: 22000000 INFO @ Tue, 02 Aug 2022 14:53:45: 15000000 INFO @ Tue, 02 Aug 2022 14:53:45: 10000000 INFO @ Tue, 02 Aug 2022 14:53:49: 23000000 INFO @ Tue, 02 Aug 2022 14:53:51: 16000000 INFO @ Tue, 02 Aug 2022 14:53:51: 11000000 INFO @ Tue, 02 Aug 2022 14:53:54: 24000000 INFO @ Tue, 02 Aug 2022 14:53:56: 17000000 INFO @ Tue, 02 Aug 2022 14:53:56: 12000000 INFO @ Tue, 02 Aug 2022 14:53:59: 25000000 INFO @ Tue, 02 Aug 2022 14:54:02: 13000000 INFO @ Tue, 02 Aug 2022 14:54:02: 18000000 INFO @ Tue, 02 Aug 2022 14:54:05: 26000000 INFO @ Tue, 02 Aug 2022 14:54:08: 14000000 INFO @ Tue, 02 Aug 2022 14:54:08: 19000000 INFO @ Tue, 02 Aug 2022 14:54:10: 27000000 INFO @ Tue, 02 Aug 2022 14:54:14: 20000000 INFO @ Tue, 02 Aug 2022 14:54:14: 15000000 INFO @ Tue, 02 Aug 2022 14:54:15: 28000000 INFO @ Tue, 02 Aug 2022 14:54:20: 21000000 INFO @ Tue, 02 Aug 2022 14:54:20: 16000000 INFO @ Tue, 02 Aug 2022 14:54:20: 29000000 INFO @ Tue, 02 Aug 2022 14:54:25: 30000000 INFO @ Tue, 02 Aug 2022 14:54:25: 22000000 INFO @ Tue, 02 Aug 2022 14:54:26: 17000000 INFO @ Tue, 02 Aug 2022 14:54:30: 31000000 INFO @ Tue, 02 Aug 2022 14:54:31: 23000000 INFO @ Tue, 02 Aug 2022 14:54:32: 18000000 INFO @ Tue, 02 Aug 2022 14:54:35: 32000000 INFO @ Tue, 02 Aug 2022 14:54:37: 24000000 INFO @ Tue, 02 Aug 2022 14:54:37: 19000000 INFO @ Tue, 02 Aug 2022 14:54:41: 33000000 INFO @ Tue, 02 Aug 2022 14:54:43: 25000000 INFO @ Tue, 02 Aug 2022 14:54:43: 20000000 INFO @ Tue, 02 Aug 2022 14:54:46: 34000000 INFO @ Tue, 02 Aug 2022 14:54:49: 26000000 INFO @ Tue, 02 Aug 2022 14:54:49: 21000000 INFO @ Tue, 02 Aug 2022 14:54:51: 35000000 INFO @ Tue, 02 Aug 2022 14:54:54: 27000000 INFO @ Tue, 02 Aug 2022 14:54:55: 22000000 INFO @ Tue, 02 Aug 2022 14:54:57: 36000000 INFO @ Tue, 02 Aug 2022 14:55:00: 28000000 INFO @ Tue, 02 Aug 2022 14:55:00: 23000000 INFO @ Tue, 02 Aug 2022 14:55:02: 37000000 INFO @ Tue, 02 Aug 2022 14:55:06: 29000000 INFO @ Tue, 02 Aug 2022 14:55:06: 24000000 INFO @ Tue, 02 Aug 2022 14:55:07: 38000000 INFO @ Tue, 02 Aug 2022 14:55:12: 30000000 INFO @ Tue, 02 Aug 2022 14:55:12: 25000000 INFO @ Tue, 02 Aug 2022 14:55:12: 39000000 INFO @ Tue, 02 Aug 2022 14:55:17: 31000000 INFO @ Tue, 02 Aug 2022 14:55:17: 40000000 INFO @ Tue, 02 Aug 2022 14:55:18: 26000000 INFO @ Tue, 02 Aug 2022 14:55:22: 41000000 INFO @ Tue, 02 Aug 2022 14:55:23: 32000000 INFO @ Tue, 02 Aug 2022 14:55:24: 27000000 INFO @ Tue, 02 Aug 2022 14:55:27: 42000000 INFO @ Tue, 02 Aug 2022 14:55:29: 33000000 INFO @ Tue, 02 Aug 2022 14:55:29: 28000000 INFO @ Tue, 02 Aug 2022 14:55:33: 43000000 INFO @ Tue, 02 Aug 2022 14:55:35: 34000000 INFO @ Tue, 02 Aug 2022 14:55:35: 29000000 INFO @ Tue, 02 Aug 2022 14:55:38: 44000000 INFO @ Tue, 02 Aug 2022 14:55:40: 35000000 INFO @ Tue, 02 Aug 2022 14:55:41: 30000000 INFO @ Tue, 02 Aug 2022 14:55:43: 45000000 INFO @ Tue, 02 Aug 2022 14:55:46: 36000000 INFO @ Tue, 02 Aug 2022 14:55:46: 31000000 INFO @ Tue, 02 Aug 2022 14:55:48: 46000000 INFO @ Tue, 02 Aug 2022 14:55:51: 37000000 INFO @ Tue, 02 Aug 2022 14:55:52: 32000000 INFO @ Tue, 02 Aug 2022 14:55:53: 47000000 INFO @ Tue, 02 Aug 2022 14:55:56: 38000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 14:55:58: 33000000 INFO @ Tue, 02 Aug 2022 14:55:58: 48000000 INFO @ Tue, 02 Aug 2022 14:56:01: 39000000 INFO @ Tue, 02 Aug 2022 14:56:03: 49000000 INFO @ Tue, 02 Aug 2022 14:56:04: 34000000 INFO @ Tue, 02 Aug 2022 14:56:07: 40000000 INFO @ Tue, 02 Aug 2022 14:56:08: 50000000 INFO @ Tue, 02 Aug 2022 14:56:09: 35000000 INFO @ Tue, 02 Aug 2022 14:56:12: 41000000 INFO @ Tue, 02 Aug 2022 14:56:14: 51000000 INFO @ Tue, 02 Aug 2022 14:56:14: 36000000 INFO @ Tue, 02 Aug 2022 14:56:17: 42000000 INFO @ Tue, 02 Aug 2022 14:56:19: 52000000 INFO @ Tue, 02 Aug 2022 14:56:20: 37000000 INFO @ Tue, 02 Aug 2022 14:56:22: 43000000 INFO @ Tue, 02 Aug 2022 14:56:23: #1 tag size is determined as 74 bps INFO @ Tue, 02 Aug 2022 14:56:23: #1 tag size = 74 INFO @ Tue, 02 Aug 2022 14:56:23: #1 total tags in treatment: 25736400 INFO @ Tue, 02 Aug 2022 14:56:23: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:56:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:56:23: #1 tags after filtering in treatment: 13805669 INFO @ Tue, 02 Aug 2022 14:56:23: #1 Redundant rate of treatment: 0.46 INFO @ Tue, 02 Aug 2022 14:56:23: #1 finished! INFO @ Tue, 02 Aug 2022 14:56:23: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:56:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:56:24: #2 number of paired peaks: 1560 INFO @ Tue, 02 Aug 2022 14:56:24: start model_add_line... INFO @ Tue, 02 Aug 2022 14:56:25: start X-correlation... INFO @ Tue, 02 Aug 2022 14:56:25: end of X-cor INFO @ Tue, 02 Aug 2022 14:56:25: #2 finished! INFO @ Tue, 02 Aug 2022 14:56:25: #2 predicted fragment length is 61 bps INFO @ Tue, 02 Aug 2022 14:56:25: #2 alternative fragment length(s) may be 61 bps INFO @ Tue, 02 Aug 2022 14:56:25: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.05_model.r WARNING @ Tue, 02 Aug 2022 14:56:25: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:56:25: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Tue, 02 Aug 2022 14:56:25: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:56:25: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:56:25: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:56:25: 38000000 INFO @ Tue, 02 Aug 2022 14:56:28: 44000000 INFO @ Tue, 02 Aug 2022 14:56:30: 39000000 INFO @ Tue, 02 Aug 2022 14:56:34: 45000000 INFO @ Tue, 02 Aug 2022 14:56:35: 40000000 INFO @ Tue, 02 Aug 2022 14:56:39: 46000000 INFO @ Tue, 02 Aug 2022 14:56:41: 41000000 INFO @ Tue, 02 Aug 2022 14:56:45: 47000000 INFO @ Tue, 02 Aug 2022 14:56:46: 42000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 14:56:50: 48000000 INFO @ Tue, 02 Aug 2022 14:56:50: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:56:51: 43000000 INFO @ Tue, 02 Aug 2022 14:56:55: 49000000 INFO @ Tue, 02 Aug 2022 14:56:56: 44000000 INFO @ Tue, 02 Aug 2022 14:57:00: 50000000 INFO @ Tue, 02 Aug 2022 14:57:02: 45000000 INFO @ Tue, 02 Aug 2022 14:57:04: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.05_peaks.xls INFO @ Tue, 02 Aug 2022 14:57:04: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:57:04: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.05_summits.bed INFO @ Tue, 02 Aug 2022 14:57:04: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (18802 records, 4 fields): 44 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 14:57:05: 51000000 INFO @ Tue, 02 Aug 2022 14:57:08: 46000000 INFO @ Tue, 02 Aug 2022 14:57:11: 52000000 INFO @ Tue, 02 Aug 2022 14:57:13: 47000000 INFO @ Tue, 02 Aug 2022 14:57:15: #1 tag size is determined as 74 bps INFO @ Tue, 02 Aug 2022 14:57:15: #1 tag size = 74 INFO @ Tue, 02 Aug 2022 14:57:15: #1 total tags in treatment: 25736400 INFO @ Tue, 02 Aug 2022 14:57:15: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:57:15: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:57:15: #1 tags after filtering in treatment: 13805669 INFO @ Tue, 02 Aug 2022 14:57:15: #1 Redundant rate of treatment: 0.46 INFO @ Tue, 02 Aug 2022 14:57:15: #1 finished! INFO @ Tue, 02 Aug 2022 14:57:15: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:57:15: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:57:16: #2 number of paired peaks: 1560 INFO @ Tue, 02 Aug 2022 14:57:16: start model_add_line... INFO @ Tue, 02 Aug 2022 14:57:16: start X-correlation... INFO @ Tue, 02 Aug 2022 14:57:16: end of X-cor INFO @ Tue, 02 Aug 2022 14:57:16: #2 finished! INFO @ Tue, 02 Aug 2022 14:57:16: #2 predicted fragment length is 61 bps INFO @ Tue, 02 Aug 2022 14:57:16: #2 alternative fragment length(s) may be 61 bps INFO @ Tue, 02 Aug 2022 14:57:16: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.10_model.r WARNING @ Tue, 02 Aug 2022 14:57:16: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:57:16: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Tue, 02 Aug 2022 14:57:16: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:57:16: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:57:16: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:57:18: 48000000 INFO @ Tue, 02 Aug 2022 14:57:23: 49000000 INFO @ Tue, 02 Aug 2022 14:57:28: 50000000 INFO @ Tue, 02 Aug 2022 14:57:33: 51000000 INFO @ Tue, 02 Aug 2022 14:57:38: 52000000 INFO @ Tue, 02 Aug 2022 14:57:42: #1 tag size is determined as 74 bps INFO @ Tue, 02 Aug 2022 14:57:42: #1 tag size = 74 INFO @ Tue, 02 Aug 2022 14:57:42: #1 total tags in treatment: 25736400 INFO @ Tue, 02 Aug 2022 14:57:42: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 14:57:42: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 14:57:42: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:57:42: #1 tags after filtering in treatment: 13805669 INFO @ Tue, 02 Aug 2022 14:57:42: #1 Redundant rate of treatment: 0.46 INFO @ Tue, 02 Aug 2022 14:57:42: #1 finished! INFO @ Tue, 02 Aug 2022 14:57:42: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 14:57:42: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 14:57:43: #2 number of paired peaks: 1560 INFO @ Tue, 02 Aug 2022 14:57:43: start model_add_line... INFO @ Tue, 02 Aug 2022 14:57:43: start X-correlation... INFO @ Tue, 02 Aug 2022 14:57:43: end of X-cor INFO @ Tue, 02 Aug 2022 14:57:43: #2 finished! INFO @ Tue, 02 Aug 2022 14:57:43: #2 predicted fragment length is 61 bps INFO @ Tue, 02 Aug 2022 14:57:43: #2 alternative fragment length(s) may be 61 bps INFO @ Tue, 02 Aug 2022 14:57:43: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.20_model.r WARNING @ Tue, 02 Aug 2022 14:57:43: #2 Since the d (61) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 14:57:43: #2 You may need to consider one of the other alternative d(s): 61 WARNING @ Tue, 02 Aug 2022 14:57:43: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 14:57:43: #3 Call peaks... INFO @ Tue, 02 Aug 2022 14:57:43: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 14:57:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.10_peaks.xls INFO @ Tue, 02 Aug 2022 14:57:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:57:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.10_summits.bed INFO @ Tue, 02 Aug 2022 14:57:56: Done! pass1 - making usageList (13 chroms): 2 millis pass2 - checking and writing primary data (10825 records, 4 fields): 23 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 14:58:09: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 14:58:22: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.20_peaks.xls INFO @ Tue, 02 Aug 2022 14:58:22: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 14:58:22: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12261369/SRX12261369.20_summits.bed INFO @ Tue, 02 Aug 2022 14:58:22: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (3346 records, 4 fields): 25 millis CompletedMACS2peakCalling