Job ID = 16438139 SRX = SRX12261365 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 83073700 spots for SRR15972621/SRR15972621.sra Written 83073700 spots for SRR15972621/SRR15972621.sra fastq に変換しました。 bowtie でマッピング中... Your job 16439852 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 02:19:54 83073700 reads; of these: 83073700 (100.00%) were paired; of these: 15377270 (18.51%) aligned concordantly 0 times 49088288 (59.09%) aligned concordantly exactly 1 time 18608142 (22.40%) aligned concordantly >1 times ---- 15377270 pairs aligned concordantly 0 times; of these: 446900 (2.91%) aligned discordantly 1 time ---- 14930370 pairs aligned 0 times concordantly or discordantly; of these: 29860740 mates make up the pairs; of these: 27416376 (91.81%) aligned 0 times 1395390 (4.67%) aligned exactly 1 time 1048974 (3.51%) aligned >1 times 83.50% overall alignment rate Time searching: 02:19:54 Overall time: 02:19:54 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 60 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 18667803 / 44771098 = 0.4170 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:00:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:00:57: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:00:57: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:01:04: 1000000 INFO @ Tue, 02 Aug 2022 17:01:11: 2000000 INFO @ Tue, 02 Aug 2022 17:01:18: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:01:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:01:25: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:01:25: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:01:26: 4000000 INFO @ Tue, 02 Aug 2022 17:01:34: 1000000 INFO @ Tue, 02 Aug 2022 17:01:35: 5000000 INFO @ Tue, 02 Aug 2022 17:01:43: 2000000 INFO @ Tue, 02 Aug 2022 17:01:43: 6000000 INFO @ Tue, 02 Aug 2022 17:01:51: 3000000 INFO @ Tue, 02 Aug 2022 17:01:51: 7000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 17:01:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 17:01:55: #1 read tag files... INFO @ Tue, 02 Aug 2022 17:01:55: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 17:01:59: 4000000 INFO @ Tue, 02 Aug 2022 17:02:00: 8000000 INFO @ Tue, 02 Aug 2022 17:02:04: 1000000 INFO @ Tue, 02 Aug 2022 17:02:08: 5000000 INFO @ Tue, 02 Aug 2022 17:02:08: 9000000 INFO @ Tue, 02 Aug 2022 17:02:12: 2000000 INFO @ Tue, 02 Aug 2022 17:02:17: 10000000 INFO @ Tue, 02 Aug 2022 17:02:18: 6000000 INFO @ Tue, 02 Aug 2022 17:02:21: 3000000 INFO @ Tue, 02 Aug 2022 17:02:26: 11000000 INFO @ Tue, 02 Aug 2022 17:02:26: 7000000 INFO @ Tue, 02 Aug 2022 17:02:30: 4000000 INFO @ Tue, 02 Aug 2022 17:02:35: 12000000 INFO @ Tue, 02 Aug 2022 17:02:35: 8000000 INFO @ Tue, 02 Aug 2022 17:02:39: 5000000 INFO @ Tue, 02 Aug 2022 17:02:44: 13000000 INFO @ Tue, 02 Aug 2022 17:02:44: 9000000 INFO @ Tue, 02 Aug 2022 17:02:47: 6000000 INFO @ Tue, 02 Aug 2022 17:02:52: 10000000 INFO @ Tue, 02 Aug 2022 17:02:53: 14000000 INFO @ Tue, 02 Aug 2022 17:02:56: 7000000 INFO @ Tue, 02 Aug 2022 17:03:01: 11000000 INFO @ Tue, 02 Aug 2022 17:03:02: 15000000 INFO @ Tue, 02 Aug 2022 17:03:05: 8000000 INFO @ Tue, 02 Aug 2022 17:03:10: 12000000 INFO @ Tue, 02 Aug 2022 17:03:11: 16000000 INFO @ Tue, 02 Aug 2022 17:03:14: 9000000 INFO @ Tue, 02 Aug 2022 17:03:19: 13000000 INFO @ Tue, 02 Aug 2022 17:03:20: 17000000 INFO @ Tue, 02 Aug 2022 17:03:23: 10000000 INFO @ Tue, 02 Aug 2022 17:03:28: 14000000 INFO @ Tue, 02 Aug 2022 17:03:29: 18000000 INFO @ Tue, 02 Aug 2022 17:03:32: 11000000 INFO @ Tue, 02 Aug 2022 17:03:37: 15000000 INFO @ Tue, 02 Aug 2022 17:03:38: 19000000 INFO @ Tue, 02 Aug 2022 17:03:41: 12000000 INFO @ Tue, 02 Aug 2022 17:03:46: 16000000 INFO @ Tue, 02 Aug 2022 17:03:47: 20000000 INFO @ Tue, 02 Aug 2022 17:03:50: 13000000 INFO @ Tue, 02 Aug 2022 17:03:56: 17000000 INFO @ Tue, 02 Aug 2022 17:03:56: 21000000 INFO @ Tue, 02 Aug 2022 17:03:58: 14000000 INFO @ Tue, 02 Aug 2022 17:04:04: 22000000 INFO @ Tue, 02 Aug 2022 17:04:05: 18000000 INFO @ Tue, 02 Aug 2022 17:04:07: 15000000 INFO @ Tue, 02 Aug 2022 17:04:13: 23000000 INFO @ Tue, 02 Aug 2022 17:04:14: 19000000 INFO @ Tue, 02 Aug 2022 17:04:16: 16000000 INFO @ Tue, 02 Aug 2022 17:04:23: 24000000 INFO @ Tue, 02 Aug 2022 17:04:23: 20000000 INFO @ Tue, 02 Aug 2022 17:04:25: 17000000 INFO @ Tue, 02 Aug 2022 17:04:32: 25000000 INFO @ Tue, 02 Aug 2022 17:04:32: 21000000 INFO @ Tue, 02 Aug 2022 17:04:33: 18000000 INFO @ Tue, 02 Aug 2022 17:04:40: 26000000 INFO @ Tue, 02 Aug 2022 17:04:41: 22000000 INFO @ Tue, 02 Aug 2022 17:04:42: 19000000 INFO @ Tue, 02 Aug 2022 17:04:49: 27000000 INFO @ Tue, 02 Aug 2022 17:04:49: 23000000 INFO @ Tue, 02 Aug 2022 17:04:50: 20000000 INFO @ Tue, 02 Aug 2022 17:04:58: 28000000 INFO @ Tue, 02 Aug 2022 17:04:58: 24000000 INFO @ Tue, 02 Aug 2022 17:04:58: 21000000 INFO @ Tue, 02 Aug 2022 17:05:06: 29000000 INFO @ Tue, 02 Aug 2022 17:05:06: 25000000 INFO @ Tue, 02 Aug 2022 17:05:08: 22000000 INFO @ Tue, 02 Aug 2022 17:05:15: 30000000 INFO @ Tue, 02 Aug 2022 17:05:15: 26000000 INFO @ Tue, 02 Aug 2022 17:05:17: 23000000 INFO @ Tue, 02 Aug 2022 17:05:24: 31000000 INFO @ Tue, 02 Aug 2022 17:05:24: 27000000 INFO @ Tue, 02 Aug 2022 17:05:25: 24000000 INFO @ Tue, 02 Aug 2022 17:05:32: 32000000 INFO @ Tue, 02 Aug 2022 17:05:32: 28000000 INFO @ Tue, 02 Aug 2022 17:05:34: 25000000 INFO @ Tue, 02 Aug 2022 17:05:41: 33000000 INFO @ Tue, 02 Aug 2022 17:05:41: 29000000 INFO @ Tue, 02 Aug 2022 17:05:43: 26000000 INFO @ Tue, 02 Aug 2022 17:05:50: 34000000 INFO @ Tue, 02 Aug 2022 17:05:50: 30000000 INFO @ Tue, 02 Aug 2022 17:05:52: 27000000 INFO @ Tue, 02 Aug 2022 17:06:00: 35000000 INFO @ Tue, 02 Aug 2022 17:06:00: 31000000 INFO @ Tue, 02 Aug 2022 17:06:01: 28000000 INFO @ Tue, 02 Aug 2022 17:06:09: 36000000 INFO @ Tue, 02 Aug 2022 17:06:09: 32000000 INFO @ Tue, 02 Aug 2022 17:06:11: 29000000 INFO @ Tue, 02 Aug 2022 17:06:18: 37000000 INFO @ Tue, 02 Aug 2022 17:06:18: 33000000 INFO @ Tue, 02 Aug 2022 17:06:20: 30000000 INFO @ Tue, 02 Aug 2022 17:06:26: 38000000 INFO @ Tue, 02 Aug 2022 17:06:27: 34000000 INFO @ Tue, 02 Aug 2022 17:06:29: 31000000 INFO @ Tue, 02 Aug 2022 17:06:35: 39000000 INFO @ Tue, 02 Aug 2022 17:06:36: 35000000 INFO @ Tue, 02 Aug 2022 17:06:38: 32000000 INFO @ Tue, 02 Aug 2022 17:06:44: 40000000 INFO @ Tue, 02 Aug 2022 17:06:45: 36000000 INFO @ Tue, 02 Aug 2022 17:06:48: 33000000 INFO @ Tue, 02 Aug 2022 17:06:53: 41000000 INFO @ Tue, 02 Aug 2022 17:06:53: 37000000 INFO @ Tue, 02 Aug 2022 17:06:57: 34000000 INFO @ Tue, 02 Aug 2022 17:07:01: 42000000 INFO @ Tue, 02 Aug 2022 17:07:03: 38000000 INFO @ Tue, 02 Aug 2022 17:07:08: 35000000 INFO @ Tue, 02 Aug 2022 17:07:11: 43000000 INFO @ Tue, 02 Aug 2022 17:07:12: 39000000 INFO @ Tue, 02 Aug 2022 17:07:18: 36000000 INFO @ Tue, 02 Aug 2022 17:07:20: 44000000 INFO @ Tue, 02 Aug 2022 17:07:21: 40000000 INFO @ Tue, 02 Aug 2022 17:07:29: 37000000 INFO @ Tue, 02 Aug 2022 17:07:29: 45000000 INFO @ Tue, 02 Aug 2022 17:07:30: 41000000 INFO @ Tue, 02 Aug 2022 17:07:38: 46000000 INFO @ Tue, 02 Aug 2022 17:07:39: 42000000 INFO @ Tue, 02 Aug 2022 17:07:39: 38000000 INFO @ Tue, 02 Aug 2022 17:07:47: 47000000 INFO @ Tue, 02 Aug 2022 17:07:48: 43000000 INFO @ Tue, 02 Aug 2022 17:07:50: 39000000 INFO @ Tue, 02 Aug 2022 17:07:55: 48000000 INFO @ Tue, 02 Aug 2022 17:07:56: 44000000 INFO @ Tue, 02 Aug 2022 17:08:01: 40000000 INFO @ Tue, 02 Aug 2022 17:08:05: 49000000 INFO @ Tue, 02 Aug 2022 17:08:06: 45000000 INFO @ Tue, 02 Aug 2022 17:08:12: 41000000 INFO @ Tue, 02 Aug 2022 17:08:15: 50000000 INFO @ Tue, 02 Aug 2022 17:08:15: 46000000 INFO @ Tue, 02 Aug 2022 17:08:23: 42000000 INFO @ Tue, 02 Aug 2022 17:08:24: 51000000 INFO @ Tue, 02 Aug 2022 17:08:25: 47000000 INFO @ Tue, 02 Aug 2022 17:08:34: 48000000 INFO @ Tue, 02 Aug 2022 17:08:34: 43000000 INFO @ Tue, 02 Aug 2022 17:08:35: 52000000 INFO @ Tue, 02 Aug 2022 17:08:42: 49000000 INFO @ Tue, 02 Aug 2022 17:08:44: 53000000 INFO @ Tue, 02 Aug 2022 17:08:46: 44000000 INFO @ Tue, 02 Aug 2022 17:08:52: 50000000 INFO @ Tue, 02 Aug 2022 17:08:53: 54000000 INFO @ Tue, 02 Aug 2022 17:08:57: 45000000 INFO @ Tue, 02 Aug 2022 17:09:01: 51000000 INFO @ Tue, 02 Aug 2022 17:09:02: 55000000 INFO @ Tue, 02 Aug 2022 17:09:07: 46000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 17:09:10: 52000000 INFO @ Tue, 02 Aug 2022 17:09:12: 56000000 INFO @ Tue, 02 Aug 2022 17:09:18: 47000000 INFO @ Tue, 02 Aug 2022 17:09:19: 53000000 INFO @ Tue, 02 Aug 2022 17:09:21: 57000000 INFO @ Tue, 02 Aug 2022 17:09:28: 54000000 INFO @ Tue, 02 Aug 2022 17:09:29: 48000000 INFO @ Tue, 02 Aug 2022 17:09:30: 58000000 INFO @ Tue, 02 Aug 2022 17:09:37: 55000000 INFO @ Tue, 02 Aug 2022 17:09:39: 59000000 INFO @ Tue, 02 Aug 2022 17:09:40: 49000000 INFO @ Tue, 02 Aug 2022 17:09:46: 56000000 INFO @ Tue, 02 Aug 2022 17:09:49: 60000000 INFO @ Tue, 02 Aug 2022 17:09:51: 50000000 INFO @ Tue, 02 Aug 2022 17:09:55: 57000000 INFO @ Tue, 02 Aug 2022 17:09:58: 61000000 INFO @ Tue, 02 Aug 2022 17:10:02: 51000000 INFO @ Tue, 02 Aug 2022 17:10:05: 58000000 INFO @ Tue, 02 Aug 2022 17:10:08: 62000000 INFO @ Tue, 02 Aug 2022 17:10:13: 52000000 INFO @ Tue, 02 Aug 2022 17:10:14: 59000000 INFO @ Tue, 02 Aug 2022 17:10:17: 63000000 INFO @ Tue, 02 Aug 2022 17:10:23: 60000000 INFO @ Tue, 02 Aug 2022 17:10:24: 53000000 INFO @ Tue, 02 Aug 2022 17:10:27: 64000000 INFO @ Tue, 02 Aug 2022 17:10:32: 61000000 INFO @ Tue, 02 Aug 2022 17:10:35: 54000000 INFO @ Tue, 02 Aug 2022 17:10:36: 65000000 INFO @ Tue, 02 Aug 2022 17:10:41: 62000000 INFO @ Tue, 02 Aug 2022 17:10:46: 66000000 INFO @ Tue, 02 Aug 2022 17:10:46: 55000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 17:10:51: 63000000 INFO @ Tue, 02 Aug 2022 17:10:55: 67000000 INFO @ Tue, 02 Aug 2022 17:10:57: 56000000 INFO @ Tue, 02 Aug 2022 17:11:00: 64000000 INFO @ Tue, 02 Aug 2022 17:11:05: 68000000 INFO @ Tue, 02 Aug 2022 17:11:09: 57000000 INFO @ Tue, 02 Aug 2022 17:11:09: 65000000 INFO @ Tue, 02 Aug 2022 17:11:14: 69000000 INFO @ Tue, 02 Aug 2022 17:11:18: 66000000 INFO @ Tue, 02 Aug 2022 17:11:20: 58000000 INFO @ Tue, 02 Aug 2022 17:11:24: 70000000 INFO @ Tue, 02 Aug 2022 17:11:28: 67000000 INFO @ Tue, 02 Aug 2022 17:11:31: 59000000 INFO @ Tue, 02 Aug 2022 17:11:34: 71000000 INFO @ Tue, 02 Aug 2022 17:11:37: 68000000 INFO @ Tue, 02 Aug 2022 17:11:42: 60000000 INFO @ Tue, 02 Aug 2022 17:11:43: 72000000 INFO @ Tue, 02 Aug 2022 17:11:46: 69000000 INFO @ Tue, 02 Aug 2022 17:11:52: 73000000 INFO @ Tue, 02 Aug 2022 17:11:54: 61000000 INFO @ Tue, 02 Aug 2022 17:11:56: 70000000 INFO @ Tue, 02 Aug 2022 17:12:01: 74000000 INFO @ Tue, 02 Aug 2022 17:12:05: 71000000 INFO @ Tue, 02 Aug 2022 17:12:05: 62000000 INFO @ Tue, 02 Aug 2022 17:12:10: 75000000 INFO @ Tue, 02 Aug 2022 17:12:16: 72000000 INFO @ Tue, 02 Aug 2022 17:12:17: 63000000 INFO @ Tue, 02 Aug 2022 17:12:19: 76000000 INFO @ Tue, 02 Aug 2022 17:12:27: 77000000 INFO @ Tue, 02 Aug 2022 17:12:28: 64000000 INFO @ Tue, 02 Aug 2022 17:12:28: 73000000 INFO @ Tue, 02 Aug 2022 17:12:36: 78000000 INFO @ Tue, 02 Aug 2022 17:12:37: 74000000 INFO @ Tue, 02 Aug 2022 17:12:38: 65000000 INFO @ Tue, 02 Aug 2022 17:12:44: 79000000 INFO @ Tue, 02 Aug 2022 17:12:45: 75000000 INFO @ Tue, 02 Aug 2022 17:12:49: 66000000 INFO @ Tue, 02 Aug 2022 17:12:53: 80000000 INFO @ Tue, 02 Aug 2022 17:12:54: 76000000 INFO @ Tue, 02 Aug 2022 17:13:00: 67000000 INFO @ Tue, 02 Aug 2022 17:13:03: 81000000 INFO @ Tue, 02 Aug 2022 17:13:04: 77000000 INFO @ Tue, 02 Aug 2022 17:13:10: 68000000 INFO @ Tue, 02 Aug 2022 17:13:12: 78000000 INFO @ Tue, 02 Aug 2022 17:13:12: 82000000 INFO @ Tue, 02 Aug 2022 17:13:20: 69000000 INFO @ Tue, 02 Aug 2022 17:13:21: 79000000 INFO @ Tue, 02 Aug 2022 17:13:22: 83000000 INFO @ Tue, 02 Aug 2022 17:13:29: 70000000 INFO @ Tue, 02 Aug 2022 17:13:30: 80000000 INFO @ Tue, 02 Aug 2022 17:13:32: 84000000 INFO @ Tue, 02 Aug 2022 17:13:39: 71000000 INFO @ Tue, 02 Aug 2022 17:13:39: 81000000 INFO @ Tue, 02 Aug 2022 17:13:42: 85000000 INFO @ Tue, 02 Aug 2022 17:13:48: 72000000 INFO @ Tue, 02 Aug 2022 17:13:49: 82000000 INFO @ Tue, 02 Aug 2022 17:13:52: 86000000 INFO @ Tue, 02 Aug 2022 17:13:58: 73000000 INFO @ Tue, 02 Aug 2022 17:14:00: 83000000 INFO @ Tue, 02 Aug 2022 17:14:03: 87000000 INFO @ Tue, 02 Aug 2022 17:14:07: 74000000 INFO @ Tue, 02 Aug 2022 17:14:11: 84000000 INFO @ Tue, 02 Aug 2022 17:14:13: 88000000 INFO @ Tue, 02 Aug 2022 17:14:17: 75000000 INFO @ Tue, 02 Aug 2022 17:14:22: 85000000 INFO @ Tue, 02 Aug 2022 17:14:25: 89000000 INFO @ Tue, 02 Aug 2022 17:14:27: 76000000 INFO @ Tue, 02 Aug 2022 17:14:34: 86000000 INFO @ Tue, 02 Aug 2022 17:14:36: 90000000 INFO @ Tue, 02 Aug 2022 17:14:36: 77000000 INFO @ Tue, 02 Aug 2022 17:14:46: 78000000 INFO @ Tue, 02 Aug 2022 17:14:46: 87000000 INFO @ Tue, 02 Aug 2022 17:14:48: 91000000 INFO @ Tue, 02 Aug 2022 17:14:55: 79000000 INFO @ Tue, 02 Aug 2022 17:14:57: 88000000 INFO @ Tue, 02 Aug 2022 17:14:59: 92000000 INFO @ Tue, 02 Aug 2022 17:15:06: 80000000 INFO @ Tue, 02 Aug 2022 17:15:09: 89000000 INFO @ Tue, 02 Aug 2022 17:15:11: 93000000 INFO @ Tue, 02 Aug 2022 17:15:16: 81000000 INFO @ Tue, 02 Aug 2022 17:15:20: 90000000 INFO @ Tue, 02 Aug 2022 17:15:22: 94000000 INFO @ Tue, 02 Aug 2022 17:15:28: 82000000 INFO @ Tue, 02 Aug 2022 17:15:32: 91000000 INFO @ Tue, 02 Aug 2022 17:15:33: 95000000 INFO @ Tue, 02 Aug 2022 17:15:38: 83000000 INFO @ Tue, 02 Aug 2022 17:15:42: 92000000 INFO @ Tue, 02 Aug 2022 17:15:45: 96000000 INFO @ Tue, 02 Aug 2022 17:15:49: 84000000 INFO @ Tue, 02 Aug 2022 17:15:54: 93000000 INFO @ Tue, 02 Aug 2022 17:15:56: 97000000 INFO @ Tue, 02 Aug 2022 17:15:59: 85000000 INFO @ Tue, 02 Aug 2022 17:16:05: 94000000 INFO @ Tue, 02 Aug 2022 17:16:07: 98000000 INFO @ Tue, 02 Aug 2022 17:16:10: 86000000 INFO @ Tue, 02 Aug 2022 17:16:17: 95000000 INFO @ Tue, 02 Aug 2022 17:16:19: 99000000 INFO @ Tue, 02 Aug 2022 17:16:20: 87000000 INFO @ Tue, 02 Aug 2022 17:16:28: 96000000 INFO @ Tue, 02 Aug 2022 17:16:29: 100000000 INFO @ Tue, 02 Aug 2022 17:16:30: 88000000 INFO @ Tue, 02 Aug 2022 17:16:39: 97000000 INFO @ Tue, 02 Aug 2022 17:16:40: 89000000 INFO @ Tue, 02 Aug 2022 17:16:40: 101000000 INFO @ Tue, 02 Aug 2022 17:16:46: #1 tag size is determined as 64 bps INFO @ Tue, 02 Aug 2022 17:16:46: #1 tag size = 64 INFO @ Tue, 02 Aug 2022 17:16:46: #1 total tags in treatment: 49050548 INFO @ Tue, 02 Aug 2022 17:16:46: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:16:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:16:47: #1 tags after filtering in treatment: 23238822 INFO @ Tue, 02 Aug 2022 17:16:47: #1 Redundant rate of treatment: 0.53 INFO @ Tue, 02 Aug 2022 17:16:47: #1 finished! INFO @ Tue, 02 Aug 2022 17:16:47: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:16:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:16:49: #2 number of paired peaks: 323 WARNING @ Tue, 02 Aug 2022 17:16:49: Fewer paired peaks (323) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 323 pairs to build model! INFO @ Tue, 02 Aug 2022 17:16:49: start model_add_line... INFO @ Tue, 02 Aug 2022 17:16:49: start X-correlation... INFO @ Tue, 02 Aug 2022 17:16:49: end of X-cor INFO @ Tue, 02 Aug 2022 17:16:49: #2 finished! INFO @ Tue, 02 Aug 2022 17:16:49: #2 predicted fragment length is 40 bps INFO @ Tue, 02 Aug 2022 17:16:49: #2 alternative fragment length(s) may be 4,40 bps INFO @ Tue, 02 Aug 2022 17:16:49: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.05_model.r WARNING @ Tue, 02 Aug 2022 17:16:50: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:16:50: #2 You may need to consider one of the other alternative d(s): 4,40 WARNING @ Tue, 02 Aug 2022 17:16:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:16:50: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:16:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:16:50: 98000000 INFO @ Tue, 02 Aug 2022 17:16:50: 90000000 INFO @ Tue, 02 Aug 2022 17:17:00: 91000000 INFO @ Tue, 02 Aug 2022 17:17:01: 99000000 INFO @ Tue, 02 Aug 2022 17:17:10: 92000000 INFO @ Tue, 02 Aug 2022 17:17:11: 100000000 INFO @ Tue, 02 Aug 2022 17:17:20: 93000000 INFO @ Tue, 02 Aug 2022 17:17:22: 101000000 INFO @ Tue, 02 Aug 2022 17:17:27: #1 tag size is determined as 64 bps INFO @ Tue, 02 Aug 2022 17:17:27: #1 tag size = 64 INFO @ Tue, 02 Aug 2022 17:17:27: #1 total tags in treatment: 49050548 INFO @ Tue, 02 Aug 2022 17:17:27: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:17:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:17:29: #1 tags after filtering in treatment: 23238822 INFO @ Tue, 02 Aug 2022 17:17:29: #1 Redundant rate of treatment: 0.53 INFO @ Tue, 02 Aug 2022 17:17:29: #1 finished! INFO @ Tue, 02 Aug 2022 17:17:29: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:17:29: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:17:30: 94000000 INFO @ Tue, 02 Aug 2022 17:17:30: #2 number of paired peaks: 323 WARNING @ Tue, 02 Aug 2022 17:17:30: Fewer paired peaks (323) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 323 pairs to build model! INFO @ Tue, 02 Aug 2022 17:17:30: start model_add_line... INFO @ Tue, 02 Aug 2022 17:17:30: start X-correlation... INFO @ Tue, 02 Aug 2022 17:17:31: end of X-cor INFO @ Tue, 02 Aug 2022 17:17:31: #2 finished! INFO @ Tue, 02 Aug 2022 17:17:31: #2 predicted fragment length is 40 bps INFO @ Tue, 02 Aug 2022 17:17:31: #2 alternative fragment length(s) may be 4,40 bps INFO @ Tue, 02 Aug 2022 17:17:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.10_model.r WARNING @ Tue, 02 Aug 2022 17:17:31: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:17:31: #2 You may need to consider one of the other alternative d(s): 4,40 WARNING @ Tue, 02 Aug 2022 17:17:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:17:31: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:17:31: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:17:31: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:17:39: 95000000 INFO @ Tue, 02 Aug 2022 17:17:49: 96000000 INFO @ Tue, 02 Aug 2022 17:17:55: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.05_peaks.xls INFO @ Tue, 02 Aug 2022 17:17:55: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:17:55: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.05_summits.bed INFO @ Tue, 02 Aug 2022 17:17:55: Done! pass1 - making usageList (15 chroms): 10 millis pass2 - checking and writing primary data (20914 records, 4 fields): 49 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:17:59: 97000000 INFO @ Tue, 02 Aug 2022 17:18:09: 98000000 INFO @ Tue, 02 Aug 2022 17:18:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:18:20: 99000000 INFO @ Tue, 02 Aug 2022 17:18:29: 100000000 INFO @ Tue, 02 Aug 2022 17:18:34: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.10_peaks.xls INFO @ Tue, 02 Aug 2022 17:18:34: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:18:34: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.10_summits.bed INFO @ Tue, 02 Aug 2022 17:18:34: Done! pass1 - making usageList (13 chroms): 3 millis pass2 - checking and writing primary data (9127 records, 4 fields): 52 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 17:18:39: 101000000 INFO @ Tue, 02 Aug 2022 17:18:44: #1 tag size is determined as 64 bps INFO @ Tue, 02 Aug 2022 17:18:44: #1 tag size = 64 INFO @ Tue, 02 Aug 2022 17:18:44: #1 total tags in treatment: 49050548 INFO @ Tue, 02 Aug 2022 17:18:44: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 17:18:44: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 17:18:45: #1 tags after filtering in treatment: 23238822 INFO @ Tue, 02 Aug 2022 17:18:45: #1 Redundant rate of treatment: 0.53 INFO @ Tue, 02 Aug 2022 17:18:45: #1 finished! INFO @ Tue, 02 Aug 2022 17:18:45: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 17:18:45: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 17:18:47: #2 number of paired peaks: 323 WARNING @ Tue, 02 Aug 2022 17:18:47: Fewer paired peaks (323) than 1000! Model may not be build well! Lower your MFOLD parameter may erase this warning. Now I will use 323 pairs to build model! INFO @ Tue, 02 Aug 2022 17:18:47: start model_add_line... INFO @ Tue, 02 Aug 2022 17:18:47: start X-correlation... INFO @ Tue, 02 Aug 2022 17:18:47: end of X-cor INFO @ Tue, 02 Aug 2022 17:18:47: #2 finished! INFO @ Tue, 02 Aug 2022 17:18:47: #2 predicted fragment length is 40 bps INFO @ Tue, 02 Aug 2022 17:18:47: #2 alternative fragment length(s) may be 4,40 bps INFO @ Tue, 02 Aug 2022 17:18:47: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.20_model.r WARNING @ Tue, 02 Aug 2022 17:18:47: #2 Since the d (40) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 17:18:47: #2 You may need to consider one of the other alternative d(s): 4,40 WARNING @ Tue, 02 Aug 2022 17:18:47: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 17:18:47: #3 Call peaks... INFO @ Tue, 02 Aug 2022 17:18:47: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 17:19:28: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 17:19:51: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.20_peaks.xls INFO @ Tue, 02 Aug 2022 17:19:51: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 17:19:51: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12261365/SRX12261365.20_summits.bed INFO @ Tue, 02 Aug 2022 17:19:51: Done! pass1 - making usageList (11 chroms): 3 millis pass2 - checking and writing primary data (718 records, 4 fields): 36 millis CompletedMACS2peakCalling