Job ID = 16436264 SRX = SRX12178894 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:16:01 prefetch.2.10.7: 1) Downloading 'SRR15888020'... 2022-08-02T02:16:01 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:18:13 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:18:13 prefetch.2.10.7: 1) 'SRR15888020' was downloaded successfully 2022-08-02T02:18:13 prefetch.2.10.7: 'SRR15888020' has 0 unresolved dependencies Read 49626646 spots for SRR15888020/SRR15888020.sra Written 49626646 spots for SRR15888020/SRR15888020.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437061 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:45:11 49626646 reads; of these: 49626646 (100.00%) were paired; of these: 15397907 (31.03%) aligned concordantly 0 times 29386972 (59.22%) aligned concordantly exactly 1 time 4841767 (9.76%) aligned concordantly >1 times ---- 15397907 pairs aligned concordantly 0 times; of these: 6078543 (39.48%) aligned discordantly 1 time ---- 9319364 pairs aligned 0 times concordantly or discordantly; of these: 18638728 mates make up the pairs; of these: 10838930 (58.15%) aligned 0 times 5769064 (30.95%) aligned exactly 1 time 2030734 (10.90%) aligned >1 times 89.08% overall alignment rate Time searching: 00:45:11 Overall time: 00:45:11 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 7831372 / 40221923 = 0.1947 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:29:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:29:35: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:29:35: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:29:40: 1000000 INFO @ Tue, 02 Aug 2022 12:29:45: 2000000 INFO @ Tue, 02 Aug 2022 12:29:50: 3000000 INFO @ Tue, 02 Aug 2022 12:29:55: 4000000 INFO @ Tue, 02 Aug 2022 12:30:00: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:30:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:30:05: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:30:05: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:30:05: 6000000 INFO @ Tue, 02 Aug 2022 12:30:11: 7000000 INFO @ Tue, 02 Aug 2022 12:30:11: 1000000 INFO @ Tue, 02 Aug 2022 12:30:16: 8000000 INFO @ Tue, 02 Aug 2022 12:30:17: 2000000 INFO @ Tue, 02 Aug 2022 12:30:22: 9000000 INFO @ Tue, 02 Aug 2022 12:30:23: 3000000 INFO @ Tue, 02 Aug 2022 12:30:27: 10000000 INFO @ Tue, 02 Aug 2022 12:30:29: 4000000 INFO @ Tue, 02 Aug 2022 12:30:33: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:30:35: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:30:35: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:30:35: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:30:35: 5000000 INFO @ Tue, 02 Aug 2022 12:30:38: 12000000 INFO @ Tue, 02 Aug 2022 12:30:41: 6000000 INFO @ Tue, 02 Aug 2022 12:30:42: 1000000 INFO @ Tue, 02 Aug 2022 12:30:43: 13000000 INFO @ Tue, 02 Aug 2022 12:30:47: 7000000 INFO @ Tue, 02 Aug 2022 12:30:48: 2000000 INFO @ Tue, 02 Aug 2022 12:30:49: 14000000 INFO @ Tue, 02 Aug 2022 12:30:53: 8000000 INFO @ Tue, 02 Aug 2022 12:30:54: 3000000 INFO @ Tue, 02 Aug 2022 12:30:54: 15000000 INFO @ Tue, 02 Aug 2022 12:30:58: 9000000 INFO @ Tue, 02 Aug 2022 12:30:59: 16000000 INFO @ Tue, 02 Aug 2022 12:31:00: 4000000 INFO @ Tue, 02 Aug 2022 12:31:04: 10000000 INFO @ Tue, 02 Aug 2022 12:31:05: 17000000 INFO @ Tue, 02 Aug 2022 12:31:06: 5000000 INFO @ Tue, 02 Aug 2022 12:31:10: 18000000 INFO @ Tue, 02 Aug 2022 12:31:10: 11000000 INFO @ Tue, 02 Aug 2022 12:31:12: 6000000 INFO @ Tue, 02 Aug 2022 12:31:16: 19000000 INFO @ Tue, 02 Aug 2022 12:31:17: 12000000 INFO @ Tue, 02 Aug 2022 12:31:18: 7000000 INFO @ Tue, 02 Aug 2022 12:31:21: 20000000 INFO @ Tue, 02 Aug 2022 12:31:23: 13000000 INFO @ Tue, 02 Aug 2022 12:31:24: 8000000 INFO @ Tue, 02 Aug 2022 12:31:27: 21000000 INFO @ Tue, 02 Aug 2022 12:31:29: 14000000 INFO @ Tue, 02 Aug 2022 12:31:29: 9000000 INFO @ Tue, 02 Aug 2022 12:31:32: 22000000 INFO @ Tue, 02 Aug 2022 12:31:34: 15000000 INFO @ Tue, 02 Aug 2022 12:31:36: 10000000 INFO @ Tue, 02 Aug 2022 12:31:38: 23000000 INFO @ Tue, 02 Aug 2022 12:31:40: 16000000 INFO @ Tue, 02 Aug 2022 12:31:42: 11000000 INFO @ Tue, 02 Aug 2022 12:31:43: 24000000 INFO @ Tue, 02 Aug 2022 12:31:46: 17000000 INFO @ Tue, 02 Aug 2022 12:31:48: 12000000 INFO @ Tue, 02 Aug 2022 12:31:49: 25000000 INFO @ Tue, 02 Aug 2022 12:31:52: 18000000 INFO @ Tue, 02 Aug 2022 12:31:54: 26000000 INFO @ Tue, 02 Aug 2022 12:31:55: 13000000 INFO @ Tue, 02 Aug 2022 12:31:59: 19000000 INFO @ Tue, 02 Aug 2022 12:32:00: 27000000 INFO @ Tue, 02 Aug 2022 12:32:01: 14000000 INFO @ Tue, 02 Aug 2022 12:32:05: 20000000 INFO @ Tue, 02 Aug 2022 12:32:06: 28000000 INFO @ Tue, 02 Aug 2022 12:32:07: 15000000 INFO @ Tue, 02 Aug 2022 12:32:11: 21000000 INFO @ Tue, 02 Aug 2022 12:32:12: 29000000 INFO @ Tue, 02 Aug 2022 12:32:13: 16000000 INFO @ Tue, 02 Aug 2022 12:32:17: 22000000 INFO @ Tue, 02 Aug 2022 12:32:18: 30000000 INFO @ Tue, 02 Aug 2022 12:32:19: 17000000 INFO @ Tue, 02 Aug 2022 12:32:22: 23000000 INFO @ Tue, 02 Aug 2022 12:32:23: 31000000 INFO @ Tue, 02 Aug 2022 12:32:25: 18000000 INFO @ Tue, 02 Aug 2022 12:32:28: 24000000 INFO @ Tue, 02 Aug 2022 12:32:29: 32000000 INFO @ Tue, 02 Aug 2022 12:32:31: 19000000 INFO @ Tue, 02 Aug 2022 12:32:34: 25000000 INFO @ Tue, 02 Aug 2022 12:32:34: 33000000 INFO @ Tue, 02 Aug 2022 12:32:36: 20000000 INFO @ Tue, 02 Aug 2022 12:32:40: 26000000 INFO @ Tue, 02 Aug 2022 12:32:40: 34000000 INFO @ Tue, 02 Aug 2022 12:32:42: 21000000 INFO @ Tue, 02 Aug 2022 12:32:46: 27000000 INFO @ Tue, 02 Aug 2022 12:32:46: 35000000 INFO @ Tue, 02 Aug 2022 12:32:48: 22000000 INFO @ Tue, 02 Aug 2022 12:32:52: 36000000 INFO @ Tue, 02 Aug 2022 12:32:52: 28000000 INFO @ Tue, 02 Aug 2022 12:32:54: 23000000 INFO @ Tue, 02 Aug 2022 12:32:57: 37000000 INFO @ Tue, 02 Aug 2022 12:32:57: 29000000 INFO @ Tue, 02 Aug 2022 12:32:59: 24000000 INFO @ Tue, 02 Aug 2022 12:33:03: 38000000 INFO @ Tue, 02 Aug 2022 12:33:03: 30000000 INFO @ Tue, 02 Aug 2022 12:33:05: 25000000 INFO @ Tue, 02 Aug 2022 12:33:08: 39000000 INFO @ Tue, 02 Aug 2022 12:33:09: 31000000 INFO @ Tue, 02 Aug 2022 12:33:11: 26000000 INFO @ Tue, 02 Aug 2022 12:33:14: 40000000 INFO @ Tue, 02 Aug 2022 12:33:15: 32000000 INFO @ Tue, 02 Aug 2022 12:33:17: 27000000 INFO @ Tue, 02 Aug 2022 12:33:20: 41000000 INFO @ Tue, 02 Aug 2022 12:33:21: 33000000 INFO @ Tue, 02 Aug 2022 12:33:23: 28000000 INFO @ Tue, 02 Aug 2022 12:33:25: 42000000 INFO @ Tue, 02 Aug 2022 12:33:27: 34000000 INFO @ Tue, 02 Aug 2022 12:33:29: 29000000 INFO @ Tue, 02 Aug 2022 12:33:31: 43000000 INFO @ Tue, 02 Aug 2022 12:33:33: 35000000 INFO @ Tue, 02 Aug 2022 12:33:35: 30000000 INFO @ Tue, 02 Aug 2022 12:33:36: 44000000 INFO @ Tue, 02 Aug 2022 12:33:39: 36000000 INFO @ Tue, 02 Aug 2022 12:33:41: 31000000 INFO @ Tue, 02 Aug 2022 12:33:42: 45000000 INFO @ Tue, 02 Aug 2022 12:33:45: 37000000 INFO @ Tue, 02 Aug 2022 12:33:47: 32000000 INFO @ Tue, 02 Aug 2022 12:33:47: 46000000 INFO @ Tue, 02 Aug 2022 12:33:51: 38000000 INFO @ Tue, 02 Aug 2022 12:33:53: 33000000 INFO @ Tue, 02 Aug 2022 12:33:53: 47000000 INFO @ Tue, 02 Aug 2022 12:33:56: 39000000 INFO @ Tue, 02 Aug 2022 12:33:58: 34000000 INFO @ Tue, 02 Aug 2022 12:33:59: 48000000 INFO @ Tue, 02 Aug 2022 12:34:02: 40000000 INFO @ Tue, 02 Aug 2022 12:34:04: 35000000 INFO @ Tue, 02 Aug 2022 12:34:04: 49000000 INFO @ Tue, 02 Aug 2022 12:34:08: 41000000 INFO @ Tue, 02 Aug 2022 12:34:10: 36000000 INFO @ Tue, 02 Aug 2022 12:34:10: 50000000 INFO @ Tue, 02 Aug 2022 12:34:13: 42000000 INFO @ Tue, 02 Aug 2022 12:34:15: 37000000 INFO @ Tue, 02 Aug 2022 12:34:16: 51000000 INFO @ Tue, 02 Aug 2022 12:34:19: 43000000 INFO @ Tue, 02 Aug 2022 12:34:21: 38000000 INFO @ Tue, 02 Aug 2022 12:34:22: 52000000 INFO @ Tue, 02 Aug 2022 12:34:24: 44000000 INFO @ Tue, 02 Aug 2022 12:34:27: 39000000 INFO @ Tue, 02 Aug 2022 12:34:27: 53000000 INFO @ Tue, 02 Aug 2022 12:34:30: 45000000 INFO @ Tue, 02 Aug 2022 12:34:32: 40000000 INFO @ Tue, 02 Aug 2022 12:34:33: 54000000 INFO @ Tue, 02 Aug 2022 12:34:36: 46000000 INFO @ Tue, 02 Aug 2022 12:34:38: 41000000 INFO @ Tue, 02 Aug 2022 12:34:39: 55000000 INFO @ Tue, 02 Aug 2022 12:34:41: 47000000 INFO @ Tue, 02 Aug 2022 12:34:43: 42000000 INFO @ Tue, 02 Aug 2022 12:34:45: 56000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:34:47: 48000000 INFO @ Tue, 02 Aug 2022 12:34:49: 43000000 INFO @ Tue, 02 Aug 2022 12:34:50: 57000000 INFO @ Tue, 02 Aug 2022 12:34:52: 49000000 INFO @ Tue, 02 Aug 2022 12:34:55: 44000000 INFO @ Tue, 02 Aug 2022 12:34:56: 58000000 INFO @ Tue, 02 Aug 2022 12:34:58: 50000000 INFO @ Tue, 02 Aug 2022 12:35:00: 45000000 INFO @ Tue, 02 Aug 2022 12:35:02: 59000000 INFO @ Tue, 02 Aug 2022 12:35:03: 51000000 INFO @ Tue, 02 Aug 2022 12:35:06: 46000000 INFO @ Tue, 02 Aug 2022 12:35:08: 60000000 INFO @ Tue, 02 Aug 2022 12:35:09: 52000000 INFO @ Tue, 02 Aug 2022 12:35:11: 47000000 INFO @ Tue, 02 Aug 2022 12:35:13: 61000000 INFO @ Tue, 02 Aug 2022 12:35:14: 53000000 INFO @ Tue, 02 Aug 2022 12:35:17: 48000000 INFO @ Tue, 02 Aug 2022 12:35:19: 62000000 INFO @ Tue, 02 Aug 2022 12:35:20: 54000000 INFO @ Tue, 02 Aug 2022 12:35:22: 49000000 INFO @ Tue, 02 Aug 2022 12:35:25: 63000000 INFO @ Tue, 02 Aug 2022 12:35:25: 55000000 INFO @ Tue, 02 Aug 2022 12:35:28: 50000000 INFO @ Tue, 02 Aug 2022 12:35:31: 56000000 INFO @ Tue, 02 Aug 2022 12:35:31: 64000000 INFO @ Tue, 02 Aug 2022 12:35:33: 51000000 INFO @ Tue, 02 Aug 2022 12:35:36: 57000000 INFO @ Tue, 02 Aug 2022 12:35:37: 65000000 INFO @ Tue, 02 Aug 2022 12:35:39: 52000000 INFO @ Tue, 02 Aug 2022 12:35:42: 58000000 INFO @ Tue, 02 Aug 2022 12:35:43: 66000000 INFO @ Tue, 02 Aug 2022 12:35:44: 53000000 INFO @ Tue, 02 Aug 2022 12:35:47: 59000000 INFO @ Tue, 02 Aug 2022 12:35:48: 67000000 INFO @ Tue, 02 Aug 2022 12:35:50: 54000000 INFO @ Tue, 02 Aug 2022 12:35:53: 60000000 INFO @ Tue, 02 Aug 2022 12:35:54: 68000000 INFO @ Tue, 02 Aug 2022 12:35:55: 55000000 INFO @ Tue, 02 Aug 2022 12:35:58: 61000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:36:00: 69000000 INFO @ Tue, 02 Aug 2022 12:36:01: 56000000 INFO @ Tue, 02 Aug 2022 12:36:04: 62000000 INFO @ Tue, 02 Aug 2022 12:36:06: 70000000 INFO @ Tue, 02 Aug 2022 12:36:06: 57000000 INFO @ Tue, 02 Aug 2022 12:36:10: 63000000 INFO @ Tue, 02 Aug 2022 12:36:12: 71000000 INFO @ Tue, 02 Aug 2022 12:36:12: 58000000 INFO @ Tue, 02 Aug 2022 12:36:15: 64000000 INFO @ Tue, 02 Aug 2022 12:36:17: 59000000 INFO @ Tue, 02 Aug 2022 12:36:17: 72000000 INFO @ Tue, 02 Aug 2022 12:36:21: 65000000 INFO @ Tue, 02 Aug 2022 12:36:22: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:36:22: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:36:22: #1 total tags in treatment: 27134863 INFO @ Tue, 02 Aug 2022 12:36:22: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:36:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:36:22: #1 tags after filtering in treatment: 16536477 INFO @ Tue, 02 Aug 2022 12:36:22: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 02 Aug 2022 12:36:22: #1 finished! INFO @ Tue, 02 Aug 2022 12:36:22: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:36:22: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:36:23: 60000000 INFO @ Tue, 02 Aug 2022 12:36:24: #2 number of paired peaks: 1118 INFO @ Tue, 02 Aug 2022 12:36:24: start model_add_line... INFO @ Tue, 02 Aug 2022 12:36:24: start X-correlation... INFO @ Tue, 02 Aug 2022 12:36:24: end of X-cor INFO @ Tue, 02 Aug 2022 12:36:24: #2 finished! INFO @ Tue, 02 Aug 2022 12:36:24: #2 predicted fragment length is 82 bps INFO @ Tue, 02 Aug 2022 12:36:24: #2 alternative fragment length(s) may be 4,82 bps INFO @ Tue, 02 Aug 2022 12:36:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.05_model.r WARNING @ Tue, 02 Aug 2022 12:36:24: #2 Since the d (82) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:36:24: #2 You may need to consider one of the other alternative d(s): 4,82 WARNING @ Tue, 02 Aug 2022 12:36:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:36:24: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:36:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:36:26: 66000000 INFO @ Tue, 02 Aug 2022 12:36:28: 61000000 INFO @ Tue, 02 Aug 2022 12:36:31: 67000000 INFO @ Tue, 02 Aug 2022 12:36:34: 62000000 INFO @ Tue, 02 Aug 2022 12:36:36: 68000000 INFO @ Tue, 02 Aug 2022 12:36:39: 63000000 INFO @ Tue, 02 Aug 2022 12:36:42: 69000000 INFO @ Tue, 02 Aug 2022 12:36:45: 64000000 INFO @ Tue, 02 Aug 2022 12:36:47: 70000000 INFO @ Tue, 02 Aug 2022 12:36:50: 65000000 INFO @ Tue, 02 Aug 2022 12:36:52: 71000000 INFO @ Tue, 02 Aug 2022 12:36:54: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:36:56: 66000000 INFO @ Tue, 02 Aug 2022 12:36:58: 72000000 INFO @ Tue, 02 Aug 2022 12:37:02: 67000000 INFO @ Tue, 02 Aug 2022 12:37:02: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:37:02: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:37:02: #1 total tags in treatment: 27134863 INFO @ Tue, 02 Aug 2022 12:37:02: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:37:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:37:03: #1 tags after filtering in treatment: 16536477 INFO @ Tue, 02 Aug 2022 12:37:03: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 02 Aug 2022 12:37:03: #1 finished! INFO @ Tue, 02 Aug 2022 12:37:03: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:37:03: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:37:04: #2 number of paired peaks: 1118 INFO @ Tue, 02 Aug 2022 12:37:04: start model_add_line... INFO @ Tue, 02 Aug 2022 12:37:04: start X-correlation... INFO @ Tue, 02 Aug 2022 12:37:04: end of X-cor INFO @ Tue, 02 Aug 2022 12:37:04: #2 finished! INFO @ Tue, 02 Aug 2022 12:37:04: #2 predicted fragment length is 82 bps INFO @ Tue, 02 Aug 2022 12:37:04: #2 alternative fragment length(s) may be 4,82 bps INFO @ Tue, 02 Aug 2022 12:37:04: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.10_model.r WARNING @ Tue, 02 Aug 2022 12:37:04: #2 Since the d (82) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:37:04: #2 You may need to consider one of the other alternative d(s): 4,82 WARNING @ Tue, 02 Aug 2022 12:37:04: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:37:04: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:37:04: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:37:07: 68000000 INFO @ Tue, 02 Aug 2022 12:37:11: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:37:12: 69000000 INFO @ Tue, 02 Aug 2022 12:37:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:37:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.05_summits.bed INFO @ Tue, 02 Aug 2022 12:37:12: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (19775 records, 4 fields): 118 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:37:16: 70000000 INFO @ Tue, 02 Aug 2022 12:37:21: 71000000 INFO @ Tue, 02 Aug 2022 12:37:26: 72000000 INFO @ Tue, 02 Aug 2022 12:37:29: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:37:29: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:37:29: #1 total tags in treatment: 27134863 INFO @ Tue, 02 Aug 2022 12:37:29: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:37:29: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:37:30: #1 tags after filtering in treatment: 16536477 INFO @ Tue, 02 Aug 2022 12:37:30: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 02 Aug 2022 12:37:30: #1 finished! INFO @ Tue, 02 Aug 2022 12:37:30: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:37:30: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:37:31: #2 number of paired peaks: 1118 INFO @ Tue, 02 Aug 2022 12:37:31: start model_add_line... INFO @ Tue, 02 Aug 2022 12:37:31: start X-correlation... INFO @ Tue, 02 Aug 2022 12:37:31: end of X-cor INFO @ Tue, 02 Aug 2022 12:37:31: #2 finished! INFO @ Tue, 02 Aug 2022 12:37:31: #2 predicted fragment length is 82 bps INFO @ Tue, 02 Aug 2022 12:37:31: #2 alternative fragment length(s) may be 4,82 bps INFO @ Tue, 02 Aug 2022 12:37:31: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.20_model.r WARNING @ Tue, 02 Aug 2022 12:37:31: #2 Since the d (82) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:37:31: #2 You may need to consider one of the other alternative d(s): 4,82 WARNING @ Tue, 02 Aug 2022 12:37:31: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:37:31: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:37:31: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:37:35: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:37:52: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:37:52: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:37:52: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.10_summits.bed INFO @ Tue, 02 Aug 2022 12:37:52: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (11229 records, 4 fields): 68 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:38:04: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:38:20: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:38:20: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:38:20: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178894/SRX12178894.20_summits.bed INFO @ Tue, 02 Aug 2022 12:38:20: Done! pass1 - making usageList (12 chroms): 1 millis pass2 - checking and writing primary data (2776 records, 4 fields): 23 millis CompletedMACS2peakCalling