Job ID = 16436263 SRX = SRX12178893 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:15:44 prefetch.2.10.7: 1) Downloading 'SRR15888021'... 2022-08-02T02:15:44 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:18:17 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:18:17 prefetch.2.10.7: 1) 'SRR15888021' was downloaded successfully 2022-08-02T02:18:17 prefetch.2.10.7: 'SRR15888021' has 0 unresolved dependencies Read 45700641 spots for SRR15888021/SRR15888021.sra Written 45700641 spots for SRR15888021/SRR15888021.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437441 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:58:37 45700641 reads; of these: 45700641 (100.00%) were paired; of these: 14347323 (31.39%) aligned concordantly 0 times 27980826 (61.23%) aligned concordantly exactly 1 time 3372492 (7.38%) aligned concordantly >1 times ---- 14347323 pairs aligned concordantly 0 times; of these: 6220838 (43.36%) aligned discordantly 1 time ---- 8126485 pairs aligned 0 times concordantly or discordantly; of these: 16252970 mates make up the pairs; of these: 9700093 (59.68%) aligned 0 times 4906461 (30.19%) aligned exactly 1 time 1646416 (10.13%) aligned >1 times 89.39% overall alignment rate Time searching: 00:58:37 Overall time: 00:58:37 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 36 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5347759 / 37466960 = 0.1427 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:51:13: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:51:13: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:51:13: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:51:17: 1000000 INFO @ Tue, 02 Aug 2022 12:51:22: 2000000 INFO @ Tue, 02 Aug 2022 12:51:27: 3000000 INFO @ Tue, 02 Aug 2022 12:51:32: 4000000 INFO @ Tue, 02 Aug 2022 12:51:37: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:51:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:51:42: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:51:42: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:51:42: 6000000 INFO @ Tue, 02 Aug 2022 12:51:47: 7000000 INFO @ Tue, 02 Aug 2022 12:51:47: 1000000 INFO @ Tue, 02 Aug 2022 12:51:52: 2000000 INFO @ Tue, 02 Aug 2022 12:51:52: 8000000 INFO @ Tue, 02 Aug 2022 12:51:56: 3000000 INFO @ Tue, 02 Aug 2022 12:51:57: 9000000 INFO @ Tue, 02 Aug 2022 12:52:01: 4000000 INFO @ Tue, 02 Aug 2022 12:52:02: 10000000 INFO @ Tue, 02 Aug 2022 12:52:05: 5000000 INFO @ Tue, 02 Aug 2022 12:52:07: 11000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:52:10: 6000000 INFO @ Tue, 02 Aug 2022 12:52:12: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:52:12: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:52:12: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:52:12: 12000000 INFO @ Tue, 02 Aug 2022 12:52:15: 7000000 INFO @ Tue, 02 Aug 2022 12:52:17: 1000000 INFO @ Tue, 02 Aug 2022 12:52:17: 13000000 INFO @ Tue, 02 Aug 2022 12:52:20: 8000000 INFO @ Tue, 02 Aug 2022 12:52:22: 2000000 INFO @ Tue, 02 Aug 2022 12:52:23: 14000000 INFO @ Tue, 02 Aug 2022 12:52:26: 9000000 INFO @ Tue, 02 Aug 2022 12:52:28: 15000000 INFO @ Tue, 02 Aug 2022 12:52:28: 3000000 INFO @ Tue, 02 Aug 2022 12:52:31: 10000000 INFO @ Tue, 02 Aug 2022 12:52:33: 16000000 INFO @ Tue, 02 Aug 2022 12:52:33: 4000000 INFO @ Tue, 02 Aug 2022 12:52:35: 11000000 INFO @ Tue, 02 Aug 2022 12:52:38: 17000000 INFO @ Tue, 02 Aug 2022 12:52:38: 5000000 INFO @ Tue, 02 Aug 2022 12:52:40: 12000000 INFO @ Tue, 02 Aug 2022 12:52:43: 18000000 INFO @ Tue, 02 Aug 2022 12:52:43: 6000000 INFO @ Tue, 02 Aug 2022 12:52:45: 13000000 INFO @ Tue, 02 Aug 2022 12:52:48: 19000000 INFO @ Tue, 02 Aug 2022 12:52:49: 7000000 INFO @ Tue, 02 Aug 2022 12:52:50: 14000000 INFO @ Tue, 02 Aug 2022 12:52:53: 20000000 INFO @ Tue, 02 Aug 2022 12:52:54: 8000000 INFO @ Tue, 02 Aug 2022 12:52:55: 15000000 INFO @ Tue, 02 Aug 2022 12:52:58: 21000000 INFO @ Tue, 02 Aug 2022 12:53:00: 9000000 INFO @ Tue, 02 Aug 2022 12:53:00: 16000000 INFO @ Tue, 02 Aug 2022 12:53:03: 22000000 INFO @ Tue, 02 Aug 2022 12:53:05: 17000000 INFO @ Tue, 02 Aug 2022 12:53:05: 10000000 INFO @ Tue, 02 Aug 2022 12:53:08: 23000000 INFO @ Tue, 02 Aug 2022 12:53:10: 18000000 INFO @ Tue, 02 Aug 2022 12:53:11: 11000000 INFO @ Tue, 02 Aug 2022 12:53:14: 24000000 INFO @ Tue, 02 Aug 2022 12:53:15: 19000000 INFO @ Tue, 02 Aug 2022 12:53:16: 12000000 INFO @ Tue, 02 Aug 2022 12:53:19: 25000000 INFO @ Tue, 02 Aug 2022 12:53:20: 20000000 INFO @ Tue, 02 Aug 2022 12:53:21: 13000000 INFO @ Tue, 02 Aug 2022 12:53:25: 26000000 INFO @ Tue, 02 Aug 2022 12:53:25: 21000000 INFO @ Tue, 02 Aug 2022 12:53:27: 14000000 INFO @ Tue, 02 Aug 2022 12:53:30: 27000000 INFO @ Tue, 02 Aug 2022 12:53:30: 22000000 INFO @ Tue, 02 Aug 2022 12:53:33: 15000000 INFO @ Tue, 02 Aug 2022 12:53:35: 28000000 INFO @ Tue, 02 Aug 2022 12:53:35: 23000000 INFO @ Tue, 02 Aug 2022 12:53:38: 16000000 INFO @ Tue, 02 Aug 2022 12:53:40: 29000000 INFO @ Tue, 02 Aug 2022 12:53:40: 24000000 INFO @ Tue, 02 Aug 2022 12:53:44: 17000000 INFO @ Tue, 02 Aug 2022 12:53:45: 30000000 INFO @ Tue, 02 Aug 2022 12:53:45: 25000000 INFO @ Tue, 02 Aug 2022 12:53:50: 18000000 INFO @ Tue, 02 Aug 2022 12:53:50: 31000000 INFO @ Tue, 02 Aug 2022 12:53:50: 26000000 INFO @ Tue, 02 Aug 2022 12:53:55: 27000000 INFO @ Tue, 02 Aug 2022 12:53:56: 19000000 INFO @ Tue, 02 Aug 2022 12:53:56: 32000000 INFO @ Tue, 02 Aug 2022 12:54:01: 28000000 INFO @ Tue, 02 Aug 2022 12:54:02: 20000000 INFO @ Tue, 02 Aug 2022 12:54:02: 33000000 INFO @ Tue, 02 Aug 2022 12:54:07: 29000000 INFO @ Tue, 02 Aug 2022 12:54:08: 34000000 INFO @ Tue, 02 Aug 2022 12:54:08: 21000000 INFO @ Tue, 02 Aug 2022 12:54:12: 30000000 INFO @ Tue, 02 Aug 2022 12:54:14: 35000000 INFO @ Tue, 02 Aug 2022 12:54:15: 22000000 INFO @ Tue, 02 Aug 2022 12:54:18: 31000000 INFO @ Tue, 02 Aug 2022 12:54:20: 36000000 INFO @ Tue, 02 Aug 2022 12:54:20: 23000000 INFO @ Tue, 02 Aug 2022 12:54:23: 32000000 INFO @ Tue, 02 Aug 2022 12:54:25: 37000000 INFO @ Tue, 02 Aug 2022 12:54:27: 24000000 INFO @ Tue, 02 Aug 2022 12:54:27: 33000000 INFO @ Tue, 02 Aug 2022 12:54:31: 38000000 INFO @ Tue, 02 Aug 2022 12:54:32: 34000000 INFO @ Tue, 02 Aug 2022 12:54:33: 25000000 INFO @ Tue, 02 Aug 2022 12:54:36: 39000000 INFO @ Tue, 02 Aug 2022 12:54:37: 35000000 INFO @ Tue, 02 Aug 2022 12:54:39: 26000000 INFO @ Tue, 02 Aug 2022 12:54:42: 36000000 INFO @ Tue, 02 Aug 2022 12:54:42: 40000000 INFO @ Tue, 02 Aug 2022 12:54:44: 27000000 INFO @ Tue, 02 Aug 2022 12:54:46: 37000000 INFO @ Tue, 02 Aug 2022 12:54:47: 41000000 INFO @ Tue, 02 Aug 2022 12:54:49: 28000000 INFO @ Tue, 02 Aug 2022 12:54:52: 38000000 INFO @ Tue, 02 Aug 2022 12:54:53: 42000000 INFO @ Tue, 02 Aug 2022 12:54:56: 29000000 INFO @ Tue, 02 Aug 2022 12:54:57: 39000000 INFO @ Tue, 02 Aug 2022 12:54:58: 43000000 INFO @ Tue, 02 Aug 2022 12:55:02: 30000000 INFO @ Tue, 02 Aug 2022 12:55:03: 40000000 INFO @ Tue, 02 Aug 2022 12:55:03: 44000000 INFO @ Tue, 02 Aug 2022 12:55:08: 31000000 INFO @ Tue, 02 Aug 2022 12:55:08: 45000000 INFO @ Tue, 02 Aug 2022 12:55:09: 41000000 INFO @ Tue, 02 Aug 2022 12:55:14: 32000000 INFO @ Tue, 02 Aug 2022 12:55:14: 46000000 INFO @ Tue, 02 Aug 2022 12:55:14: 42000000 INFO @ Tue, 02 Aug 2022 12:55:19: 47000000 INFO @ Tue, 02 Aug 2022 12:55:19: 43000000 INFO @ Tue, 02 Aug 2022 12:55:19: 33000000 INFO @ Tue, 02 Aug 2022 12:55:24: 48000000 INFO @ Tue, 02 Aug 2022 12:55:24: 44000000 INFO @ Tue, 02 Aug 2022 12:55:25: 34000000 INFO @ Tue, 02 Aug 2022 12:55:29: 45000000 INFO @ Tue, 02 Aug 2022 12:55:29: 49000000 INFO @ Tue, 02 Aug 2022 12:55:30: 35000000 INFO @ Tue, 02 Aug 2022 12:55:34: 46000000 INFO @ Tue, 02 Aug 2022 12:55:35: 50000000 INFO @ Tue, 02 Aug 2022 12:55:36: 36000000 INFO @ Tue, 02 Aug 2022 12:55:38: 47000000 INFO @ Tue, 02 Aug 2022 12:55:41: 51000000 INFO @ Tue, 02 Aug 2022 12:55:42: 37000000 INFO @ Tue, 02 Aug 2022 12:55:43: 48000000 INFO @ Tue, 02 Aug 2022 12:55:47: 52000000 INFO @ Tue, 02 Aug 2022 12:55:48: 49000000 INFO @ Tue, 02 Aug 2022 12:55:48: 38000000 INFO @ Tue, 02 Aug 2022 12:55:53: 53000000 INFO @ Tue, 02 Aug 2022 12:55:53: 50000000 INFO @ Tue, 02 Aug 2022 12:55:54: 39000000 INFO @ Tue, 02 Aug 2022 12:55:58: 51000000 INFO @ Tue, 02 Aug 2022 12:55:58: 54000000 INFO @ Tue, 02 Aug 2022 12:55:59: 40000000 INFO @ Tue, 02 Aug 2022 12:56:03: 52000000 INFO @ Tue, 02 Aug 2022 12:56:04: 41000000 INFO @ Tue, 02 Aug 2022 12:56:04: 55000000 INFO @ Tue, 02 Aug 2022 12:56:09: 53000000 INFO @ Tue, 02 Aug 2022 12:56:10: 42000000 INFO @ Tue, 02 Aug 2022 12:56:10: 56000000 INFO @ Tue, 02 Aug 2022 12:56:14: 54000000 INFO @ Tue, 02 Aug 2022 12:56:15: 43000000 INFO @ Tue, 02 Aug 2022 12:56:15: 57000000 INFO @ Tue, 02 Aug 2022 12:56:20: 44000000 INFO @ Tue, 02 Aug 2022 12:56:21: 58000000 INFO @ Tue, 02 Aug 2022 12:56:21: 55000000 INFO @ Tue, 02 Aug 2022 12:56:26: 45000000 INFO @ Tue, 02 Aug 2022 12:56:27: 59000000 INFO @ Tue, 02 Aug 2022 12:56:28: 56000000 INFO @ Tue, 02 Aug 2022 12:56:31: 46000000 INFO @ Tue, 02 Aug 2022 12:56:32: 60000000 INFO @ Tue, 02 Aug 2022 12:56:34: 57000000 INFO @ Tue, 02 Aug 2022 12:56:37: 47000000 INFO @ Tue, 02 Aug 2022 12:56:38: 61000000 INFO @ Tue, 02 Aug 2022 12:56:39: 58000000 INFO @ Tue, 02 Aug 2022 12:56:42: 48000000 INFO @ Tue, 02 Aug 2022 12:56:44: 62000000 INFO @ Tue, 02 Aug 2022 12:56:44: 59000000 INFO @ Tue, 02 Aug 2022 12:56:48: 49000000 INFO @ Tue, 02 Aug 2022 12:56:49: 63000000 INFO @ Tue, 02 Aug 2022 12:56:50: 60000000 INFO @ Tue, 02 Aug 2022 12:56:54: 50000000 INFO @ Tue, 02 Aug 2022 12:56:55: 64000000 INFO @ Tue, 02 Aug 2022 12:56:55: 61000000 INFO @ Tue, 02 Aug 2022 12:57:00: 51000000 INFO @ Tue, 02 Aug 2022 12:57:00: 62000000 INFO @ Tue, 02 Aug 2022 12:57:00: 65000000 INFO @ Tue, 02 Aug 2022 12:57:05: 63000000 INFO @ Tue, 02 Aug 2022 12:57:06: 52000000 INFO @ Tue, 02 Aug 2022 12:57:07: 66000000 INFO @ Tue, 02 Aug 2022 12:57:10: 64000000 INFO @ Tue, 02 Aug 2022 12:57:12: 53000000 INFO @ Tue, 02 Aug 2022 12:57:13: 67000000 INFO @ Tue, 02 Aug 2022 12:57:15: 65000000 INFO @ Tue, 02 Aug 2022 12:57:18: 54000000 INFO @ Tue, 02 Aug 2022 12:57:19: 68000000 INFO @ Tue, 02 Aug 2022 12:57:21: 66000000 INFO @ Tue, 02 Aug 2022 12:57:23: 55000000 INFO @ Tue, 02 Aug 2022 12:57:25: 69000000 INFO @ Tue, 02 Aug 2022 12:57:26: 67000000 INFO @ Tue, 02 Aug 2022 12:57:28: 56000000 INFO @ Tue, 02 Aug 2022 12:57:30: 70000000 INFO @ Tue, 02 Aug 2022 12:57:31: 68000000 INFO @ Tue, 02 Aug 2022 12:57:34: 57000000 INFO @ Tue, 02 Aug 2022 12:57:37: 69000000 INFO @ Tue, 02 Aug 2022 12:57:37: 71000000 INFO @ Tue, 02 Aug 2022 12:57:38: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:57:38: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:57:38: #1 total tags in treatment: 26565216 INFO @ Tue, 02 Aug 2022 12:57:38: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:57:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:57:38: #1 tags after filtering in treatment: 16307395 INFO @ Tue, 02 Aug 2022 12:57:38: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 02 Aug 2022 12:57:38: #1 finished! INFO @ Tue, 02 Aug 2022 12:57:38: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:57:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:57:39: 58000000 INFO @ Tue, 02 Aug 2022 12:57:39: #2 number of paired peaks: 1116 INFO @ Tue, 02 Aug 2022 12:57:39: start model_add_line... INFO @ Tue, 02 Aug 2022 12:57:40: start X-correlation... INFO @ Tue, 02 Aug 2022 12:57:40: end of X-cor INFO @ Tue, 02 Aug 2022 12:57:40: #2 finished! INFO @ Tue, 02 Aug 2022 12:57:40: #2 predicted fragment length is 71 bps INFO @ Tue, 02 Aug 2022 12:57:40: #2 alternative fragment length(s) may be 4,71 bps INFO @ Tue, 02 Aug 2022 12:57:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.05_model.r WARNING @ Tue, 02 Aug 2022 12:57:40: #2 Since the d (71) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:57:40: #2 You may need to consider one of the other alternative d(s): 4,71 WARNING @ Tue, 02 Aug 2022 12:57:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:57:40: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:57:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:57:42: 70000000 INFO @ Tue, 02 Aug 2022 12:57:44: 59000000 INFO @ Tue, 02 Aug 2022 12:57:47: 71000000 INFO @ Tue, 02 Aug 2022 12:57:48: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:57:48: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:57:48: #1 total tags in treatment: 26565216 INFO @ Tue, 02 Aug 2022 12:57:48: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:57:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:57:48: #1 tags after filtering in treatment: 16307395 INFO @ Tue, 02 Aug 2022 12:57:48: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 02 Aug 2022 12:57:48: #1 finished! INFO @ Tue, 02 Aug 2022 12:57:48: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:57:48: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:57:49: 60000000 INFO @ Tue, 02 Aug 2022 12:57:49: #2 number of paired peaks: 1116 INFO @ Tue, 02 Aug 2022 12:57:49: start model_add_line... INFO @ Tue, 02 Aug 2022 12:57:50: start X-correlation... INFO @ Tue, 02 Aug 2022 12:57:50: end of X-cor INFO @ Tue, 02 Aug 2022 12:57:50: #2 finished! INFO @ Tue, 02 Aug 2022 12:57:50: #2 predicted fragment length is 71 bps INFO @ Tue, 02 Aug 2022 12:57:50: #2 alternative fragment length(s) may be 4,71 bps INFO @ Tue, 02 Aug 2022 12:57:50: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.10_model.r WARNING @ Tue, 02 Aug 2022 12:57:50: #2 Since the d (71) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:57:50: #2 You may need to consider one of the other alternative d(s): 4,71 WARNING @ Tue, 02 Aug 2022 12:57:50: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:57:50: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:57:50: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:57:54: 61000000 INFO @ Tue, 02 Aug 2022 12:57:58: 62000000 INFO @ Tue, 02 Aug 2022 12:58:03: 63000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:58:08: 64000000 INFO @ Tue, 02 Aug 2022 12:58:12: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:58:13: 65000000 INFO @ Tue, 02 Aug 2022 12:58:19: 66000000 INFO @ Tue, 02 Aug 2022 12:58:20: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:58:24: 67000000 INFO @ Tue, 02 Aug 2022 12:58:30: 68000000 INFO @ Tue, 02 Aug 2022 12:58:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:58:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:58:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.05_summits.bed INFO @ Tue, 02 Aug 2022 12:58:31: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (20656 records, 4 fields): 54 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:58:35: 69000000 INFO @ Tue, 02 Aug 2022 12:58:36: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:58:36: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:58:36: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.10_summits.bed INFO @ Tue, 02 Aug 2022 12:58:36: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (11098 records, 4 fields): 43 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:58:40: 70000000 INFO @ Tue, 02 Aug 2022 12:58:45: 71000000 INFO @ Tue, 02 Aug 2022 12:58:46: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:58:46: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:58:46: #1 total tags in treatment: 26565216 INFO @ Tue, 02 Aug 2022 12:58:46: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:58:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:58:47: #1 tags after filtering in treatment: 16307395 INFO @ Tue, 02 Aug 2022 12:58:47: #1 Redundant rate of treatment: 0.39 INFO @ Tue, 02 Aug 2022 12:58:47: #1 finished! INFO @ Tue, 02 Aug 2022 12:58:47: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:58:47: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:58:48: #2 number of paired peaks: 1116 INFO @ Tue, 02 Aug 2022 12:58:48: start model_add_line... INFO @ Tue, 02 Aug 2022 12:58:48: start X-correlation... INFO @ Tue, 02 Aug 2022 12:58:48: end of X-cor INFO @ Tue, 02 Aug 2022 12:58:48: #2 finished! INFO @ Tue, 02 Aug 2022 12:58:48: #2 predicted fragment length is 71 bps INFO @ Tue, 02 Aug 2022 12:58:48: #2 alternative fragment length(s) may be 4,71 bps INFO @ Tue, 02 Aug 2022 12:58:48: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.20_model.r WARNING @ Tue, 02 Aug 2022 12:58:48: #2 Since the d (71) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:58:48: #2 You may need to consider one of the other alternative d(s): 4,71 WARNING @ Tue, 02 Aug 2022 12:58:48: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:58:48: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:58:48: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:59:18: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:59:33: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:59:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:59:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178893/SRX12178893.20_summits.bed INFO @ Tue, 02 Aug 2022 12:59:34: Done! pass1 - making usageList (13 chroms): 1 millis pass2 - checking and writing primary data (2021 records, 4 fields): 22 millis CompletedMACS2peakCalling BigWig に変換しました。