Job ID = 16436237 SRX = SRX12178880 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:10:52 prefetch.2.10.7: 1) Downloading 'SRR15888034'... 2022-08-02T02:10:52 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:12:45 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:12:45 prefetch.2.10.7: 1) 'SRR15888034' was downloaded successfully 2022-08-02T02:12:45 prefetch.2.10.7: 'SRR15888034' has 0 unresolved dependencies Read 34718599 spots for SRR15888034/SRR15888034.sra Written 34718599 spots for SRR15888034/SRR15888034.sra fastq に変換しました。 bowtie でマッピング中... Your job 16436814 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:31:31 34718599 reads; of these: 34718599 (100.00%) were paired; of these: 10568936 (30.44%) aligned concordantly 0 times 21466802 (61.83%) aligned concordantly exactly 1 time 2682861 (7.73%) aligned concordantly >1 times ---- 10568936 pairs aligned concordantly 0 times; of these: 4086224 (38.66%) aligned discordantly 1 time ---- 6482712 pairs aligned 0 times concordantly or discordantly; of these: 12965424 mates make up the pairs; of these: 8305665 (64.06%) aligned 0 times 3544549 (27.34%) aligned exactly 1 time 1115210 (8.60%) aligned >1 times 88.04% overall alignment rate Time searching: 00:31:31 Overall time: 00:31:31 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 28 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 5417828 / 28124033 = 0.1926 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:00:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:00:16: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:00:16: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:00:22: 1000000 INFO @ Tue, 02 Aug 2022 12:00:28: 2000000 INFO @ Tue, 02 Aug 2022 12:00:34: 3000000 INFO @ Tue, 02 Aug 2022 12:00:40: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:00:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:00:45: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:00:45: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:00:46: 5000000 INFO @ Tue, 02 Aug 2022 12:00:51: 1000000 INFO @ Tue, 02 Aug 2022 12:00:52: 6000000 INFO @ Tue, 02 Aug 2022 12:00:58: 2000000 INFO @ Tue, 02 Aug 2022 12:00:58: 7000000 INFO @ Tue, 02 Aug 2022 12:01:04: 3000000 INFO @ Tue, 02 Aug 2022 12:01:05: 8000000 INFO @ Tue, 02 Aug 2022 12:01:10: 4000000 INFO @ Tue, 02 Aug 2022 12:01:11: 9000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:01:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:01:15: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:01:15: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:01:16: 5000000 INFO @ Tue, 02 Aug 2022 12:01:18: 10000000 INFO @ Tue, 02 Aug 2022 12:01:22: 1000000 INFO @ Tue, 02 Aug 2022 12:01:22: 6000000 INFO @ Tue, 02 Aug 2022 12:01:24: 11000000 INFO @ Tue, 02 Aug 2022 12:01:28: 2000000 INFO @ Tue, 02 Aug 2022 12:01:28: 7000000 INFO @ Tue, 02 Aug 2022 12:01:30: 12000000 INFO @ Tue, 02 Aug 2022 12:01:34: 3000000 INFO @ Tue, 02 Aug 2022 12:01:34: 8000000 INFO @ Tue, 02 Aug 2022 12:01:37: 13000000 INFO @ Tue, 02 Aug 2022 12:01:40: 4000000 INFO @ Tue, 02 Aug 2022 12:01:41: 9000000 INFO @ Tue, 02 Aug 2022 12:01:44: 14000000 INFO @ Tue, 02 Aug 2022 12:01:47: 5000000 INFO @ Tue, 02 Aug 2022 12:01:47: 10000000 INFO @ Tue, 02 Aug 2022 12:01:50: 15000000 INFO @ Tue, 02 Aug 2022 12:01:53: 6000000 INFO @ Tue, 02 Aug 2022 12:01:53: 11000000 INFO @ Tue, 02 Aug 2022 12:01:56: 16000000 INFO @ Tue, 02 Aug 2022 12:01:59: 12000000 INFO @ Tue, 02 Aug 2022 12:02:00: 7000000 INFO @ Tue, 02 Aug 2022 12:02:02: 17000000 INFO @ Tue, 02 Aug 2022 12:02:06: 13000000 INFO @ Tue, 02 Aug 2022 12:02:06: 8000000 INFO @ Tue, 02 Aug 2022 12:02:08: 18000000 INFO @ Tue, 02 Aug 2022 12:02:12: 14000000 INFO @ Tue, 02 Aug 2022 12:02:13: 9000000 INFO @ Tue, 02 Aug 2022 12:02:14: 19000000 INFO @ Tue, 02 Aug 2022 12:02:18: 15000000 INFO @ Tue, 02 Aug 2022 12:02:19: 10000000 INFO @ Tue, 02 Aug 2022 12:02:20: 20000000 INFO @ Tue, 02 Aug 2022 12:02:24: 16000000 INFO @ Tue, 02 Aug 2022 12:02:25: 11000000 INFO @ Tue, 02 Aug 2022 12:02:26: 21000000 INFO @ Tue, 02 Aug 2022 12:02:30: 17000000 INFO @ Tue, 02 Aug 2022 12:02:31: 12000000 INFO @ Tue, 02 Aug 2022 12:02:32: 22000000 INFO @ Tue, 02 Aug 2022 12:02:36: 18000000 INFO @ Tue, 02 Aug 2022 12:02:37: 13000000 INFO @ Tue, 02 Aug 2022 12:02:38: 23000000 INFO @ Tue, 02 Aug 2022 12:02:42: 19000000 INFO @ Tue, 02 Aug 2022 12:02:43: 14000000 INFO @ Tue, 02 Aug 2022 12:02:44: 24000000 INFO @ Tue, 02 Aug 2022 12:02:48: 20000000 INFO @ Tue, 02 Aug 2022 12:02:49: 15000000 INFO @ Tue, 02 Aug 2022 12:02:50: 25000000 INFO @ Tue, 02 Aug 2022 12:02:54: 21000000 INFO @ Tue, 02 Aug 2022 12:02:55: 16000000 INFO @ Tue, 02 Aug 2022 12:02:57: 26000000 INFO @ Tue, 02 Aug 2022 12:03:00: 22000000 INFO @ Tue, 02 Aug 2022 12:03:01: 17000000 INFO @ Tue, 02 Aug 2022 12:03:03: 27000000 INFO @ Tue, 02 Aug 2022 12:03:06: 23000000 INFO @ Tue, 02 Aug 2022 12:03:07: 18000000 INFO @ Tue, 02 Aug 2022 12:03:09: 28000000 INFO @ Tue, 02 Aug 2022 12:03:12: 24000000 INFO @ Tue, 02 Aug 2022 12:03:13: 19000000 INFO @ Tue, 02 Aug 2022 12:03:15: 29000000 INFO @ Tue, 02 Aug 2022 12:03:18: 25000000 INFO @ Tue, 02 Aug 2022 12:03:19: 20000000 INFO @ Tue, 02 Aug 2022 12:03:21: 30000000 INFO @ Tue, 02 Aug 2022 12:03:24: 26000000 INFO @ Tue, 02 Aug 2022 12:03:25: 21000000 INFO @ Tue, 02 Aug 2022 12:03:27: 31000000 INFO @ Tue, 02 Aug 2022 12:03:31: 27000000 INFO @ Tue, 02 Aug 2022 12:03:31: 22000000 INFO @ Tue, 02 Aug 2022 12:03:33: 32000000 INFO @ Tue, 02 Aug 2022 12:03:37: 28000000 INFO @ Tue, 02 Aug 2022 12:03:37: 23000000 INFO @ Tue, 02 Aug 2022 12:03:39: 33000000 INFO @ Tue, 02 Aug 2022 12:03:42: 29000000 INFO @ Tue, 02 Aug 2022 12:03:43: 24000000 INFO @ Tue, 02 Aug 2022 12:03:44: 34000000 INFO @ Tue, 02 Aug 2022 12:03:48: 30000000 INFO @ Tue, 02 Aug 2022 12:03:49: 25000000 INFO @ Tue, 02 Aug 2022 12:03:50: 35000000 INFO @ Tue, 02 Aug 2022 12:03:55: 31000000 INFO @ Tue, 02 Aug 2022 12:03:55: 26000000 INFO @ Tue, 02 Aug 2022 12:03:56: 36000000 INFO @ Tue, 02 Aug 2022 12:04:00: 32000000 INFO @ Tue, 02 Aug 2022 12:04:01: 27000000 INFO @ Tue, 02 Aug 2022 12:04:03: 37000000 INFO @ Tue, 02 Aug 2022 12:04:07: 33000000 INFO @ Tue, 02 Aug 2022 12:04:07: 28000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 12:04:09: 38000000 INFO @ Tue, 02 Aug 2022 12:04:12: 34000000 INFO @ Tue, 02 Aug 2022 12:04:13: 29000000 INFO @ Tue, 02 Aug 2022 12:04:15: 39000000 INFO @ Tue, 02 Aug 2022 12:04:18: 35000000 INFO @ Tue, 02 Aug 2022 12:04:19: 30000000 INFO @ Tue, 02 Aug 2022 12:04:21: 40000000 INFO @ Tue, 02 Aug 2022 12:04:24: 36000000 INFO @ Tue, 02 Aug 2022 12:04:25: 31000000 INFO @ Tue, 02 Aug 2022 12:04:27: 41000000 INFO @ Tue, 02 Aug 2022 12:04:31: 37000000 INFO @ Tue, 02 Aug 2022 12:04:31: 32000000 INFO @ Tue, 02 Aug 2022 12:04:33: 42000000 INFO @ Tue, 02 Aug 2022 12:04:37: 38000000 INFO @ Tue, 02 Aug 2022 12:04:37: 33000000 INFO @ Tue, 02 Aug 2022 12:04:40: 43000000 INFO @ Tue, 02 Aug 2022 12:04:43: 39000000 INFO @ Tue, 02 Aug 2022 12:04:43: 34000000 INFO @ Tue, 02 Aug 2022 12:04:46: 44000000 INFO @ Tue, 02 Aug 2022 12:04:49: 35000000 INFO @ Tue, 02 Aug 2022 12:04:49: 40000000 INFO @ Tue, 02 Aug 2022 12:04:52: 45000000 INFO @ Tue, 02 Aug 2022 12:04:55: 36000000 INFO @ Tue, 02 Aug 2022 12:04:55: 41000000 INFO @ Tue, 02 Aug 2022 12:04:58: 46000000 INFO @ Tue, 02 Aug 2022 12:05:01: 37000000 INFO @ Tue, 02 Aug 2022 12:05:01: 42000000 INFO @ Tue, 02 Aug 2022 12:05:04: 47000000 INFO @ Tue, 02 Aug 2022 12:05:07: 38000000 INFO @ Tue, 02 Aug 2022 12:05:08: 43000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 12:05:10: 48000000 INFO @ Tue, 02 Aug 2022 12:05:13: 39000000 INFO @ Tue, 02 Aug 2022 12:05:14: 44000000 INFO @ Tue, 02 Aug 2022 12:05:17: 49000000 INFO @ Tue, 02 Aug 2022 12:05:20: 40000000 INFO @ Tue, 02 Aug 2022 12:05:21: 45000000 INFO @ Tue, 02 Aug 2022 12:05:23: 50000000 INFO @ Tue, 02 Aug 2022 12:05:25: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:05:25: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:05:25: #1 total tags in treatment: 19284778 INFO @ Tue, 02 Aug 2022 12:05:25: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:05:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:05:25: #1 tags after filtering in treatment: 12988244 INFO @ Tue, 02 Aug 2022 12:05:25: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 12:05:25: #1 finished! INFO @ Tue, 02 Aug 2022 12:05:25: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:05:25: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:05:26: 41000000 INFO @ Tue, 02 Aug 2022 12:05:26: #2 number of paired peaks: 1606 INFO @ Tue, 02 Aug 2022 12:05:26: start model_add_line... INFO @ Tue, 02 Aug 2022 12:05:26: start X-correlation... INFO @ Tue, 02 Aug 2022 12:05:26: end of X-cor INFO @ Tue, 02 Aug 2022 12:05:26: #2 finished! INFO @ Tue, 02 Aug 2022 12:05:26: #2 predicted fragment length is 52 bps INFO @ Tue, 02 Aug 2022 12:05:26: #2 alternative fragment length(s) may be 4,52 bps INFO @ Tue, 02 Aug 2022 12:05:26: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.05_model.r WARNING @ Tue, 02 Aug 2022 12:05:27: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:05:27: #2 You may need to consider one of the other alternative d(s): 4,52 WARNING @ Tue, 02 Aug 2022 12:05:27: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:05:27: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:05:27: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:05:27: 46000000 INFO @ Tue, 02 Aug 2022 12:05:33: 42000000 INFO @ Tue, 02 Aug 2022 12:05:33: 47000000 INFO @ Tue, 02 Aug 2022 12:05:39: 43000000 INFO @ Tue, 02 Aug 2022 12:05:40: 48000000 INFO @ Tue, 02 Aug 2022 12:05:46: 49000000 INFO @ Tue, 02 Aug 2022 12:05:46: 44000000 INFO @ Tue, 02 Aug 2022 12:05:50: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:05:52: 50000000 INFO @ Tue, 02 Aug 2022 12:05:52: 45000000 INFO @ Tue, 02 Aug 2022 12:05:54: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:05:54: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:05:54: #1 total tags in treatment: 19284778 INFO @ Tue, 02 Aug 2022 12:05:54: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:05:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:05:54: #1 tags after filtering in treatment: 12988244 INFO @ Tue, 02 Aug 2022 12:05:54: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 12:05:54: #1 finished! INFO @ Tue, 02 Aug 2022 12:05:54: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:05:54: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:05:55: #2 number of paired peaks: 1606 INFO @ Tue, 02 Aug 2022 12:05:55: start model_add_line... INFO @ Tue, 02 Aug 2022 12:05:55: start X-correlation... INFO @ Tue, 02 Aug 2022 12:05:55: end of X-cor INFO @ Tue, 02 Aug 2022 12:05:55: #2 finished! INFO @ Tue, 02 Aug 2022 12:05:55: #2 predicted fragment length is 52 bps INFO @ Tue, 02 Aug 2022 12:05:55: #2 alternative fragment length(s) may be 4,52 bps INFO @ Tue, 02 Aug 2022 12:05:55: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.10_model.r WARNING @ Tue, 02 Aug 2022 12:05:55: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:05:55: #2 You may need to consider one of the other alternative d(s): 4,52 WARNING @ Tue, 02 Aug 2022 12:05:55: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:05:55: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:05:55: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:05:58: 46000000 INFO @ Tue, 02 Aug 2022 12:06:03: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.05_peaks.xls INFO @ Tue, 02 Aug 2022 12:06:03: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:06:03: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.05_summits.bed INFO @ Tue, 02 Aug 2022 12:06:03: Done! INFO @ Tue, 02 Aug 2022 12:06:04: 47000000 pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (19295 records, 4 fields): 36 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:06:09: 48000000 INFO @ Tue, 02 Aug 2022 12:06:15: 49000000 INFO @ Tue, 02 Aug 2022 12:06:19: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:06:21: 50000000 INFO @ Tue, 02 Aug 2022 12:06:23: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 12:06:23: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 12:06:23: #1 total tags in treatment: 19284778 INFO @ Tue, 02 Aug 2022 12:06:23: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 12:06:23: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 12:06:23: #1 tags after filtering in treatment: 12988244 INFO @ Tue, 02 Aug 2022 12:06:23: #1 Redundant rate of treatment: 0.33 INFO @ Tue, 02 Aug 2022 12:06:23: #1 finished! INFO @ Tue, 02 Aug 2022 12:06:23: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 12:06:23: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 12:06:24: #2 number of paired peaks: 1606 INFO @ Tue, 02 Aug 2022 12:06:24: start model_add_line... INFO @ Tue, 02 Aug 2022 12:06:24: start X-correlation... INFO @ Tue, 02 Aug 2022 12:06:24: end of X-cor INFO @ Tue, 02 Aug 2022 12:06:24: #2 finished! INFO @ Tue, 02 Aug 2022 12:06:24: #2 predicted fragment length is 52 bps INFO @ Tue, 02 Aug 2022 12:06:24: #2 alternative fragment length(s) may be 4,52 bps INFO @ Tue, 02 Aug 2022 12:06:24: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.20_model.r WARNING @ Tue, 02 Aug 2022 12:06:24: #2 Since the d (52) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 12:06:24: #2 You may need to consider one of the other alternative d(s): 4,52 WARNING @ Tue, 02 Aug 2022 12:06:24: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 12:06:24: #3 Call peaks... INFO @ Tue, 02 Aug 2022 12:06:24: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 12:06:31: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.10_peaks.xls INFO @ Tue, 02 Aug 2022 12:06:31: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:06:31: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.10_summits.bed INFO @ Tue, 02 Aug 2022 12:06:31: Done! pass1 - making usageList (15 chroms): 2 millis pass2 - checking and writing primary data (7991 records, 4 fields): 20 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 12:06:48: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 12:07:00: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.20_peaks.xls INFO @ Tue, 02 Aug 2022 12:07:00: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 12:07:00: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178880/SRX12178880.20_summits.bed INFO @ Tue, 02 Aug 2022 12:07:00: Done! pass1 - making usageList (9 chroms): 1 millis pass2 - checking and writing primary data (414 records, 4 fields): 138 millis CompletedMACS2peakCalling