Job ID = 16436234 SRX = SRX12178878 Genome = dm3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2022-08-02T02:10:37 prefetch.2.10.7: 1) Downloading 'SRR15888036'... 2022-08-02T02:10:37 prefetch.2.10.7: Downloading via HTTPS... 2022-08-02T02:13:27 prefetch.2.10.7: HTTPS download succeed 2022-08-02T02:13:27 prefetch.2.10.7: 1) 'SRR15888036' was downloaded successfully 2022-08-02T02:13:27 prefetch.2.10.7: 'SRR15888036' has 0 unresolved dependencies Read 51638361 spots for SRR15888036/SRR15888036.sra Written 51638361 spots for SRR15888036/SRR15888036.sra fastq に変換しました。 bowtie でマッピング中... Your job 16437452 ("srTdm6") has been submitted Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 01:07:18 51638361 reads; of these: 51638361 (100.00%) were paired; of these: 15578043 (30.17%) aligned concordantly 0 times 31407746 (60.82%) aligned concordantly exactly 1 time 4652572 (9.01%) aligned concordantly >1 times ---- 15578043 pairs aligned concordantly 0 times; of these: 6553430 (42.07%) aligned discordantly 1 time ---- 9024613 pairs aligned 0 times concordantly or discordantly; of these: 18049226 mates make up the pairs; of these: 10528834 (58.33%) aligned 0 times 5589554 (30.97%) aligned exactly 1 time 1930838 (10.70%) aligned >1 times 89.81% overall alignment rate Time searching: 01:07:18 Overall time: 01:07:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 15 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chr2L... [bam_rmdup_core] processing reference chr2LHet... [bam_rmdup_core] processing reference chr2R... [bam_rmdup_core] processing reference chr2RHet... [bam_rmdup_core] processing reference chr3L... [bam_rmdup_core] processing reference chr3LHet... [bam_rmdup_core] processing reference chr3R... [bam_rmdup_core] processing reference chr3RHet... [bam_rmdup_core] processing reference chr4... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrU... [bam_rmdup_core] processing reference chrUextra... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXHet... [bam_rmdup_core] processing reference chrYHet... [bam_rmdup_core] 6975746 / 42489279 = 0.1642 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:55:24: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:55:24: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:55:24: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:55:31: 1000000 INFO @ Tue, 02 Aug 2022 12:55:37: 2000000 INFO @ Tue, 02 Aug 2022 12:55:43: 3000000 INFO @ Tue, 02 Aug 2022 12:55:49: 4000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:55:53: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:55:53: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:55:53: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:55:56: 5000000 INFO @ Tue, 02 Aug 2022 12:56:00: 1000000 INFO @ Tue, 02 Aug 2022 12:56:02: 6000000 INFO @ Tue, 02 Aug 2022 12:56:06: 2000000 INFO @ Tue, 02 Aug 2022 12:56:10: 7000000 INFO @ Tue, 02 Aug 2022 12:56:14: 3000000 INFO @ Tue, 02 Aug 2022 12:56:17: 8000000 INFO @ Tue, 02 Aug 2022 12:56:20: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.7/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Tue, 02 Aug 2022 12:56:23: # Command line: callpeak -t /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.bam -f BAM -g dm -n /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.bam'] # control file = None # effective genome size = 1.20e+08 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Tue, 02 Aug 2022 12:56:23: #1 read tag files... INFO @ Tue, 02 Aug 2022 12:56:23: #1 read treatment tags... INFO @ Tue, 02 Aug 2022 12:56:24: 9000000 INFO @ Tue, 02 Aug 2022 12:56:27: 5000000 INFO @ Tue, 02 Aug 2022 12:56:30: 1000000 INFO @ Tue, 02 Aug 2022 12:56:31: 10000000 INFO @ Tue, 02 Aug 2022 12:56:33: 6000000 INFO @ Tue, 02 Aug 2022 12:56:37: 2000000 INFO @ Tue, 02 Aug 2022 12:56:38: 11000000 INFO @ Tue, 02 Aug 2022 12:56:40: 7000000 INFO @ Tue, 02 Aug 2022 12:56:44: 3000000 INFO @ Tue, 02 Aug 2022 12:56:45: 12000000 INFO @ Tue, 02 Aug 2022 12:56:46: 8000000 INFO @ Tue, 02 Aug 2022 12:56:51: 4000000 INFO @ Tue, 02 Aug 2022 12:56:52: 13000000 INFO @ Tue, 02 Aug 2022 12:56:53: 9000000 INFO @ Tue, 02 Aug 2022 12:56:58: 5000000 INFO @ Tue, 02 Aug 2022 12:57:00: 10000000 INFO @ Tue, 02 Aug 2022 12:57:00: 14000000 INFO @ Tue, 02 Aug 2022 12:57:05: 6000000 INFO @ Tue, 02 Aug 2022 12:57:06: 11000000 INFO @ Tue, 02 Aug 2022 12:57:07: 15000000 INFO @ Tue, 02 Aug 2022 12:57:12: 7000000 INFO @ Tue, 02 Aug 2022 12:57:13: 12000000 INFO @ Tue, 02 Aug 2022 12:57:14: 16000000 INFO @ Tue, 02 Aug 2022 12:57:19: 8000000 INFO @ Tue, 02 Aug 2022 12:57:20: 13000000 INFO @ Tue, 02 Aug 2022 12:57:21: 17000000 INFO @ Tue, 02 Aug 2022 12:57:26: 9000000 INFO @ Tue, 02 Aug 2022 12:57:27: 14000000 INFO @ Tue, 02 Aug 2022 12:57:28: 18000000 INFO @ Tue, 02 Aug 2022 12:57:33: 10000000 INFO @ Tue, 02 Aug 2022 12:57:33: 15000000 INFO @ Tue, 02 Aug 2022 12:57:35: 19000000 INFO @ Tue, 02 Aug 2022 12:57:40: 16000000 INFO @ Tue, 02 Aug 2022 12:57:40: 11000000 INFO @ Tue, 02 Aug 2022 12:57:43: 20000000 INFO @ Tue, 02 Aug 2022 12:57:47: 17000000 INFO @ Tue, 02 Aug 2022 12:57:47: 12000000 INFO @ Tue, 02 Aug 2022 12:57:50: 21000000 INFO @ Tue, 02 Aug 2022 12:57:53: 18000000 INFO @ Tue, 02 Aug 2022 12:57:55: 13000000 INFO @ Tue, 02 Aug 2022 12:57:57: 22000000 INFO @ Tue, 02 Aug 2022 12:58:00: 19000000 INFO @ Tue, 02 Aug 2022 12:58:02: 14000000 INFO @ Tue, 02 Aug 2022 12:58:03: 23000000 INFO @ Tue, 02 Aug 2022 12:58:07: 20000000 INFO @ Tue, 02 Aug 2022 12:58:09: 15000000 INFO @ Tue, 02 Aug 2022 12:58:10: 24000000 INFO @ Tue, 02 Aug 2022 12:58:13: 21000000 INFO @ Tue, 02 Aug 2022 12:58:16: 16000000 INFO @ Tue, 02 Aug 2022 12:58:17: 25000000 INFO @ Tue, 02 Aug 2022 12:58:20: 22000000 INFO @ Tue, 02 Aug 2022 12:58:23: 17000000 INFO @ Tue, 02 Aug 2022 12:58:23: 26000000 INFO @ Tue, 02 Aug 2022 12:58:26: 23000000 INFO @ Tue, 02 Aug 2022 12:58:30: 18000000 INFO @ Tue, 02 Aug 2022 12:58:31: 27000000 INFO @ Tue, 02 Aug 2022 12:58:32: 24000000 INFO @ Tue, 02 Aug 2022 12:58:37: 19000000 INFO @ Tue, 02 Aug 2022 12:58:39: 28000000 INFO @ Tue, 02 Aug 2022 12:58:39: 25000000 INFO @ Tue, 02 Aug 2022 12:58:44: 20000000 INFO @ Tue, 02 Aug 2022 12:58:45: 26000000 INFO @ Tue, 02 Aug 2022 12:58:45: 29000000 INFO @ Tue, 02 Aug 2022 12:58:51: 21000000 INFO @ Tue, 02 Aug 2022 12:58:52: 27000000 INFO @ Tue, 02 Aug 2022 12:58:52: 30000000 INFO @ Tue, 02 Aug 2022 12:58:58: 22000000 INFO @ Tue, 02 Aug 2022 12:58:58: 28000000 INFO @ Tue, 02 Aug 2022 12:58:59: 31000000 INFO @ Tue, 02 Aug 2022 12:59:05: 29000000 INFO @ Tue, 02 Aug 2022 12:59:05: 23000000 INFO @ Tue, 02 Aug 2022 12:59:05: 32000000 INFO @ Tue, 02 Aug 2022 12:59:11: 30000000 INFO @ Tue, 02 Aug 2022 12:59:11: 24000000 INFO @ Tue, 02 Aug 2022 12:59:12: 33000000 INFO @ Tue, 02 Aug 2022 12:59:18: 31000000 INFO @ Tue, 02 Aug 2022 12:59:18: 25000000 INFO @ Tue, 02 Aug 2022 12:59:19: 34000000 INFO @ Tue, 02 Aug 2022 12:59:24: 32000000 INFO @ Tue, 02 Aug 2022 12:59:25: 26000000 INFO @ Tue, 02 Aug 2022 12:59:25: 35000000 INFO @ Tue, 02 Aug 2022 12:59:30: 33000000 INFO @ Tue, 02 Aug 2022 12:59:32: 27000000 INFO @ Tue, 02 Aug 2022 12:59:32: 36000000 INFO @ Tue, 02 Aug 2022 12:59:37: 34000000 INFO @ Tue, 02 Aug 2022 12:59:38: 28000000 INFO @ Tue, 02 Aug 2022 12:59:39: 37000000 INFO @ Tue, 02 Aug 2022 12:59:43: 35000000 INFO @ Tue, 02 Aug 2022 12:59:45: 29000000 INFO @ Tue, 02 Aug 2022 12:59:46: 38000000 INFO @ Tue, 02 Aug 2022 12:59:50: 36000000 INFO @ Tue, 02 Aug 2022 12:59:52: 30000000 INFO @ Tue, 02 Aug 2022 12:59:53: 39000000 INFO @ Tue, 02 Aug 2022 12:59:56: 37000000 INFO @ Tue, 02 Aug 2022 12:59:59: 31000000 INFO @ Tue, 02 Aug 2022 12:59:59: 40000000 INFO @ Tue, 02 Aug 2022 13:00:03: 38000000 INFO @ Tue, 02 Aug 2022 13:00:05: 32000000 INFO @ Tue, 02 Aug 2022 13:00:06: 41000000 INFO @ Tue, 02 Aug 2022 13:00:09: 39000000 INFO @ Tue, 02 Aug 2022 13:00:12: 33000000 INFO @ Tue, 02 Aug 2022 13:00:13: 42000000 INFO @ Tue, 02 Aug 2022 13:00:15: 40000000 INFO @ Tue, 02 Aug 2022 13:00:19: 34000000 INFO @ Tue, 02 Aug 2022 13:00:19: 43000000 INFO @ Tue, 02 Aug 2022 13:00:22: 41000000 INFO @ Tue, 02 Aug 2022 13:00:26: 35000000 INFO @ Tue, 02 Aug 2022 13:00:26: 44000000 INFO @ Tue, 02 Aug 2022 13:00:28: 42000000 INFO @ Tue, 02 Aug 2022 13:00:32: 36000000 INFO @ Tue, 02 Aug 2022 13:00:33: 45000000 INFO @ Tue, 02 Aug 2022 13:00:35: 43000000 INFO @ Tue, 02 Aug 2022 13:00:39: 37000000 INFO @ Tue, 02 Aug 2022 13:00:40: 46000000 INFO @ Tue, 02 Aug 2022 13:00:41: 44000000 INFO @ Tue, 02 Aug 2022 13:00:46: 38000000 INFO @ Tue, 02 Aug 2022 13:00:47: 47000000 INFO @ Tue, 02 Aug 2022 13:00:48: 45000000 INFO @ Tue, 02 Aug 2022 13:00:53: 39000000 INFO @ Tue, 02 Aug 2022 13:00:53: 48000000 INFO @ Tue, 02 Aug 2022 13:00:54: 46000000 INFO @ Tue, 02 Aug 2022 13:01:00: 40000000 INFO @ Tue, 02 Aug 2022 13:01:01: 49000000 INFO @ Tue, 02 Aug 2022 13:01:01: 47000000 INFO @ Tue, 02 Aug 2022 13:01:07: 41000000 INFO @ Tue, 02 Aug 2022 13:01:08: 48000000 INFO @ Tue, 02 Aug 2022 13:01:08: 50000000 INFO @ Tue, 02 Aug 2022 13:01:14: 42000000 INFO @ Tue, 02 Aug 2022 13:01:15: 51000000 INFO @ Tue, 02 Aug 2022 13:01:17: 49000000 INFO @ Tue, 02 Aug 2022 13:01:21: 43000000 INFO @ Tue, 02 Aug 2022 13:01:22: 52000000 INFO @ Tue, 02 Aug 2022 13:01:24: 50000000 INFO @ Tue, 02 Aug 2022 13:01:27: 44000000 INFO @ Tue, 02 Aug 2022 13:01:29: 53000000 INFO @ Tue, 02 Aug 2022 13:01:30: 51000000 INFO @ Tue, 02 Aug 2022 13:01:34: 45000000 INFO @ Tue, 02 Aug 2022 13:01:36: 54000000 INFO @ Tue, 02 Aug 2022 13:01:37: 52000000 INFO @ Tue, 02 Aug 2022 13:01:41: 46000000 INFO @ Tue, 02 Aug 2022 13:01:43: 55000000 INFO @ Tue, 02 Aug 2022 13:01:43: 53000000 INFO @ Tue, 02 Aug 2022 13:01:47: 47000000 INFO @ Tue, 02 Aug 2022 13:01:50: 54000000 INFO @ Tue, 02 Aug 2022 13:01:50: 56000000 INFO @ Tue, 02 Aug 2022 13:01:54: 48000000 INFO @ Tue, 02 Aug 2022 13:01:56: 55000000 INFO @ Tue, 02 Aug 2022 13:01:57: 57000000 INFO @ Tue, 02 Aug 2022 13:02:00: 49000000 INFO @ Tue, 02 Aug 2022 13:02:03: 56000000 INFO @ Tue, 02 Aug 2022 13:02:04: 58000000 INFO @ Tue, 02 Aug 2022 13:02:07: 50000000 INFO @ Tue, 02 Aug 2022 13:02:09: 57000000 INFO @ Tue, 02 Aug 2022 13:02:12: 59000000 INFO @ Tue, 02 Aug 2022 13:02:14: 51000000 INFO @ Tue, 02 Aug 2022 13:02:16: 58000000 INFO @ Tue, 02 Aug 2022 13:02:19: 60000000 INFO @ Tue, 02 Aug 2022 13:02:20: 52000000 INFO @ Tue, 02 Aug 2022 13:02:23: 59000000 INFO @ Tue, 02 Aug 2022 13:02:26: 61000000 INFO @ Tue, 02 Aug 2022 13:02:27: 53000000 INFO @ Tue, 02 Aug 2022 13:02:29: 60000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Tue, 02 Aug 2022 13:02:33: 62000000 INFO @ Tue, 02 Aug 2022 13:02:34: 54000000 INFO @ Tue, 02 Aug 2022 13:02:36: 61000000 INFO @ Tue, 02 Aug 2022 13:02:40: 63000000 INFO @ Tue, 02 Aug 2022 13:02:40: 55000000 INFO @ Tue, 02 Aug 2022 13:02:43: 62000000 INFO @ Tue, 02 Aug 2022 13:02:47: 56000000 INFO @ Tue, 02 Aug 2022 13:02:48: 64000000 INFO @ Tue, 02 Aug 2022 13:02:49: 63000000 INFO @ Tue, 02 Aug 2022 13:02:54: 57000000 INFO @ Tue, 02 Aug 2022 13:02:55: 65000000 INFO @ Tue, 02 Aug 2022 13:02:56: 64000000 INFO @ Tue, 02 Aug 2022 13:03:00: 58000000 INFO @ Tue, 02 Aug 2022 13:03:02: 66000000 INFO @ Tue, 02 Aug 2022 13:03:03: 65000000 INFO @ Tue, 02 Aug 2022 13:03:07: 59000000 INFO @ Tue, 02 Aug 2022 13:03:09: 67000000 INFO @ Tue, 02 Aug 2022 13:03:09: 66000000 INFO @ Tue, 02 Aug 2022 13:03:14: 60000000 INFO @ Tue, 02 Aug 2022 13:03:16: 68000000 INFO @ Tue, 02 Aug 2022 13:03:16: 67000000 INFO @ Tue, 02 Aug 2022 13:03:20: 61000000 INFO @ Tue, 02 Aug 2022 13:03:23: 68000000 INFO @ Tue, 02 Aug 2022 13:03:23: 69000000 INFO @ Tue, 02 Aug 2022 13:03:27: 62000000 INFO @ Tue, 02 Aug 2022 13:03:30: 69000000 INFO @ Tue, 02 Aug 2022 13:03:31: 70000000 INFO @ Tue, 02 Aug 2022 13:03:34: 63000000 INFO @ Tue, 02 Aug 2022 13:03:37: 70000000 INFO @ Tue, 02 Aug 2022 13:03:38: 71000000 INFO @ Tue, 02 Aug 2022 13:03:41: 64000000 INFO @ Tue, 02 Aug 2022 13:03:44: 71000000 INFO @ Tue, 02 Aug 2022 13:03:46: 72000000 INFO @ Tue, 02 Aug 2022 13:03:47: 65000000 INFO @ Tue, 02 Aug 2022 13:03:51: 72000000 INFO @ Tue, 02 Aug 2022 13:03:54: 73000000 INFO @ Tue, 02 Aug 2022 13:03:54: 66000000 INFO @ Tue, 02 Aug 2022 13:03:57: 73000000 INFO @ Tue, 02 Aug 2022 13:04:01: 74000000 INFO @ Tue, 02 Aug 2022 13:04:02: 67000000 INFO @ Tue, 02 Aug 2022 13:04:04: 74000000 INFO @ Tue, 02 Aug 2022 13:04:08: 75000000 INFO @ Tue, 02 Aug 2022 13:04:09: 68000000 INFO @ Tue, 02 Aug 2022 13:04:11: 75000000 BigWig に変換しました。 INFO @ Tue, 02 Aug 2022 13:04:16: 76000000 INFO @ Tue, 02 Aug 2022 13:04:16: 69000000 INFO @ Tue, 02 Aug 2022 13:04:18: 76000000 INFO @ Tue, 02 Aug 2022 13:04:23: 70000000 INFO @ Tue, 02 Aug 2022 13:04:24: 77000000 INFO @ Tue, 02 Aug 2022 13:04:24: 77000000 INFO @ Tue, 02 Aug 2022 13:04:30: 71000000 INFO @ Tue, 02 Aug 2022 13:04:31: 78000000 INFO @ Tue, 02 Aug 2022 13:04:31: 78000000 INFO @ Tue, 02 Aug 2022 13:04:37: 72000000 INFO @ Tue, 02 Aug 2022 13:04:37: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 13:04:37: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 13:04:37: #1 total tags in treatment: 29731531 INFO @ Tue, 02 Aug 2022 13:04:37: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 13:04:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 13:04:37: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 13:04:37: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 13:04:37: #1 total tags in treatment: 29731531 INFO @ Tue, 02 Aug 2022 13:04:37: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 13:04:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 13:04:38: #1 tags after filtering in treatment: 17535016 INFO @ Tue, 02 Aug 2022 13:04:38: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 13:04:38: #1 finished! INFO @ Tue, 02 Aug 2022 13:04:38: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 13:04:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 13:04:38: #1 tags after filtering in treatment: 17535016 INFO @ Tue, 02 Aug 2022 13:04:38: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 13:04:38: #1 finished! INFO @ Tue, 02 Aug 2022 13:04:38: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 13:04:38: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 13:04:39: #2 number of paired peaks: 1231 INFO @ Tue, 02 Aug 2022 13:04:39: start model_add_line... INFO @ Tue, 02 Aug 2022 13:04:39: start X-correlation... INFO @ Tue, 02 Aug 2022 13:04:39: end of X-cor INFO @ Tue, 02 Aug 2022 13:04:39: #2 finished! INFO @ Tue, 02 Aug 2022 13:04:39: #2 predicted fragment length is 73 bps INFO @ Tue, 02 Aug 2022 13:04:39: #2 alternative fragment length(s) may be 4,73 bps INFO @ Tue, 02 Aug 2022 13:04:39: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.05_model.r WARNING @ Tue, 02 Aug 2022 13:04:39: #2 Since the d (73) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 13:04:39: #2 You may need to consider one of the other alternative d(s): 4,73 WARNING @ Tue, 02 Aug 2022 13:04:39: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 13:04:39: #3 Call peaks... INFO @ Tue, 02 Aug 2022 13:04:39: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 13:04:39: #2 number of paired peaks: 1231 INFO @ Tue, 02 Aug 2022 13:04:39: start model_add_line... INFO @ Tue, 02 Aug 2022 13:04:40: start X-correlation... INFO @ Tue, 02 Aug 2022 13:04:40: end of X-cor INFO @ Tue, 02 Aug 2022 13:04:40: #2 finished! INFO @ Tue, 02 Aug 2022 13:04:40: #2 predicted fragment length is 73 bps INFO @ Tue, 02 Aug 2022 13:04:40: #2 alternative fragment length(s) may be 4,73 bps INFO @ Tue, 02 Aug 2022 13:04:40: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.10_model.r WARNING @ Tue, 02 Aug 2022 13:04:40: #2 Since the d (73) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 13:04:40: #2 You may need to consider one of the other alternative d(s): 4,73 WARNING @ Tue, 02 Aug 2022 13:04:40: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 13:04:40: #3 Call peaks... INFO @ Tue, 02 Aug 2022 13:04:40: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 13:04:43: 73000000 INFO @ Tue, 02 Aug 2022 13:04:50: 74000000 INFO @ Tue, 02 Aug 2022 13:04:56: 75000000 INFO @ Tue, 02 Aug 2022 13:05:02: 76000000 INFO @ Tue, 02 Aug 2022 13:05:07: 77000000 INFO @ Tue, 02 Aug 2022 13:05:13: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 13:05:14: 78000000 INFO @ Tue, 02 Aug 2022 13:05:15: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 13:05:19: #1 tag size is determined as 50 bps INFO @ Tue, 02 Aug 2022 13:05:19: #1 tag size = 50 INFO @ Tue, 02 Aug 2022 13:05:19: #1 total tags in treatment: 29731531 INFO @ Tue, 02 Aug 2022 13:05:19: #1 user defined the maximum tags... INFO @ Tue, 02 Aug 2022 13:05:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Tue, 02 Aug 2022 13:05:20: #1 tags after filtering in treatment: 17535016 INFO @ Tue, 02 Aug 2022 13:05:20: #1 Redundant rate of treatment: 0.41 INFO @ Tue, 02 Aug 2022 13:05:20: #1 finished! INFO @ Tue, 02 Aug 2022 13:05:20: #2 Build Peak Model... INFO @ Tue, 02 Aug 2022 13:05:20: #2 looking for paired plus/minus strand peaks... INFO @ Tue, 02 Aug 2022 13:05:21: #2 number of paired peaks: 1231 INFO @ Tue, 02 Aug 2022 13:05:21: start model_add_line... INFO @ Tue, 02 Aug 2022 13:05:22: start X-correlation... INFO @ Tue, 02 Aug 2022 13:05:22: end of X-cor INFO @ Tue, 02 Aug 2022 13:05:22: #2 finished! INFO @ Tue, 02 Aug 2022 13:05:22: #2 predicted fragment length is 73 bps INFO @ Tue, 02 Aug 2022 13:05:22: #2 alternative fragment length(s) may be 4,73 bps INFO @ Tue, 02 Aug 2022 13:05:22: #2.2 Generate R script for model : /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.20_model.r WARNING @ Tue, 02 Aug 2022 13:05:22: #2 Since the d (73) calculated from paired-peaks are smaller than 2*tag length, it may be influenced by unknown sequencing problem! WARNING @ Tue, 02 Aug 2022 13:05:22: #2 You may need to consider one of the other alternative d(s): 4,73 WARNING @ Tue, 02 Aug 2022 13:05:22: #2 You can restart the process with --nomodel --extsize XXX with your choice or an arbitrary number. Nontheless, MACS will continute computing. INFO @ Tue, 02 Aug 2022 13:05:22: #3 Call peaks... INFO @ Tue, 02 Aug 2022 13:05:22: #3 Pre-compute pvalue-qvalue table... INFO @ Tue, 02 Aug 2022 13:05:33: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.10_peaks.xls INFO @ Tue, 02 Aug 2022 13:05:33: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.10_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 13:05:33: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.10_summits.bed INFO @ Tue, 02 Aug 2022 13:05:33: Done! pass1 - making usageList (15 chroms): 3 millis pass2 - checking and writing primary data (12670 records, 4 fields): 63 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 13:05:35: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.05_peaks.xls INFO @ Tue, 02 Aug 2022 13:05:35: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.05_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 13:05:35: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.05_summits.bed INFO @ Tue, 02 Aug 2022 13:05:35: Done! pass1 - making usageList (15 chroms): 4 millis pass2 - checking and writing primary data (21781 records, 4 fields): 39 millis CompletedMACS2peakCalling INFO @ Tue, 02 Aug 2022 13:05:54: #3 Call peaks for each chromosome... INFO @ Tue, 02 Aug 2022 13:06:12: #4 Write output xls file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.20_peaks.xls INFO @ Tue, 02 Aug 2022 13:06:12: #4 Write peak in narrowPeak format file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.20_peaks.narrowPeak INFO @ Tue, 02 Aug 2022 13:06:12: #4 Write summits bed file... /home/okishinya/chipatlas/results/dm3/SRX12178878/SRX12178878.20_summits.bed INFO @ Tue, 02 Aug 2022 13:06:12: Done! pass1 - making usageList (14 chroms): 1 millis pass2 - checking and writing primary data (3073 records, 4 fields): 59 millis CompletedMACS2peakCalling